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GeneNetwork

GeneNetwork Description
GeneNetwork is a combined database and open source bioinformatics data analysis software resource for systems genetics. This resource is used to study gene regulatory networks that link DNA sequence variants to corresponding differences in gene and protein expression and to differences in traits such as health and disease risk. Data sets in GeneNetwork are typically made up of large collections of genotypes (e.g., SNPs) and phenotypes that are obtained from groups of related individuals, including human families, experimental crosses of strains of mice and rats, and organisms as diverse as Drosophila melanogaster, Arabidopsis thaliana, and barley. The inclusion of genotypes for all individuals makes it practical to carry out web-based gene mapping to discover those regions of the genome that contribute to differences in gene expression, cell function, anatomy, physiology, and behavior among individuals.
A list below shows GeneNetwork alternatives which were either selected by us or voted for by users. You can filter this list by tags and platforms

Latest version of GeneNetwork is 2.0 and it was released on 2017-06-02.

GeneNetwork Alternatives

  • UCSF Chimera by Resource for Biocomputing, Visualization, and Informatics (RBVI), UCSF

    UCSF Chimera (or simply Chimera) is an extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies,...

    Latest version of UCSF Chimera is 1.11.2 and it was released on 2016-12-02.

    Tags: Bioinformatics Software, Freeware, Molecular Modelling Software, Science Software
  • TreeFinder by Gangolf Jobb

    Treefinder is a computer program for the likelihood-based reconstruction of phylogenetic trees from molecular sequences. It was written by Gangolf Jobb, a former researcher at the University of...

    Latest version of TreeFinder is march2011 and it was released on 2011-03-01.

    Tags: Computational Phylogenetics, Bioinformatics Software, Science Software, Molecular Biology, Genetics
  • TCoffee by Cédric Notredame, Centro de Regulacio Genomica (CRG) - Barcelona

    T-Coffee (Tree-based Consistency Objective Function For alignment Evaluation) is a multiple sequence alignment software using a progressive approach. It generates a library of pairwise alignments to...

    Latest version of T-Coffee is 11.00.8cbe486 and it was released on 2014-08-13.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • SPAdes by St. Petersburg State University, Russia,St. Petersburg Academic University, Russia,University of California, San Diego, USA

    SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. However, it might not be suitable for large genomes...

    Latest version of SPAdes is 3.10.1 and it was released on March 1st, 2017.

    Tags: Bioinformatics Algorithms, Bioinformatics Software, Dna Sequencing, Metagenomics Software
  • SEQUEST

    SEQUEST is a tandem mass spectrometry data analysis program used for protein identification. Sequest identifies collections of tandem mass spectra to peptide sequences that have been generated from...

    Tags: Proteomics, Bioinformatics Software, Mass Spectrometry Software
  • by Bennett N.F., Ganesan N Georgetown University

    Sequerome is a web-based Sequence profiling tool for integrating the results of a BLAST sequence-alignment report with external research tools and servers that perform advanced sequence...

    Tags: Bioinformatics Software, Freeware
  • RasMol by Herbert J. Bernstein

    RasMol is a computer program written for molecular graphics visualization intended and used mainly to depict and explore biological macromolecule structures, such as those found in the Protein Data...

    Latest version of RasMol is 2.7.5.1 and it was released on 2009-07-17.

    Tags: Bioinformatics Software, Molecular Modelling Software, Free Science Software, Free Software Programmed In C, Free Educational Software
  • PICRUSt by Morgan Langille,Jesse Zaneveld,Daniel McDonald,Greg Caporaso,Gavin Douglas

    PICRUSt is a bioinformatics software package. The name is an abbreviation for Phylogenetic Investigation of Communities by Reconstruction of Unobserved States. The tool serves in the field of...

    Tags: Metagenomics, Bioinformatics Software, Environmental Microbiology
  • Phyre2 by {{Plainlist| * Lawrence Kelley * Bob Maccallum * Benjamin Jefferys * Alex Herbert * Riccardo Bennett-Lovsey *Michael Sternberg}}

    Phyre and Phyre2 (Protein Homology/AnalogY Recognition Engine; pronounced as 'fire') are web-based services for protein structure prediction that are free for non-commercial use. Phyre is among the...

    Latest version of Phyre2 is 2.0 and it was released on 2011-02-23.

    Tags: Bioinformatics Software, Computational Science
  • PHYLogeny Inference Package by University of Washington

    PHYLogeny Inference Package (PHYLIP) is a free computational phylogenetics package of programs for inferring evolutionary trees (phylogenies). It consists of 35 portable programs, i.e., the source...

    Latest version of PHYLogeny Inference Package is 3.696 and it was released on 2014-11-02.

    Tags: Computational Phylogenetics, Bioinformatics Software
  • OpenChrom by Philip Wenig, Alexander Kerner, Lorenz Gerber, Matthias Mailänder, ...

    OpenChrom is an open source software for the analysis and visualization of mass spectrometric and chromatographic data. Its focus is to handle native data files from several mass spectrometry...

    Latest version of OpenChrom is 1.2.0 and it was released on 2017-08-25.

    Tags: Bioinformatics Software, Mass Spectrometry Software, Chemistry Software For Linux, Science Software For Macos, Science Software For Windows, Chromatography Software, Eclipse Software
  • OLIGO Primer Analysis Software by Molecular Biology Insights, Inc.

    OLIGO Primer Analysis Software was the first publicly available software for DNA primer design. The first papers describing this software were published in 1989 and 1990, and consecutive upgrades in...

    Latest version of OLIGO Primer Analysis Software is 7.54 and it was released on March 23, 2011.

    Tags: Bioinformatics Software
  • MUltiple Sequence Comparison by LogExpectation by drive5

    MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is computer software for multiple sequence alignment of protein and nucleotide sequences. It is licensed as public domain. The method was...

    Latest version of MUltiple Sequence Comparison by Log-Expectation is 3.8.31 and it was released on 2016-08-18.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Modeller by University of California, San Francisco,Accelrys

    Modeller, often stylized as MODELLER, is a computer program used for homology modeling to produce models of protein tertiary structures and quaternary structures (rarer). It implements a method...

    Latest version of Modeller is 9.19 and it was released on 2017-07-25.

    Tags: Molecular Modelling Software, Bioinformatics Software, Computational Biology
  • MEGAN by Daniel Huson et al.

    MEGAN ("MEtaGenome ANalyzer") is a computer program that allows optimized analysis of large metagenomic datasets. Metagenomics is the analysis of the genomic sequences from a usually uncultured...

    Latest version of MEGAN is 6.4 and it was released on 2016.

    Tags: Metagenomics Software, Bioinformatics Software, Computational Phylogenetics, Genetics, Molecular Biology
  • Molecular Evolutionary Genetics Analysis by Pennsylvania State University

    Molecular Evolutionary Genetics Analysis (MEGA) is computer software for conducting statistical analysis of molecular evolution and for constructing phylogenetic trees. It includes many...

    Latest version of Molecular Evolutionary Genetics Analysis is 7.0.26 and it was released on {{Start date and age|2017|05}}.

    Tags: Data Visualization Software, Bioinformatics Software
  • Mascot

    Mascot is a software search engine that uses mass spectrometry data to identify proteins from peptide sequence databases. Mascot is widely used by research facilities around the world. Mascot uses a...

    Latest version of Mascot is 2.6.00 and it was released on {{Start date and age|2016|12|df=yes}}.

    Tags: Proteomics, Bioinformatics Software, Mass Spectrometry Software
  • Jmol by Jmol development team

    Jmol is computer software for molecular modelling chemical structures in 3-dimensions. Jmol returns a 3D representation of a molecule that may be used as a teaching tool, or for research e.g., in...

    Tags: Bioinformatics Software, Chemistry Software For Linux, Free Chemistry Software, Free Software Programmed In Java, Molecular Modelling Software
  • MacVector by MacVector, Inc.

    MacVector is a commercial sequence analysis application for Apple Macintosh computers running Mac OS X. It is intended to be used by molecular biologists to help analyze, design, research and...

    Latest version of MacVector is 15.5.3 and it was released on [wiki=ecb0313c48409e389f36a444b070e0da]10 July 2016[/wiki].

    Tags: Bioinformatics Software, Computational Science
  • Kepler Scientific Workflow System

    Kepler is a free software system for designing, executing, reusing, evolving, archiving, and sharing scientific workflows. Kepler's facilities provide process and data monitoring, provenance...

    Latest version of Kepler Scientific Workflow System is 2.5 and it was released on 2015-10-28.

    Tags: Workflow Technology, Bioinformatics Software
  • ITASSER by Yang Zhang Lab

    I-TASSER (Iterative Threading ASSEmbly Refinement) is a bioinformatics method for predicting three-dimensional structure model of protein molecules from amino acid sequences. It detects structure...

    Tags: Bioinformatics, Bioinformatics Software
  • HHsearch by Johannes Söding

    HHsearch is an open-source software program for protein sequence searching that is part of the free HH-suite software package. HHpred is a free protein function and protein structure prediction...

    Latest version of HHsearch is 2.0.16 and it was released on 2013-02-18.

    Tags: Bioinformatics Software, Computational Science
  • HHsuite by Johannes Söding, Michael Remmert, Andreas Biegert, Andreas Hauser, Markus Meier, Martin Steinegger

    The HH-suite is an open-source software package for sensitive protein sequence searching. It contains programs that can search for similar protein sequences in protein sequence databases. These...

    Latest version of HH-suite is 2.0.16 and it was released on 2013-02-18.

    Tags: Bioinformatics Software, Computational Science
  • geWorkbench by Columbia University,,First Genetic Trust,National Cancer Institute

    geWorkbench (genomics Workbench) is an open-source software platform for integrated genomic data analysis. It is a desktop application written in the programming language Java. geWorkbench uses a...

    Latest version of geWorkbench is 2.6.0.3 and it was released on 2016-12-21.

    Tags: Bioinformatics Software, Free Software, Cluster Analysis, Systems Biology, Protein Structure, Gene Expression
  • GenMAPP by Alexander Pico, Kristina Hanspers, Nathan Salomonis, Kam Dahlquist, Scott Doniger, Jeff Lawlor, Alex Zambon, Lynn Ferrante, Karen Vranizan, Steven C. Lawlor, Bruce Conklin

    GenMAPP (Gene Map Annotator and Pathway Profiler) is a free, open-source bioinformatics software tool designed to visualize and analyze genomic data in the context of pathways (metabolic,...

    Tags: Bioinformatics Software, Free Science Software, Systems Biology, Windowsonly Free Software
  • GENESIS

    GENESIS (The GEneral NEural SImulation System) is a simulation environment for constructing realistic models of neurobiological systems at many levels of scale including: sub-cellular processes,...

    Latest version of GENESIS is 2.4 and it was released on {{Start date and age|2014|11}}.

    Tags: 1988 Software, Bioinformatics Software, Artificial Intelligence, Software Using The Gpl License
  • GeneMark by Georgia Institute of Technology

    GeneMark is a generic name for a family of ab initio gene prediction programs developed at the Georgia Institute of Technology in Atlanta. Developed in 1993, original GeneMark was used in 1995 as a...

    Tags: Metagenomics Software, Mathematical And Theoretical Biology, Genomics, Bioinformatics Software
  • Galaxy

    Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not...

    Latest version of Galaxy is 17.01 and it was released on 2017-02-23.

    Tags: Bioinformatics Software, Free Software Projects, Workflow Software
  • FastPCR

    FastPCR is an integrated tool for PCR primers or probes design, in silico PCR, oligonucleotide assembly and analyses, alignment and repeat...

    Tags: Bioinformatics, Bioinformatics Software, Polymerase Chain Reaction
  • DAVID Bioinformatics Resources by Laboratory of Immunopathogenesis and Bioinformatics

    DAVID (the Database for Annotation, Visualization and Integrated Discovery) is a free online url=://david.abcc.ncifcrf.gov The DAVID Bioinformatics Resources consists of the DAVID Knowledgebase and...

    Latest version of DAVID Bioinformatics Resources is 6.7 and it was released on 2010-01-27.

    Tags: Biological Databases, Bioinformatics Software, Laboratory Software, Systems Biology
  • CSBLAST by Angermueller C, Biegert A, and Soeding J

    CS-BLAST (Context-Specific BLAST) is a tool that searches a protein sequence that extends BLAST (Basic Local Alignment Search Tool), (Basic Local Alignment Search Tool) using context-specific...

    Latest version of CS-BLAST is 2.2.3 and it was released on 2013-12-07.

    Tags: Bioinformatics Software, Computational Science
  • cTAKES by Apache Software Foundation

    Apache cTAKES: clinical Text Analysis and Knowledge Extraction System is an open-source natural language processing system for information extraction from electronic health record clinical...

    Tags: Apache Software Foundation Projects, Electronic Health Record Software, Natural Language Processing Software, Free Healthcare Software, Bioinformatics Software
  • Coot by Paul Emsley,Kevin D. Cowtan

    The program Coot (Crystallographic Object-Oriented Toolkit) is used to display and manipulate atomic models of macromolecules, typically of proteins or nucleic acids, using 3D computer graphics. It...

    Latest version of Coot is 0.8.7 and it was released on 2016-11-08.

    Tags: Crystallography Software, Molecular Modelling Software, Bioinformatics Software, Free Science Software, Free Chemistry Software, Science Software That Uses Gtk, Science Software For Linux
  • Chemistry Development Kit by The CDK Project

    The Chemistry Development Kit (CDK) is computer software, a library in the programming language Java, for chemoinformatics and bioinformatics. It is available for Windows, Linux, Unix, and macOS. It...

    Tags: Bioinformatics Software, Chemistry Software For Linux, Computational Chemistry Software, Free Chemistry Software, Free Software Programmed In Java
  • Biopython

    The Biopython Project is an open-source collection of non-commercial Python tools for computational biology and bioinformatics, created by an international association of developers. It contains...

    Latest version of Biopython is 1.70 and it was released on 2017-07-11.

    Tags: Articles With Example Python Code, Bioinformatics Software, Computational Science, Python Scientific Libraries
  • BioPerl

    BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral role in the Human Genome...

    Latest version of BioPerl is 1.6.924 and it was released on 2014-07-10.

    Tags: Bioinformatics Software, Perl Software, Free Bioinformatics Software
  • BioJava

    BioJava is an open-source software project dedicated to provide Java tools to process biological data. BioJava is a set of library functions written in the programming language Java for manipulating...

    Latest version of BioJava is 4.2.1 and it was released on 2016-01-15.

    Tags: Bioinformatics Software, Java Platform Software
  • Bioconductor

    Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. Bioconductor is...

    Latest version of Bioconductor is 3.5 and it was released on 2017-04-25.

    Tags: Bioinformatics Software, Free Bioinformatics Software, Free Science Software, Free R Software, Science Software For Macos, Science Software For Windows, Science Software For Linux
  • Bioclipse by The Bioclipse Project

    The Bioclipse project is a Java-based, open source, visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). It gained scripting functionality in 2009. Like...

    Tags: Bioinformatics Software, Cheminformatics, Java Platform Software, Free Chemistry Software
  • BioBIKE

    BioBike(nee. BioLingua ) is a cloud-based, through-the-web programmable (Paas) symbolic biocomputing and bioinformatics platform that aims to make computational biology, and especially intelligent...

    Tags: Bioinformatics Software, Free Software Projects, Cloud Computing, Cloud Platforms
  • BioloMICS by BioAware SA NV

    BioloMICS is a bioinformatics software application developed by the company BioAware SA NV. It is tool allowing specialized and scientific biological databases to be created to fit the specific...

    Tags: Bioinformatics Software, Biological Databases
  • BALL project by BALL project team

    BALL (pronounced "ball") is computer software consisting of the versatile C++ class framework Biochemical Algorithms Library (BALL), a set of algorithms and data structures for molecular modelling...

    Latest version of BALL project is 1.4.2 and it was released on 2013-01-28.

    Tags: C Libraries, Computational Chemistry Software, Molecular Modelling Software, Bioinformatics Software, Free Bioinformatics Software, Chemistry Software For Linux, Science Software That Uses Qt, Articles With Example C Code
  • ArrayTrack by U.S. Food and Drug Administration

    ArrayTrack is a multi-purpose bioinformatics tool primarily used for microarray data management, analysis, and interpretation. ArrayTrack was developed to support in-house filter array research for...

    Latest version of ArrayTrack is 3.5.0 and it was released on 2010-03-03.

    Tags: Bioinformatics Software, Microarrays
  • BAliPhy by Benjamin Redelings

    BAli-Phy is a free software program for simultaneously estimating a multiple sequence alignment and its phylogenetic tree. BAli-Phy achieves high accuracy in alignment estimation by using...

    Latest version of BAli-Phy is 2.3.8 and it was released on {{release date and age|16|1|30|df=yes}}.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Anduril by University of Helsinki

    Anduril is an open source component-based workflow framework for scientific data analysis developed at the Systems Biology Laboratory, University of Helsinki. Anduril is designed to enable...

    Latest version of Anduril is 1.2.23 and it was released on 2014-06-24.

    Tags: Workflow Technology, Bioinformatics Software
  • Pipeline Pilot by Accelrys

    Pipeline Pilot is the authoring tool for the Accelrys Enterprise Platform. It is a scientific visual and dataflow programming language, used in various scientific domains, such as cheminformatics...

    Latest version of Pipeline Pilot is 8.5 CU3 and it was released on {{Start date|2012|05||df=yes/no}}.

    Tags: Science Software, Enterprise Application Integration, Extract Transform Load Tools, Bioinformatics Software, Computational Chemistry Software, Computer Vision Software, Data Analysis Software, Data Mining And Machine Learning Software, Data Visualization Software, Laboratory Software, Mass Spectrometry Software, Natural Language Processing Software, Numerical Software, Plotting Software, Proprietary Software, Visual Programming Languages, Articles Created Via The Article Wizard
  • XRATE by Ian Holmes (UC Berkeley)

    XRATE is a program for prototyping phylogenetic hidden Markov models and stochastic context-free grammars. It is used to discover patterns of evolutionary conservation in sequence alignments. The...

    Tags: Bioinformatics Software
  • WHAT IF by University of Groningen;,EMBL,Heidelberg;,CMBI,Radboud University Nijmegen;,Radboud University Nijmegen Medical Centre (Radboudumc),WHAT IF Foundation

    WHAT IF is a computer program used in a wide variety of computational (in silico) macromolecular structure research fields. The software provides a flexible environment to display, manipulate, and...

    Latest version of WHAT IF is 6.0 and it was released on {{Start date and age|2016|df=yes}}.

    Tags: Molecular Modelling Software, Bioinformatics Software, Protein Structure
  • ViennaRNA Package by Institut für theoretische Chemie, Währingerstr

    The ViennaRNA Package is a set of standalone programs and libraries used for prediction and analysis of RNA secondary structures. The source code for the package is distributed freely and compiled...

    Latest version of ViennaRNA Package is v2.3.3 and it was released on 2017-01-24.

    Tags: Bioinformatics Software, Bioinformatics Algorithms, Computational Biology
  • Vector NTI by Life Technologies

    Vector NTI is a commercial bioinformatics software package used by many life scientists to work, among other things, with nucleic acids and proteins in silico .]It]allows researchers to, for...

    Latest version of Vector NTI is Vector NTI Express v1.1.1 (Mac & Windows); Vector NTI Advance v11.5.2 (Windows & Mac w/PC Emulation) and it was released on 2012-09-20.

    Tags: Bioinformatics Software
  • TPP by Institute for Systems Biology

    The Trans-Proteomic Pipeline (TPP) is an open-source data analysis software for proteomics developed at the Institute for Systems Biology (ISB) by the Ruedi Aebersold group under the Seattle...

    Latest version of TPP is 5.0.0 and it was released on 2016-10-11.

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Health Sciences
  • taveRNA by Simon Fraser University

    taveRNA is a software suite for RNA/DNA secondary structure. It is developed in the laboratories for computational biology of the School of Computing Science at the Simon Fraser University. The...

    Tags: Bioinformatics Software, Simon Fraser University
  • TimeTree

    TimeTree is a free public database developed by S. Blair Hedges and Sudhir Kumar, now at Temple University, for presenting times of divergence in the tree of life. The basic concept has been to...

    Tags: Bioinformatics Software
  • Staden Package by James Bonfield, et al.

    The Staden Package is computer software, a set of tools for DNA sequence assembly, editing, and sequence analysis. It is open-source software, released under a BSD 3-clause...

    Latest version of Staden Package is 2.0.0b9 and it was released on 2012-01-24.

    Tags: Bioinformatics Software, Computational Science
  • Sirius by San Diego Supercomputer Center

    Sirius is a molecular modelling and analysis system developed at San Diego Supercomputer Center. Sirius is designed to support advanced user requirements that go beyond simple display of small...

    Latest version of Sirius is 1.2 and it was released on 2008-11-18.

    Tags: Molecular Modelling Software, Bioinformatics Software
  • ShelXle by Christian B. Hübschle

    The program ShelXle is a graphical user interface for the structure refinement program SHELXL. ShelXle combines an editor with syntax highlighting for the SHELXL-associated .ins (input) and .res...

    Latest version of ShelXle is 1.0.825 and it was released on 2017-01-28.

    Tags: Crystallography Software, Molecular Modelling Software, Bioinformatics Software, Free Science Software
  • SeqCorator by NoeGen Inc.

    SeqCorator is a bioinformatics software which can run in multiple operating systems (Windows, Mac OS, Unix/Linux) with the same...

    Latest version of SeqCorator is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • Scigress by Fujitsu Limited

    Scigress, stylized SCiGRESS, is a software suite for molecular modelling, computational chemistry, drug design, and materials science, a successor to Computer Aided Chemistry (CAChe)...

    Latest version of Scigress is 2.7(3.2) and it was released on {{Start date and age|2016|05}}.

    Tags: Molecular Modelling Software, Computational Chemistry, Molecular Modelling, Bioinformatics Software, Physics Software, Computational Chemistry Software
  • QuteMol by ISTI,CNR

    QuteMol is an open source, interactive, molecular visualization system. QuteMol utilizes the current capabilities of modern GPUs through OpenGL shaders to offer an array of innovative visual...

    Latest version of QuteMol is 0.4.1 and it was released on 2007-06-06.

    Tags: Molecular Modelling Software, Free Science Software, Chemistry Software For Linux, Free 3d Graphics Software, Free Software Programmed In C, Bioinformatics Software, Software That Uses Wxwidgets
  • ProteoWizard

    ProteoWizard is a set of open-source, cross-platform tools and libraries for proteomics data analyses. It provides a framework for unified mass spectrometry data file access and performs standard...

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Software Using The Apache License
  • PrimerPlex by PREMIER Biosoft

    PrimerPlex designs oligos for standard multiplex PCR assays and for bead-based suspension array systems such as BioPlex-200 and Luminex 100/200 based on xMAP technology. The assays are used for...

    Tags: Bioinformatics Software
  • Primer Premier by Premier Biosoft

    Primer Premier software combines design of primers for various PCR applications under one common platform. The software supports design of degenerate primers on alignments for amplifying related set...

    Tags: Bioinformatics Software
  • Phyloscan by Wadsworth Center, New York State Department of Health

    Phyloscan is a web service for DNA sequence analysis that is free and open to all users (without login requirement). For locating matches to a user-specified sequence motif for a regulatory binding...

    Latest version of Phyloscan is 2.2 and it was released on 2010-01-28.

    Tags: Bioinformatics, Bioinformatics Software, Computational Science
  • Phylogenetic Analysis Using Parsimony and other methods

    PAUP* (Phylogenetic Analysis Using Parsimony *and other methods) is a computational phylogenetics program for inferring evolutionary trees (phylogenies), written by David L. Swofford. Originally, as...

    Tags: Computational Phylogenetics, Bioinformatics Software
  • NoePrimer by NoeGen Inc.

    NoePrimer is a bioinformatics software which can run in multiple operating systems (windows, Mac OS, Unix/Linux) with the same...

    Latest version of NoePrimer is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • Newbler by 454 Life Sciences

    Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life...

    Latest version of Newbler is v2.7 and it was released on 2012-02-28.

    Tags: Bioinformatics Software, Computational Science
  • Metascape Bioinformatics Resources by Sanford Burnham, UCSD, GNF

    Metascape is a free gene annotation and analysis resource that helps biologists make sense of one or multiple gene lists. Metascape provides automated meta-analysis tools to understand either common...

    Latest version of Metascape Bioinformatics Resources is 3.0 and it was released on 2016-11-02.

    Tags: Biological Databases, Bioinformatics Software, Laboratory Software, Systems Biology
  • Mesquite A modular system for evolutionary analysis

    Mesquite is a software package primarily designed for phylogenetic analyses. It was developed as a successor to MacClade, when the authors recognized that implementing a modular architecture in...

    Latest version of Mesquite: A modular system for evolutionary analysis is 3.2 and it was released on 2017-01-01.

    Tags: Computational Phylogenetics, Bioinformatics Software, Phylogenetics
  • Mega2 by Daniel E. Weeks, Robert V. Baron, Justin R. Stickel.

    Mega2 (short for manipulation environment for genetic analysis) allows the applied statistical geneticist to convert one's data from several input formats to a large number output formats suitable...

    Latest version of Mega2 is 4.9.2 and it was released on 2017-06-13.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • MAVID by Nicolas Bray (UC Berkeley), Lior Pachter (UC Berkeley)

    MAVID is a multiple sequence alignment program suitable for the alignment of large numbers of DNA sequences. The sequences can be small mitochondrial genomes or large genomic regions up to megabases...

    Tags: Bioinformatics Software, Computational Phylogenetics
  • LabKey Server by LabKey

    LabKey Server is free, open source software available for scientists to integrate, analyze, and share biomedical research data. The platform provides a secure data repository that allows web-based...

    Latest version of LabKey Server is 17.2 and it was released on 2017-07-14.

    Tags: Bioinformatics Software, Free Bioinformatics Software, Free Science Software, Mass Spectrometry Software, Proteomics, Science Software For Windows, Science Software For Linux, Science Software For Macos
  • Jalview by Andrew Waterhouse, James Procter, David Martin and Geoffrey Barton at the University of Dundee.,Original version by Michele Clamp, James Cuff, Stephen Searle, Geoffrey Barton.

    Jalview is a piece of bioinformatics software that is used to look at and edit multiple sequence alignments. It is written in the Java programming language. The programme was originally written by...

    Latest version of Jalview is 2.10.1 and it was released on 2016-11-29.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Integrated Genome Browser

    Integrated Genome Browser (IGB) (pronounced Ig-Bee) is an open source genome browser, a visualization tool used to observe biologically-interesting patterns in genomic data sets, including sequence...

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • IMOD by David Mastronarde et al. at the Boulder Laboratory for 3-D Electron Microscopy of Cells

    IMOD is an open-source, cross-platform suite of modeling, display and image processing programs used for 3D reconstruction and modeling of microscopy images with a special emphasis on electron...

    Latest version of IMOD is 4.3.7 and it was released on February 23, 2012.

    Tags: Bioinformatics Software, Science Software, Freeware
  • HyPhy by Sergei L Kosakovsky Pond, Art FY Poon, Steven Weaver, N. Lance Hepler, Martin Smith.

    HYPHY is a free multiplatform (Mac, Windows and UNIX) Computational phylogenetics software package intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to...

    Latest version of HyPhy is June, 2012 and it was released on 2012-06-21.

    Tags: Computational Phylogenetics, Bioinformatics Software
  • GESS by NCSS, LLC

    GESS is a computer program for analyzing gene expression data obtained from microarrays. NCSS LLC is the name of the company that produces GESS. NCSS LLC also produces PASS (Power Analysis and...

    Latest version of GESS is GESS 2006 and it was released on May, 2006.

    Tags: Bioinformatics Software, Microarrays
  • GENtle by Magnus Manske

    GENtle is a free software under GPL...

    Latest version of GENtle is 1.9.0 and it was released on 2006-04-07.

    Tags: Bioinformatics Software, Free Science Software, Science Software For Linux, Software That Uses Wxwidgets
  • GenomeSpace by Broad Institute

    GenomeSpace is an environment for genomics software tools and applications. It helps users manage their analysis workflows involving multiple diverse tools, including web applications and desktop...

    Latest version of GenomeSpace is beta 5.0 and it was released on {{Start date and age|2012|04}}.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • GenGIS by Donovan Parks, Mike Porter, Timothy Mankowski, Suwen Wang, Sylvia Churcher, Alex Keddy, Christian Blouin, Jacqueline Whalley, Stephen Brooks, Rob Beiko

    GenGIS merges geographic, ecological and phylogenetic biodiversity data in a single interactive visualization and analysis environment. A key feature of GenGIS is the testing of geographic axes that...

    Latest version of GenGIS is 2.4.1 and it was released on 2015.

    Tags: Bioinformatics Software, Biogeography, Genetics, Molecular Biology
  • GenePattern by Broad Institute

    GenePattern is a freely available computational biology open-source software package developed at the Broad Institute of MIT and Harvard for the analysis of genomic data. Designed to enable...

    Latest version of GenePattern is 3.9.8 and it was released on June 2016.

    Tags: Bioinformatics Software, Dna Sequencing, Gene Expression
  • Gene Designer by DNA2.0

    Gene Designer is a computer software package for bioinformatics. It is used by molecular biologists from academia, government, and the pharmaceutical, chemical, agricultural, and biotechnology...

    Latest version of Gene Designer is 2.01.191 and it was released on 2015-10-09.

    Tags: Bioinformatics, Bioinformatics Software
  • Foldit by University of Washington, Center for Game Science, Department of Biochemistry

    Foldit is an online puzzle video game about protein folding. It is part of an experimental research project developed by the University of Washington, Center for Game Science, in collaboration with...

    Tags: 2008 Video Games, Linux Games, Macos Games, Windows Games, Puzzle Video Games, Humanbased Computation Games, Luascripted Video Games, Bioinformatics Software, Computational Biology, Molecular Biology, Protein Folding, Protein Structure, Gamification
  • FlyExpress

    FlyExpress is a free database that collects the expression patterns of Drosophila melanogaster in embryogenesis via a series of images submitted from BDGP, Fly-FISH and publications from other...

    Tags: Insect Developmental Biology, Model Organism Databases, Bioinformatics Software
  • FASTA by Pearson W.R.

    FASTA is a DNA and protein sequence alignment software package first described (as FASTP) by David J. Lipman and William R. Pearson in 1985. Its legacy is the FASTA format which is now ubiquitous in...

    Tags: Computational Phylogenetics, Bioinformatics Software
  • esyN

    esyN (Easy Networks) is an open source bioinformatics web-tool for visualizing, building and analysing molecular interaction networks. esyN is based on cytoscape.js and its aim is to make it easy...

    Latest version of esyN (Easy Networks) is 2.1 and it was released on 2016-01-17.

    Tags: Bioinformatics Software, Proteomics, Metabolomic Databases, Free Software
  • eMovie by Israel Structural Proteomics Center

    eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of...

    Tags: Molecular Modelling Software, Data Visualization Software, Bioinformatics Software
  • DNADynamo by BlueTractorSoftware Ltd

    DNADynamo is a commercial DNA sequence analysis software package produced by Blue Tractor Software Ltd that runs on Microsoft Windows, Mac OS X and Linux It is used by molecular biologists to...

    Tags: Bioinformatics Software, Computational Science
  • DECIPHER by Erik Wright

    Decipher, stylized as DECIPHER, is a software toolset that can be used to decipher and manage biological sequences efficiently using the programming language R. Some functions of the program are...

    Latest version of DECIPHER is 2.2.0 and it was released on {{Start date and age|2016}}.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Cytoscape

    Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression profiles and other state data. Additional features...

    Latest version of Cytoscape is 3.5.1 and it was released on 2017-04-26.

    Tags: Bioinformatics Software, Systems Biology, Mathematical And Theoretical Biology, Graph Drawing Software, Crossplatform Software, Java Platform Software
  • CLUSTAL by {{Plainlist| * Des Higgins * Fabian Sievers * David Dineen * Andreas Wilm (all at the Conway Institute, UCD)}}

    Clustal is a series of widely used computer programs used in Bioinformatics for multiple sequence...

    Latest version of CLUSTAL is 1.2.2 and it was released on 2016-07-01.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • CheShift2

    CheShift-2 (pronounced /tʃeʃɪft/) is an application created to compute 13Cα and 13Cβ protein chemical shifts and to validate protein structures. It is based on quantum mechanics computations of 13Cα...

    Latest version of CheShift-2 is 3.0 and it was released on 2013-09-01.

    Tags: Bioinformatics Software
  • Budapest Reference Connectome by Balázs Szalkai, Csaba Kerepesi, Bálint Varga, Vince Grolmusz

    The Budapest Reference Connectome server computes the frequently appearing anatomical brain connections of 418 healthy subjects. It has been prepared from diffusion MRI datasets of the Human...

    Tags: Computational Neuroscience, Neuroscience, Neuroinformatics, Bioinformatics, Bioinformatics Software, Free Bioinformatics Software
  • BLAT by Jim Kent,UCSC

    BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the...

    Tags: Bioinformatics Software, Laboratory Software
  • Biskit by Raik Grünberg, Johan Leckner, and others

    Biskit is an open source software package written in Python. The package facilitates research in Structural bioinformatics and molecular modelling. Biskit falls into two parts: * an Object-oriented...

    Tags: Bioinformatics Software, Molecular Modelling, Physics Software, Computational Chemistry Software, Free Science Software, Free Software Programmed In Python, Molecular Dynamics
  • BioPHP

    BioPHP is a collection of open source PHP code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other bioinformatics tools. BioRuby is released under the GNU GPL...

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • BioRuby

    BioRuby is a collection of Open Source Ruby code, comprising classes for computation molecular biology and bioinformatics. It contains classes for DNA and protein sequence analysis, sequence...

    Latest version of BioRuby is 1.5.0 and it was released on 2015-07-01.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • BioMart

    BioMart is a community-driven project to provide a single point of access to distributed research data. The BioMart project contributes open source software and data services to the international...

    Tags: Bioinformatics Software, Free Software Projects, Biological Databases, Data Warehousing Products
  • BioNumerics by Applied Maths N.V.

    BioNumerics is a suite of bioinformatics software applications developed by the company Applied Maths...

    Tags: Bioinformatics Software
  • Bioinformatic Harvester by Urban Liebel, Björn Kindler

    The Bioinformatic Harvester was a bioinformatic meta search engine created by the European Molecular Biology Laboratory and subsequently hosted and further developed by KIT Karlsruhe Institute of...

    Latest version of Bioinformatic Harvester is 4 and it was released on 2011-05-24.

    Tags: Bioinformatics Software, Biological Databases, Internet Search Engines, Biology Websites
  • Beacon Designer by Premier Biosoft

    Beacon Designer designs highly specific and efficient primers and probes for real time PCR (polymerase chain reaction) assays. It is compatible to work on Windows as well as on Mac. The software...

    Latest version of Beacon Designer is 7.9 and it was released on [wiki=58c032d8e88b253d5577448141ed2384]17 June 2010[/wiki].

    Tags: Bioinformatics Software
  • Archaeopteryx by Christian M. Zmasek

    Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees. This type of program can be used for a variety of analyses of...

    Latest version of Archaeopteryx is 0.972+ beta 9M and it was released on 2012.08.08.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • AMPHORA by Martin Wu, Jonathan Eisen et al.

    AMPHORA ("AutoMated Phylogenomic infeRence Application") is an open-source bioinformatics workflow. AMPHORA2 uses 31 bacterial and 104 archaeal phylogenetic marker genes for inferring phylogenetic...

    Latest version of AMPHORA is 2.0 and it was released on 2013.

    Tags: Metagenomics Software, Bioinformatics Software, Free Bioinformatics Software, Computational Phylogenetics, Free Science Software
  • Abalone by Agile Molecule

    Abalone is a general purpose molecular dynamics and molecular graphics program for simulations of bio-molecules in a periodic boundary conditions in explicit (flexible SPC water model) or in...

    Latest version of Abalone is 1.9.0 and it was released on 2016-05-17.

    Tags: Science Software, Molecular Modelling Software, Molecular Dynamics Software, Monte Carlo Software, Bioinformatics Software, Computational Chemistry Software
  • AMAP by Ariel Schwartz (UC Berkeley), Lior Pachter (UC Berkeley)

    AMAP is a multiple sequence alignment program based on a new approach to multiple alignment called sequence annealing. This approach consists of building up the multiple alignment one match at a...

    Tags: Bioinformatics Software
  • AlleleID by PREMIER Biosoft

    AlleleID designs oligos for strain differentiation and taxa specific assays. This aids in bacterial identification, pathogen detection and species identification. The software is designed to run on...

    Latest version of AlleleID is 7.80 and it was released on 29 June 2013.

    Tags: Bioinformatics Software
  • Stemloc by Ian Holmes (UC Berkeley)

    Stemloc is a program for pairwise RNA structural alignment based on probabilistic models of RNA structure known as Pair stochastic context-free grammars. Stemloc implements constrained versions of...

    Tags: Bioinformatics Software
  • SplitsTree by Daniel Huson and David Bryant

    SplitsTree is a popular program for inferring phylogenetic trees or, more generally, phylogenetic networks from various types of data such as a sequence alignment, a distance matrix or a set of...

    Latest version of SplitsTree is 4.14.4 and it was released on 2008.

    Tags: Bioinformatics Software, Computational Phylogenetics, Genetics, Molecular Biology
  • RAPTOR by Bioinformatics Solutions Inc.

    RAPTOR is protein threading software used for protein structure prediction. It has been replaced by RaptorX, which is much more accurate than...

    Latest version of RAPTOR is 4.2 and it was released on {{Start date and age|2008|11}}.

    Tags: Bioinformatics Software, Molecular Modelling Software
  • NoeClone by NoeGen Inc.

    NoeClone is a bioinformatics software which can run in multiple operating systems (Windows, Mac OS, Unix/Linux) with the same...

    Latest version of NoeClone is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • MAFFT by Kazutaka Katoh

    In bioinformatics, MAFFT is a multiple sequence alignment program for amino acid or nucleotide sequences. The software is named after the acronym Multiple Alignment using Fast Fourier Transform...

    Latest version of MAFFT is 7.299 and it was released on 2016-06-28.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Handel by Ian Holmes (UC Berkeley)

    Handel is a suite of programs for multiple sequence alignment. Since it is based on a model of DNA sequence evolution that explicitly incorporates insertion and deletion events, it effectively...

    Tags: Bioinformatics Software
  • Giant Virus Finder by Csaba Kerepesi

    The Giant Virus Finder is a free bioinformatics software for finding giant viruses in...

    Tags: Metagenomics Software, Bioinformatics Software, Free Bioinformatics Software, Free Science Software
  • GENSCAN by Christopher Burge

    In bioinformatics GENSCAN is a program to identify complete gene structures in genomic DNA. It is a GHMM-based program that can be used to predict the location of genes and their exon-intron...

    Tags: Bioinformatics Software
  • Dendroscope by Daniel Huson et al.

    Dendroscope is an interactive computer software program written in Java for viewing Phylogenetic trees. This program is designed to view trees of all sizes and is very useful for creating figures....

    Latest version of Dendroscope is 3.2.10 and it was released on 2013.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Apache Taverna by Apache Software Foundation (myGrid for 2.x)

    Apache Taverna is an open source software tool for designing and executing workflows, initially created by the myGrid project under the name Taverna Workbench, now a project under the Apache...

    Latest version of Apache Taverna is 2.5 and it was released on 2014-04-16.

    Tags: Workflow Technology, Bioinformatics Software, School Of Computer Science University Of Manchester, Workflow Software, Apache Software Foundation, Apache Software Foundation Projects, Software Using The Apache License
  • BLAST by Altschul SF,Gish W,Miller W,Myers EW,Lipman DJ,NCBI

    In bioinformatics, BLAST for Basic Local Alignment Search Tool is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of proteins or the nucleotides...

    Latest version of BLAST is 2.6.0+ and it was released on 2016-12-07.

    Tags: Bioinformatics Algorithms, Computational Phylogenetics, Bioinformatics Software, Laboratory Software, Publicdomain Software
  • HMMER by Sean Eddy, Travis Wheeler, HMMER development team

    HMMER is a free and commonly used software package for sequence analysis written by Sean Eddy. Its general usage is to identify homologous protein or nucleotide sequences, and to perform sequence...

    Latest version of HMMER is 3.0 and it was released on 2010-03-28.

    Tags: Bioinformatics Software, Free Science Software, Free Software Programmed In C, Computational Science
  • MorphoBank by The MorphoBank Project

    MorphoBank is a web application for collaborative evolutionary research, specifically phylogenetic systematics or cladistics, on the phenotype. Historically, scientists conducting research on...

    Tags: Web Applications, Bioinformatics Software
  • OpenMS

    OpenMS is an open-source project for data analysis and processing in protein mass spectrometry and is released under the 3-clause BSD licence. It supports most common operating systems including...

    Latest version of OpenMS is 2.1.0 and it was released on 2016-11-22.

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Software Using The Bsd License
  • UGENE by Unipro

    UGENE is computer software for bioinformatics. It works on desktop computer operating systems such as Windows, macOS, or Linux. It is released as free and open-source software, under a GNU General...

    Latest version of UGENE is 1.27 and it was released on 2017-08-23.

    Tags: Bioinformatics Software, Free Science Software, Free Software Programmed In C, Computational Science
  • OpenViBE

    OpenViBE is a software platform dedicated to designing, testing and using brain-computer interfaces. The package includes a Designer tool to create and run custom applications, along with several...

    Latest version of OpenViBE is 1.3.0 and it was released on 2016-12-30.

    Tags: Braincomputer Interfacing, Electroencephalography, Evoked Potentials, Free Software, Humancomputer Interaction, Neuroscience Software, Neurotechnology, Realtime Computing, Software Using The Gnu Agpl License
  • VoltDB by VoltDB Inc.

    VoltDB is an in-memory database designed by Michael Stonebraker (who was involved in Ingres and POSTGRES), Sam Madden, and Daniel Abadi. It is an ACID-compliant RDBMS which uses a shared nothing...

    Latest version of VoltDB is 7.0 and it was released on 2017-01-30.

    Tags: Free Database Management Systems, Newsql, Rdbms Software For Linux, Software Using The Gnu Agpl License
  • TokuMX

    TokuMX is an open source distribution of MongoDB which, among other things, replaces the default B-tree data structure found in the basic MongoDB distribution with a Fractal Tree index. It is a...

    Latest version of TokuMX is 2.0.0 and it was released on 2014-09-30.

    Tags: Database Engines, Free Database Management Systems, Nosql, Databaserelated Software For Linux, Software Using The Gnu Agpl License
  • Shinken

    Shinken is an open source computer system and network monitoring software application compatible with Nagios. It watches hosts and services, gathers performance data and alerts users when error...

    Latest version of Shinken is 2.4.3 and it was released on 2016-03-10.

    Tags: Network Management, Internet Protocol Based Network Software, Free Network Management Software, Multiagent Systems, Free Software Programmed In Python, Network Analyzers, Nagios, Software Using The Gnu Agpl License
  • MongoDB by MongoDB Inc.

    MongoDB (from hu'mongo'us) is a free and open-source cross-platform document-oriented database program. Classified as a NoSQL database program, MongoDB uses JSON-like documents with schemas. MongoDB...

    Latest version of MongoDB is 3.4.9 and it was released on 2017-09-11.

    Tags: 2009 Software, Databaserelated Software For Linux, Distributed Computing Architecture, Documentoriented Databases, Free Database Management Systems, Nosql, Software Using The Gnu Agpl License, Structured Storage
  • Mailpile by The Mailpile Team

    The Free software e-mail client Mailpile is one which main focus is privacy with usability. It is a webmail client, though one ran from the users computer, as a downloaded program launched as a...

    Tags: Email Clients, Free Software Programmed In Python, Software Using The Gnu Agpl License, Software Using The Apache License, Macos Email Clients, Email Client Software For Linux, Windows Email Clients, Free Software Webmail
  • Monit by Tildeslash Ltd

    Monit is a free, ] process supervision tool for Unix and Linux. With Monit, system status can be viewed directly from the command line, or via the native]. Monit rose to popularity with Ruby on...

    Latest version of Monit is 5.23.0 and it was released on 2017-06-07.

    Tags: Software Using The Gnu Agpl License, Unix Process And Taskmanagementrelated Software
  • GTM by FIS

    GT.M is a high-throughput key-value database engine optimized for transaction processing. (It is a type also referred to as "schema-less", "schema-free," or "NoSQL.") GT.M is also an application...

    Latest version of GT.M is 6.3-002 and it was released on 2017-08-21.

    Tags: Mumps Implementations, Free Database Management Systems, Structured Storage, Fis, Electronic Health Record Software, Software Using The Gnu Agpl License
  • RStudio by RStudio, Inc.

    RStudio is a free and open-source integrated development environment (IDE) for R, a programming language for statistical computing and graphics. RStudio was founded by JJ Allaire, creator of the...

    Latest version of RStudio is 1.0.153 and it was released on 2017-07-20.

    Tags: Free R Software, R, Science Software For Linux, Software Using The Gnu Agpl License
  • OpenNMS by The Order of the Green Polo,The OpenNMS Group

    OpenNMS is a free and open-source enterprise grade network monitoring and network management platform. It is developed and supported by a community of users and developers as well as by the The...

    Latest version of OpenNMS is 20.0.2 and it was released on 2017-08-17.

    Tags: Network Management, System Administration, Computer Network Analysis, Network Performance, Free Network Management Software, Free Software Programmed In Java, Java Platform Software, Software Using The Gnu Agpl License
  • ownCloud by ownCloud GmbH, Community

    ownCloud is a suite of client-server software for creating file hosting services and using them. ownCloud is functionally very similar to the widely used Dropbox, with the primary functional...

    Latest version of ownCloud is 10.0.3 and it was released on 2017-09-15.

    Tags: Cloud Storage, Free Software For Cloud Computing, Free Software Programmed In Javascript, Free Software Programmed In Php, Software Using The Gnu Agpl License, Companies Based In Lexington Massachusetts
  • Loomio

    Loomio is decision-making software to assist groups with collaborative decision-making processes. It is a free software web application. Users initiate discussions and put up proposals. As...

    Tags: Free Software, Decisionmaking Software, Social Enterprises, Software Using The Gnu Agpl License, Software Companies Of New Zealand
  • Mastodon by Eugen Rochko

    Mastodon is a federated social network, with similar features to Twitter, but administrated as a decentralized federation of servers running open source software. Users belong to a single Mastodon...

    Tags: Microblogging Software, Web Applications, Free Software Websites, Social Media, Social Networking Services, Free Software, Free Software Programmed In Ruby, Software Using The Gnu Agpl License
  • Nextcloud by Nextcloud GmbH., Community

    Nextcloud is a suite of client-server software for creating and using file hosting services. It is functionally similar to Dropbox, although Nextcloud is free and open-source, allowing anyone to...

    Latest version of Nextcloud is 12.0.3 and it was released on 2017-09-20.

    Tags: Cloud Computing, Cloud Storage, File Hosting, Free Software For Cloud Computing, Free Software Programmed In Javascript, Free Software Programmed In Php, Nextcloud, Software Using The Gnu Agpl License
  • Movim by The Movim Project

    Movim (My Open Virtual Identity Manager) is a distributed social network built on top of XMPP, a popular open standards communication protocol. Movim is a free and open source software licensed...

    Latest version of Movim is 0.11 and it was released on 2017-03-18.

    Tags: Social Networking Services, Microblogging Software, Distributed Computing, Free Software, Software Using The Gnu Agpl License
  • GNU social by Evan Prodromou,Matt Lee, Mikael Nordfeldth and

    GNU social (previously known as StatusNet and once known as Laconica) is a free and open source software microblogging server written in PHP that implements the OStatus standard for interoperation...

    Latest version of GNU social is 1.1.2 and it was released on 2014-10-25.

    Tags: Social Networking Services, Microblogging Software, Web Applications, Free Software Websites, Internet Services Supporting Openid, Free Software, Software Using The Gnu Agpl License, Gnu Project Software
  • GroupOffice by Intermesh

    Group-Office is a PHP based dual license commercial/open source groupware and CRM and DMS product developed by the Dutch company Intermesh. The open source version, Group-Office Community, is...

    Latest version of Group-Office is 6.2.4 and it was released on 2016-05-25.

    Tags: Collaboration, Groupware, Free Content Management Systems, Free Software Programmed In Php, Web Applications, Free Groupware, Free Email Software, Software Using The Gnu Agpl License
  • phpList by phpList Ltd.

    phpList is an open source software for managing mailing lists. It is designed for the dissemination of information, such as newsletters, news, advertising to list of subscribers. It is written in...

    Latest version of phpList is 3.3.1 and it was released on 2017-02-14.

    Tags: Free Mailing List Software, Mailing List Software For Linux, Free Software Programmed In Php, Email Marketing Software, Software Using The Gnu Agpl License
  • Kloxo by LxCenter

    Kloxo (formerly known as Lxadmin) is a ] web hosting control panel for the Red Hat and CentOS Linux distributions. Kloxo allows the host administrators to run a combination of lighttpd or Apache...

    Tags: Web Server Management Software, Software Using The Gnu Agpl License
  • BEdita by /

    BEdita is an open source web development framework that features a Content Management System (CMS) out-of-the-box. Current version is 3.1.5, released on 5 March 2012 under Affero General Public...

    Latest version of BEdita is 3.3 " and it was released on 2014-02-28.

    Tags: Content Management Systems, Free Content Management Systems, Free Software, Free Software Programmed In Php, Web Frameworks, Web Development Software, Software Using The Gnu Agpl License
  • KloxoMR by Mustafa Ramadhan

    Kloxo-MR is a free open-source web hosting control panel for Redhat / CentOS 5, 6 and 7 (32bit and 64bit) or their variants. Kloxo-MR is based on Kloxo (formerly known as Lxadmin ) developed by...

    Latest version of Kloxo-MR is 7.0.0.b-2016060903 and it was released on 2016-06-09.

    Tags: Web Server Management Software, Software Using The Gnu Agpl License
  • Mobicents

    Mobicents is an Open Source VoIP Platform written in Java to help create, deploy, manage services and applications integrating voice, video and data across a range of IP and legacy communications...

    Tags: Software Using The Gnu Agpl License, Voip Software
  • Ampache

    Ampache is a ] Web-based Audio file manager / web Media Server. The name is a play on the two words "Amplifier" and "]". It was originally written to take advantage of Apache's Mod_mp3 but has since...

    Latest version of Ampache is 3.8.2 and it was released on Feb 03, 2016.

    Tags: Streaming Software, Free Multimedia Software, Clientserver Media Players, Media Servers, Free Media Players, Software Using The Gnu Agpl License
  • Taiga

    Taiga is a free and open-source project management system for startups, Agile developers, and designers. Its frontend is written in AngularJS and CoffeeScript; backend, in Django and Python. Taiga...

    Latest version of Taiga is 3.1.0 Perovskia Atriplicifolia and it was released on 2017-03-10.

    Tags: Project Management Software, Software Using The Gnu Agpl License, Projects Established In 2016
  • Redbooth by Redbooth, Inc. (formerly Teambox Technologies S.L.Teambox Technologies S.L.)

    Redbooth (formerly Teambox) is a web-based and on-premises workplace collaboration tool and communication...

    Tags: Project Management Software, Free Software Programmed In Ruby, Software Using The Gnu Agpl License
  • Rudder by Normation

    Rudder is an open source audit and configuration management utility to help automate system configuration across large IT infrastructures. Rudder relies on a lightweight local agent installed on...

    Latest version of Rudder is 4.1.3 and it was released on 2017-05-23.

    Tags: Configuration Management, Virtualizationrelated Software For Linux, Software Using The Gnu Agpl License, Linux Configuration Utilities, Macos, Linux Package Managementrelated Software, Unix Package Managementrelated Software, Remote Administration Software, Software Distribution, Free Software Programmed In Scala
  • Gitorious by Powow AS

    Gitorious was a shared web hosting service for collaborative free and open-source software development projects that use the Git revision control system. The name also refers to the free and...

    Latest version of Gitorious is 3.2 and it was released on 2014-12-04.

    Tags: Computing Websites, Internet Services Supporting Openid, Opensource Hosted Development Tools, Opensource Software Hosting Facilities, Project Hosting Websites, Project Management Software, Version Control, Software Using The Gnu Agpl License
  • Tigase by Artur Hefczyc

    Tigase is an open source (AGPL3) project started by Artur Hefczyc in October 2004 to develop an XMPP server implementation in Java. Initially the goal was to develop a fully compliant XMPP server...

    Latest version of Tigase is 7.0.3 and it was released on 2014-04-07.

    Tags: Instant Messaging Server Software, Software Using The Gnu Agpl License, Software Using The Gpl License
  • Oracle NoSQL DB by Oracle Corporation

    Oracle NoSQL Database is a NoSQL-type distributed key-value database from Oracle Corporation. It provides transactional semantics for data manipulation, horizontal scalability, and simple...

    Latest version of Oracle NoSQL DB is 4.5- Oracle NoSQL Database Enterprise Edition and it was released on 2017-08-24.

    Tags: Oracle Software, Nosql, Databaserelated Software For Linux, Big Data Products, Keyvalue Databases, Software Using The Gnu Agpl License
  • Slic3r

    Slic3r' is free software 3D slicing engine for 3D printers. It generates G-code from 3D CAD files (STL or OBJ). Once finished, an appropriate G-code file for the production of the 3D modeled part or...

    Tags: Free Computeraided Manufacturing Software, Software Using The Gnu Agpl License
  • eyeOS

    eyeOS is a web desktop following the cloud computing concept that seeks to enable collaboration and communication among users. It is mainly written in PHP, XML, and JavaScript. It is a private-cloud...

    Latest version of eyeOS is Professional Edition and it was released on 2012-04-03.

    Tags: Web Desktops, Web 20, Cloud Computing, Free Content Management Systems, Free Software Operating Systems, Software Using The Gnu Agpl License
  • Zotero by Center for History and New Media at George Mason University

    Zotero is free and open-source reference management software to manage bibliographic data and related research materials (such as PDF files). Notable features include web browser integration, online...

    Tags: Software That Uses Xul, Reference Management Software, Free Reference Management Software, Library 20, Firefox Addons, Reference, 2006 Software, Software Using The Gnu Agpl License
  • hMailServer by Martin Knafve

    hMailServer is a free email server for Windows created by Martin Knafve. It runs as a Windows service and includes administration tools for management and backup. It has support for IMAP, POP3, and...

    Latest version of hMailServer is 5.6.6 (Build 2383) and it was released on 2016-09-22.

    Tags: Message Transfer Agents, Free Email Server Software, Free Software Programmed In C, Free Software Programmed In C Sharp, Windowsonly Free Software, Software Using The Gnu Agpl License
  • Mnemosyne by Peter Bienstman

    Mnemosyne (named for the Greek goddess of memory, Mnemosyne) is a line of spaced repetition software developed from 2003 until the...

    Latest version of Mnemosyne is 2.5 and it was released on 2017-06-26.

    Tags: 2003 Software, Free Software Programmed In Python, Free Educational Software, Spaced Repetition Software, Educational Software That Uses Qt, Software Using The Gnu Agpl License, Software Using The Lgpl License
  • Booktype by Sourcefabric

    Booktype is a free and open source software for authoring, collaborating, editing, and publishing books to PDF, ePub, .mobi, and HTML formats. It was launched by Sourcefabric in February 2012 when...

    Latest version of Booktype is 2.2 and it was released on 2017-03-02.

    Tags: Free Desktop Publishing Software, 2012 Software, Software Using The Gnu Agpl License
  • MediaGoblin by GNU Project

    GNU MediaGoblin (also shortened to MediaGoblin or GMG) is a free, decentralized Web platform (server software) for hosting and sharing many forms of digital media. It strives to provide an...

    Tags: Free Content Management Systems, Free Image Galleries, Free Server Software, Gnu Project Software, Internet Services Supporting Openid, Software Using The Gnu Agpl License, Video Hosting Software, Web Hosting
  • Ofuz by SQLFusion

    Ofuz is a contact management, task-management, time-tracking, and invoicing software product from SQLFusion. The software was released as a public beta on October 11, 2009. Among other features,...

    Latest version of Ofuz is 0.6 and it was released on September 15, 2010.

    Tags: Free Software Programmed In Php, Free Accounting Software, Software Using The Gnu Agpl License
  • FreePBX by FreePBX Project

    FreePBX is a web-based open source graphical user interface (GUI) that manages Asterisk, a voice over IP and telephony server. FreePBX is licensed under the GNU General Public License version 3. It...

    Tags: Free Voip Software, Unifiedcommunications, Freepbx, Software Using The Gnu Agpl License, Software Using The Gpl License
  • Environment for DeveLoping KDDApplications Supported by IndexStructures by Ludwig Maximilian University of Munich,Heidelberg University,University of Southern Denmark

    ELKI (for Environment for DeveLoping KDD-Applications Supported by Index-Structures) is a knowledge discovery in databases (KDD, "data mining") software framework developed for use in research and...

    Latest version of Environment for DeveLoping KDD-Applications Supported by Index-Structures is 0.7.1 and it was released on 2016-02-11.

    Tags: Data Mining And Machine Learning Software, Free Artificial Intelligence Applications, Free Data Analysis Software, Free Science Software, Free Software Programmed In Java, Software Using The Gnu Agpl License
  • JASP

    JASP is a free and open-source graphical program for statistical analysis, designed to be easy to use, and familiar to users of SPSS. Additionally, JASP provides many Bayesian statistical...

    Latest version of JASP is 0.8.2 and it was released on 2017-08-21.

    Tags: Free Bayesian Statistics Software, Free Educational Software, Free Statistical Software, Software Using The Gnu Agpl License
  • ManuelbastioniLAB by Manuel Bastioni

    ManuelbastioniLAB is a free and open source plug-in for Blender for the parametric 3D modeling of photorealistic humanoid characters. It's developed by the artist and programmer Manuel...

    Latest version of ManuelbastioniLAB is Version 1.5.0 and it was released on April 14, 2017.

    Tags: Free 3d Graphics Software, 3d Computer Graphics Software For Linux, Free Software Programmed In Python, Video Game Development Software, 3d Modeling Software For Linux, Anatomical Simulation, Software Using The Gnu Agpl License
  • XBlock

    XBlock is the SDK for the edX MOOC platform, written in Python2, and announced and released publicly on March 14, 2013. It aims to enable the global software development community to participate in...

    Tags: Crossplatform Software, Educational Software, Free Educational Software, Free Learning Management Systems, Free Learning Support Software, Free Software Programmed In Python, Learning Management Systems, Free Content Management Systems, Virtual Learning Environments, Software Using The Gnu Agpl License
  • SWAD

    SWAD (originally stood for "Sistema Web de Apoyo a la Docencia" in Spanish or "Web System for Education Support", currently stands for "Shared Workspace At a Distance") is a web application to...

    Latest version of SWAD is 16.232.3 and it was released on 2017-06-01.

    Tags: C Software, Educational Software, Elearning, Free Educational Software, Free Learning Management Systems, Free Learning Support Software, Free Software Programmed In C, Learning Management Systems, Schooladministration Software, Virtual Learning Environments, Software Using The Gnu Agpl License
  • FET Free Timetabling Software by Liviu Lalescu, Volker Dirr and others

    FET is a free and open-source time tabling app for automatically scheduling the timetable of a school, high-school or university. FET is written in C++ using the Qt cross-platform application...

    Latest version of FET Free Timetabling Software is 5.31.8 and it was released on 2017-07-05.

    Tags: Educational Software, Crossplatform Free Software, Free Educational Software, Data Management Software, Schooladministration Software, Software Using The Gnu Agpl License
  • Helium V by Helium V IT-Solutions GmbH

    Helium V is an open source ERP suite. It has been developed by Helium V IT-Solutions GmbH in Austria starting in 2005. The industry of initial focus has been electronic manufacturing. The targeted...

    Tags: Free Erp Software, Erp Software, Free Business Software, Enterprise Resource Planning Software For Linux, Software Using The Gnu Agpl License
  • SuiteCRM

    SuiteCRM is a software fork of the popular customer relationship management (CRM) system from SugarCRM. It became popular when SugarCRM decided to stop development of its open source version. It is...

    Latest version of SuiteCRM is 7.8.5 and it was released on 2017-06-15.

    Tags: Free Customer Relationship Management Software, Software Using The Gnu Agpl License
  • OTRS by OTRS AG

    OTRS, an initialism for Open-source Ticket Request System, is a free and open-source trouble ticket system software package that a company, organization, or other entity can use to assign tickets to...

    Latest version of OTRS is 5.0.20 and it was released on 2017-06-06.

    Tags: Free Networkrelated Software, Help Desk Software, Bug And Issue Tracking Software, Free Software Programmed In Perl, Perl Software, Software Using The Gnu Agpl License
  • Kune by Comunes Collective, IEPALA Foundation

    Kune is a free/open source distributed social network focused on collaboration rather than just on communication. That is, it focuses on online real-time collaborative editing, decentralized social...

    Latest version of Kune is 1.0.0 (Codename "free-riders") and it was released on 2015-03-18.

    Tags: Articles Created Via The Article Wizard, Project Hosting Websites, Creative Commonslicensed Websites, Collaborative Projects, Virtual Communities, Online Communities For Social Change, Free Groupware, Free Project Management Software, Multilingual Websites, Community Websites, Social Networking Services, Web Applications, Instant Messaging, Online Chat, Social Information Processing, Groupware, Wikis, Blog Software, Collaborative Realtime Editors, 2012 Software, Electronic Documents, Free Software, Free Software Programmed In Java, Crossplatform Free Software, Internet Properties Established In 2007, Software Using The Gnu Agpl License
  • HumHub by HumHub GmbH & Co. KG

    HumHub is a free and open source social network software coded on top of the Yii PHP framework that provides an easy to use toolkit for creating and launching an own social network. The platform can...

    Latest version of HumHub is 1.0.0 and it was released on 2016-03-27.

    Tags: Business Software, Collaborative Software, Groupware, Social Software, Software Using The Gnu Agpl License
  • SOFA Statistics by Paton-Simpson & Associates Ltd

    SOFA Statistics is an open-source statistical package. The name stands for Statistics Open For All. It has a graphical user interface and can connect directly to MySQL, PostgreSQL, SQLite, MS...

    Latest version of SOFA Statistics is 1.4.6 and it was released on 2016-01-02.

    Tags: Crossplatform Free Software, Crossplatform Software, Free Statistical Software, Numerical Software, Science Software For Linux, Science Software For Macos, Science Software For Windows, Software That Uses Wxpython, Software Using The Gnu Agpl License
  • Noosfero

    Noosfero is a collaborative web platform intended for the creation of social networks. It can be used for creating blogs, discussion areas, online portfolios, event calendars, etc. Noosfero was...

    Latest version of Noosfero is 1.2 and it was released on 2015-08-07.

    Tags: Web Applications, Free Groupware, Social Networking Services, Free Software Programmed In Ruby, Free Content Management Systems, Internet Forum Software, 2009 Software, Brazilian Inventions, Blog Software, Website Management, Software Using The Gnu Agpl License, Project Hosting Websites
  • Bacula by Kern Sibbald, and team

    Bacula is an open-source, enterprise-level computer backup system for heterogeneous networks. It is designed to automate backup tasks that had often required intervention from a systems...

    Latest version of Bacula is 9.0.3 and it was released on 2017-08-08.

    Tags: Free Software Programmed In C, Free Software Programmed In C, Free Backup Software, Backup Software, Backup Software For Linux, 2000 Software, Software Using The Gnu Agpl License
  • POVRay by The POV-Team

    The Persistence of Vision Ray Tracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. It was...

    Latest version of POV-Ray is 3.7.0 and it was released on 2013-11-09.

    Tags: 3d Graphics Software, Amiga Raytracers, Articles With Example Code, Crossplatform Software, Domainspecific Programming Languages, Free 3d Graphics Software, Free Graphics Software, Free Software Programmed In C, Global Illumination Software, Rendering Systems, Software Using The Gnu Agpl License
  • SIPfoundry sipXecs by SIPfoundry

    sipXecs is an open source enterprise communications system. It was initially developed as a proprietary voice over IP telephony server in 2003 by Pingtel Corporation in Boston, MA, and later...

    Latest version of SIPfoundry sipXecs is 14.04.2 and it was released on July 7, 2014.

    Tags: Collaborative Software, Free Voip Software, Instant Messaging, Opensource Cloud Applications, As A Service, Software Using The Gnu Agpl License
  • Zarafa by Zarafa BV

    Zarafa, an open-source groupware application, originated in the city of Delft in the Netherlands. The company that develops Zarafa, previously known as Connectux, is also called Zarafa. The Zarafa...

    Latest version of Zarafa is 7.2.5 and it was released on 2017-01-07.

    Tags: Free Email Software, Free Groupware, Wireless Email, Data Synchronization, Collaborative Software, Groupware, Ajax, Free Networkrelated Software, Software Using The Gnu Agpl License
  • Advanced Simulation Library

    Advanced Simulation Library (ASL) is free and open-source hardware-accelerated multiphysics simulation platform. It enables users to write customized numerical solvers in C++ and deploy them on a...

    Latest version of Advanced Simulation Library is 0.1.7 and it was released on 2016-11-09.

    Tags: Computational Chemistry Software, Computeraided Engineering Software For Linux, Software Using The Gnu Agpl License, Computational Fluid Dynamics, Free Science Software, Open Source Computer Aided Engineering Applications, Articles Containing Video Clips, Gpgpu, Numerical Libraries, C Libraries
  • RapidMiner by RapidMiner

    RapidMiner is a data science software platform developed by the company of the same name that provides an integrated environment for data preparation, machine learning, deep learning, text mining,...

    Latest version of RapidMiner is 7.5 and it was released on 2017-05-03.

    Tags: Computer Vision Software, Data Mining And Machine Learning Software, Image Processing, Neuroscience, Neuroimaging Software, Research And Development In Germany, Software Using The Gnu Agpl License
  • Zfone

    Zfone is software for secure voice communication over the Internet (VoIP), using the ZRTP protocol. It is created by Phil Zimmermann, the creator of the PGP encryption software. Zfone works on top...

    Tags: Voip Software, Cryptographic Software, Internet Privacy Software, Software Using The Gnu Agpl License
  • CiviCRM by CiviCRM LLC

    CiviCRM is a web-based, open source, internationalized suite of computer software for constituency relationship management, that falls under the broad rubric of customer relationship management. It...

    Latest version of CiviCRM is 4.7.21 and it was released on 2017-07-06.

    Tags: Customer Relationship Management Software, Free Customer Relationship Management Software, Free Software Programmed In Php, Joomla Extensions, Software Using The Gnu Agpl License
  • OnlyOffice by Ascensio System SIA

    OnlyOffice (formerly TeamLab), stylized as ONLYOFFICE, is an open source office suite, developed by Ascensio System SIA, a company with headquarters in Riga, Latvia. Solution features online...

    Latest version of OnlyOffice is 9.0 and it was released on 2017-05-10.

    Tags: 2009 Software, Customer Relationship Management Software, Document Management Systems, Project Management Software, Software Using The Gnu Agpl License
  • Odoo by Odoo S.A.

    Odoo is an all-in-one management software that offers a range of business applications that form a complete suite of enterprise management applications. The Odoo solution is ideal for SMEs, but fits...

    Latest version of Odoo is 10.0 and it was released on 2016-10-05.

    Tags: Erp Software, Free Customer Relationship Management Software, Free Accounting Software, Point Of Sale Companies, Free Erp Software, Enterprise Resource Planning Software For Linux, Software Companies Of Belgium, Crm Software Companies, Software Using The Gnu Agpl License, Belgian Brands
  • MakeHuman by The MakeHuman team.

    Makehuman is an open source 3D computer graphics software middleware designed for the prototyping of photo realistic humanoids. It is developed by a community of programmers, artists, and academics...

    Latest version of MakeHuman is 1.1.1 and it was released on 2017-03-05.

    Tags: Free 3d Graphics Software, 3d Modeling Software For Linux, Anatomical Simulation, Free Software Programmed In C, 3d Graphics Software That Uses Qt, Windows Graphicsrelated Software, Macos Graphics Software, Software Using The Gnu Agpl License
  • iText by iText Group NV

    iText is an open source library for creating and manipulating PDF files in Java. iText was written by Bruno Lowagie, Paulo Soares and others. The source code was initially distributed under the...

    Latest version of iText® is 5.5.12 and it was released on 2017-08-18.

    Tags: Free Pdf Software, Free Typesetting Software, Free Software Programmed In C Sharp, Free Software Programmed In Java, Java Platform, Java Libraries, C Sharp Libraries, Software Using The Gnu Agpl License
  • LibrePlan by Igalia

    LibrePlan is a free software web application for project management, developed by the Fundación para o Fomento da Calidade Industrial e Desenvolvemento Tecnolóxico de Galicia, dependent of the...

    Latest version of LibrePlan is 1.4.1 and it was released on 2015-04-21.

    Tags: Free Application Software, Project Management, Free Software Programmed In Java, Free Project Management Software, Java Platform Software, Software Using The Gnu Agpl License
  • OpenBroadcaster by OpenBroadcaster

    OpenBroadcaster is a web-based, open source system to run community radio and television broadcast transmitters with a simple web...

    Latest version of OpenBroadcaster is 4.1.1 and it was released on 2015-07-01.

    Tags: Broadcasting, Community Radio Organizations, Emergency Population Warning Systems, Free Audio Software, Free Multimedia Software, Internet Radio Software, Internet Television, Media Servers, Multimedia Software, Radio Technology, Software That Uses Gstreamer, Software Using The Gnu Agpl License, Streaming Media Systems, Streaming Software, Emergency Management Software
  • BioFabric by Institute for Systems Biology

    BioFabric is an open source software application for graph drawing. It presents graphs as a node-link diagram, but unlike other graph drawing tools that depict the nodes using discrete symbols, it...

    Latest version of BioFabric is 1.0.0 and it was released on 27 July 2012.

    Tags: Systems Biology, Graph Drawing Software, Crossplatform Software, Java Platform Software
  • BioTapestry by Institute for Systems Biology

    BioTapestry is an open source software application for modeling and visualizing gene regulatory networks...

    Latest version of BioTapestry is 7.0.0 and it was released on 22 September 2014.

    Tags: Systems Biology, Graph Drawing Software, Crossplatform Software, Java Platform Software
  • PathVisio

    PathVisio is a free open-source pathway analysis and drawing software. It allows drawing, editing, and analyzing biological pathways. Visualization of ones experimental data on the pathways for...

    Latest version of PathVisio is 3.2.4 and it was released on November 24, 2016.

    Tags: Free Bioinformatics Software, Systems Biology, Data Visualization Software, Mathematical And Theoretical Biology, Crossplatform Software, Java Platform Software
  • Virtual Cell

    Virtual Cell (VCell) is an open-source software platform for modeling and simulation of living organisms, primarily cells. It has been designed to be a tool for a wide range of scientists, from...

    Latest version of Virtual Cell is 6.1 and it was released on {{Start date and age|2017|04}}.

    Tags: Mathematical And Theoretical Biology, Systems Biology, Numerical Software, Numerical Differential Equations, Free Science Software