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FreeSurfer

Neuroimaging data analysis

FreeSurfer Description
FreeSurfer is a brain imaging software package developed by the Athinoula A. Martinos Center for Biomedical Imaging at Massachusetts General Hospital for analyzing magnetic resonance imaging (MRI) scan data. It is an important tool in functional brain mapping and facilitates the visualization of the functional regions of the highly folded cerebral cortex. It contains tools to conduct both volume based and surface based analysis, which primarily use the white matter surface. FreeSurfer includes tools for the reconstruction of topologically correct and geometrically accurate models of both the gray/white and pial surfaces, for measuring cortical thickness, surface area and folding, and for computing inter-subject registration based on the pattern of cortical folds. In addition, an automated labeling of 35 non-cortical regions is included in the package.
A list below shows FreeSurfer alternatives which were either selected by us or voted for by users. You can filter this list by tags and platforms

FreeSurfer Alternatives

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    Tags: Medical Imaging, Neuroimaging, Neuroimaging Software
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    Tags: Information Technology Organisations In The United Kingdom, Medical Imaging, Neuroimaging, Neuroimaging Software, Organisations Associated With The University Of Oxford, Wellcome Trust
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    Tags: Medical Imaging, Neuroimaging, Neuroimaging Software, Image Processing Software
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    Tags: Workflow Technology, Neuroimaging, Neuroimaging Software, Science Software
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    Tags: Neuroimaging Software, University Of Texas Health Science Center At San Antonio
  • AFNI by {{dead link|date=October 2016 |bot=InternetArchiveBot |fix-attempted=yes }}

    Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying functional MRI data-a technique for mapping human brain activity. AFNI is an agglomeration of...

    Tags: Medical Imaging, Neuroimaging Software, Free Science Software
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    Latest version of InVesalius is 3.1.1 and it was released on 2017.

    Tags: Free Science Software, Medical Software, Neuroimaging Software, Free Healthcare Software, Free Bioimaging Software, Free Dicom Software
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    Tags: Computer Vision Software, Software Programmed In Java, Neuroimaging Software
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    Amira (pronounce: Ah-meer-ah) is a software platform for 3D and 4D data visualization, processing, and analysis. It is being actively developed by FEI Visualization Sciences Group, Bordeaux, France...

    Latest version of Amira is 6.1.1 and it was released on 2016-05-01.

    Tags: 3d Graphics Software, 3d Imaging, Computer Vision Software, Data Visualization Software, Graphics Software, Image Processing Software, Image Segmentation, Medical Software, Mesh Generators, Neuroimaging Software, Science Software, Software That Uses Qt, Virtual Reality
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    RapidMiner is a data science software platform developed by the company of the same name that provides an integrated environment for data preparation, machine learning, deep learning, text mining,...

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    Tags: Computer Vision Software, Data Mining And Machine Learning Software, Image Processing, Neuroscience, Neuroimaging Software, Research And Development In Germany, Software Using The Gnu Agpl License