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Neuroimaging data analysis

FreeSurfer Description
FreeSurfer is a brain imaging software package developed by the Athinoula A. Martinos Center for Biomedical Imaging at Massachusetts General Hospital for analyzing magnetic resonance imaging (MRI) scan data. It is an important tool in functional brain mapping and facilitates the visualization of the functional regions of the highly folded cerebral cortex. It contains tools to conduct both volume based and surface based analysis, which primarily use the white matter surface. FreeSurfer includes tools for the reconstruction of topologically correct and geometrically accurate models of both the gray/white and pial surfaces, for measuring cortical thickness, surface area and folding, and for computing inter-subject registration based on the pattern of cortical folds. In addition, an automated labeling of 35 non-cortical regions is included in the package.
A list below shows FreeSurfer alternatives which were either selected by us or voted for by users. You can filter this list by tags and platforms

FreeSurfer Alternatives

  • Spinal Cord Toolbox

    The Spinal Cord Toolbox (SCT) is a suite of analysis tools optimized for spinal cord images acquired with magnetic resonance imaging. Main features include segmentation, registration and calculation...

    Latest version of Spinal Cord Toolbox is 3.0.3 and it was released on 2017-04-26.

    Tags: Medical Imaging, Neuroimaging, Neuroimaging Software
  • FMRIB Software Library

    The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available...

    Latest version of FMRIB Software Library (FSL) is 5.0 and it was released on 2012-09-01.

    Tags: Information Technology Organisations In The United Kingdom, Medical Imaging, Neuroimaging, Neuroimaging Software, Organisations Associated With The University Of Oxford, Wellcome Trust
  • CONN

    CONN is a Matlab-based cross-platform imaging software for the computation, display, and analysis of functional connectivity in fMRI (functional Magnetic Resonance Imaging) in the resting state and...

    Tags: Medical Imaging, Neuroimaging, Neuroimaging Software, Image Processing Software
  • LONI Pipeline by Denis Trotckii, Samuel Hobel

    The LONI Pipeline is a free distributed system for designing, executing, monitoring and sharing scientific workflows on grid computing architectures. Pipeline allows users to connect and run any...

    Latest version of LONI Pipeline is 6.4 and it was released on 2016-11-01.

    Tags: Workflow Technology, Neuroimaging, Neuroimaging Software, Science Software
  • Mango by University of Texas Health Science Center at San Antonio,Jack L. Lancaster,Michael J. Martinez

    Mango (Multi-Image Analysis GUI) is a non-commercial software for viewing, editing and analyzing volumetric medical images. Mango is written in Java, and distributed freely in precompiled versions...

    Tags: Neuroimaging Software, University Of Texas Health Science Center At San Antonio
  • AFNI by {{dead link|date=October 2016 |bot=InternetArchiveBot |fix-attempted=yes }}

    Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying functional MRI data-a technique for mapping human brain activity. AFNI is an agglomeration of...

    Tags: Medical Imaging, Neuroimaging Software, Free Science Software
  • InVesalius

    InVesalius is a free medical software used to generate virtual reconstructions of structures in the human body. Based on two-dimensional images, acquired using computed tomography or magnetic...

    Latest version of InVesalius is 3.1.1 and it was released on 2017.

    Tags: Free Science Software, Medical Software, Neuroimaging Software, Free Healthcare Software, Free Bioimaging Software, Free Dicom Software
  • Fiji Is Just ImageJ by Johannes Schindelin, Albert Cardona, Mark Longair, Benjamin Schmid, and others

    Fiji (Fiji Is Just ImageJ) is an open source image processing package based on ImageJ. Fiji's main purpose is to provide a distribution of ImageJ with many bundled plugins. Fiji features an...

    Latest version of Fiji Is Just ImageJ is Madison and it was released on 7 March 2011 (official release, plugins continuously updated).

    Tags: Computer Vision Software, Software Programmed In Java, Neuroimaging Software
  • Amira by Zuse Institute Berlin,FEI Visualization Sciences Group

    Amira (pronounce: Ah-meer-ah) is a software platform for 3D and 4D data visualization, processing, and analysis. It is being actively developed by FEI Visualization Sciences Group, Bordeaux, France...

    Latest version of Amira is 6.1.1 and it was released on 2016-05-01.

    Tags: 3d Graphics Software, 3d Imaging, Computer Vision Software, Data Visualization Software, Graphics Software, Image Processing Software, Image Segmentation, Medical Software, Mesh Generators, Neuroimaging Software, Science Software, Software That Uses Qt, Virtual Reality
  • RapidMiner by RapidMiner

    RapidMiner is a data science software platform developed by the company of the same name that provides an integrated environment for data preparation, machine learning, deep learning, text mining,...

    Latest version of RapidMiner is 7.5 and it was released on 2017-05-03.

    Tags: Computer Vision Software, Data Mining And Machine Learning Software, Image Processing, Neuroscience, Neuroimaging Software, Research And Development In Germany, Software Using The Gnu Agpl License