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Jmol

Molecular modelling

Jmol Description
Jmol is computer software for molecular modelling chemical structures in 3-dimensions. Jmol returns a 3D representation of a molecule that may be used as a teaching tool, or for research e.g., in chemistry and biochemistry.
It is written in the programming language Java, so it can run on the operating systems Windows, macOS, Linux, and Unix, if Java is installed. It is free and open-source software released under a GNU Lesser General Public License (LGPL) version 2.0. A standalone application and a software development kit (SDK) exist that can be integrated into other Java applications, such as Bioclipse and Taverna.
A popular feature is an applet that can be integrated into web pages to display molecules in a variety of ways.
For example, molecules can be displayed as ball-and-stick models, space-filling models, ribbon diagrams, etc.
Jmol supports a wide range of chemical file formats, including Protein Data Bank (pdb), Crystallographic Information File (cif), MDL Molfile (mol), and Chemical Markup Language (CML). There is also a JavaScript-only (HTML5) version, JSmol, that can be used on computers with no Java.
The Jmol applet, among other abilities, offers an alternative to the Chime plug-in, which is no longer under active development. While Jmol has many features that Chime lacks, it does not claim to reproduce all Chime functions, most notably, the Sculpt mode. Chime requires plug-in installation and Internet Explorer 6.0 or Firefox 2.0 on Microsoft Windows, or Netscape Communicator 4.8 on Mac OS 9. Jmol requires Java installation and operates on a wide variety of platforms. For example, Jmol is fully functional in Mozilla Firefox, Internet Explorer, Opera, Google Chrome, and Safari.
A list below shows Jmol alternatives which were either selected by us or voted for by users. You can filter this list by tags and platforms

Jmol Alternatives

  • UCSF Chimera by Resource for Biocomputing, Visualization, and Informatics (RBVI), UCSF

    UCSF Chimera (or simply Chimera) is an extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies,...

    Latest version of UCSF Chimera is 1.11.2 and it was released on 2016-12-02.

    Tags: Bioinformatics Software, Freeware, Molecular Modelling Software, Science Software
  • TreeFinder by Gangolf Jobb

    Treefinder is a computer program for the likelihood-based reconstruction of phylogenetic trees from molecular sequences. It was written by Gangolf Jobb, a former researcher at the University of...

    Latest version of TreeFinder is march2011 and it was released on 2011-03-01.

    Tags: Computational Phylogenetics, Bioinformatics Software, Science Software, Molecular Biology, Genetics
  • TCoffee by Cédric Notredame, Centro de Regulacio Genomica (CRG) - Barcelona

    T-Coffee (Tree-based Consistency Objective Function For alignment Evaluation) is a multiple sequence alignment software using a progressive approach. It generates a library of pairwise alignments to...

    Latest version of T-Coffee is 11.00.8cbe486 and it was released on 2014-08-13.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • SPAdes by St. Petersburg State University, Russia,St. Petersburg Academic University, Russia,University of California, San Diego, USA

    SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. However, it might not be suitable for large genomes...

    Latest version of SPAdes is 3.10.1 and it was released on March 1st, 2017.

    Tags: Bioinformatics Algorithms, Bioinformatics Software, Dna Sequencing, Metagenomics Software
  • SEQUEST

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    Tags: Proteomics, Bioinformatics Software, Mass Spectrometry Software
  • by Bennett N.F., Ganesan N Georgetown University

    Sequerome is a web-based Sequence profiling tool for integrating the results of a BLAST sequence-alignment report with external research tools and servers that perform advanced sequence...

    Tags: Bioinformatics Software, Freeware
  • RasMol by Herbert J. Bernstein

    RasMol is a computer program written for molecular graphics visualization intended and used mainly to depict and explore biological macromolecule structures, such as those found in the Protein Data...

    Latest version of RasMol is 2.7.5.1 and it was released on 2009-07-17.

    Tags: Bioinformatics Software, Molecular Modelling Software, Free Science Software, Free Software Programmed In C, Free Educational Software
  • PICRUSt by Morgan Langille,Jesse Zaneveld,Daniel McDonald,Greg Caporaso,Gavin Douglas

    PICRUSt is a bioinformatics software package. The name is an abbreviation for Phylogenetic Investigation of Communities by Reconstruction of Unobserved States. The tool serves in the field of...

    Tags: Metagenomics, Bioinformatics Software, Environmental Microbiology
  • Phyre2 by {{Plainlist| * Lawrence Kelley * Bob Maccallum * Benjamin Jefferys * Alex Herbert * Riccardo Bennett-Lovsey *Michael Sternberg}}

    Phyre and Phyre2 (Protein Homology/AnalogY Recognition Engine; pronounced as 'fire') are web-based services for protein structure prediction that are free for non-commercial use. Phyre is among the...

    Latest version of Phyre2 is 2.0 and it was released on 2011-02-23.

    Tags: Bioinformatics Software, Computational Science
  • PHYLogeny Inference Package by University of Washington

    PHYLogeny Inference Package (PHYLIP) is a free computational phylogenetics package of programs for inferring evolutionary trees (phylogenies). It consists of 35 portable programs, i.e., the source...

    Latest version of PHYLogeny Inference Package is 3.696 and it was released on 2014-11-02.

    Tags: Computational Phylogenetics, Bioinformatics Software
  • OpenChrom by Philip Wenig, Alexander Kerner, Lorenz Gerber, Matthias Mailänder, ...

    OpenChrom is an open source software for the analysis and visualization of mass spectrometric and chromatographic data. Its focus is to handle native data files from several mass spectrometry...

    Latest version of OpenChrom is 1.2.0 and it was released on 2017-08-25.

    Tags: Bioinformatics Software, Mass Spectrometry Software, Chemistry Software For Linux, Science Software For Macos, Science Software For Windows, Chromatography Software, Eclipse Software
  • OLIGO Primer Analysis Software by Molecular Biology Insights, Inc.

    OLIGO Primer Analysis Software was the first publicly available software for DNA primer design. The first papers describing this software were published in 1989 and 1990, and consecutive upgrades in...

    Latest version of OLIGO Primer Analysis Software is 7.54 and it was released on March 23, 2011.

    Tags: Bioinformatics Software
  • MUltiple Sequence Comparison by LogExpectation by drive5

    MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is computer software for multiple sequence alignment of protein and nucleotide sequences. It is licensed as public domain. The method was...

    Latest version of MUltiple Sequence Comparison by Log-Expectation is 3.8.31 and it was released on 2016-08-18.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Modeller by University of California, San Francisco,Accelrys

    Modeller, often stylized as MODELLER, is a computer program used for homology modeling to produce models of protein tertiary structures and quaternary structures (rarer). It implements a method...

    Latest version of Modeller is 9.19 and it was released on 2017-07-25.

    Tags: Molecular Modelling Software, Bioinformatics Software, Computational Biology
  • MEGAN by Daniel Huson et al.

    MEGAN ("MEtaGenome ANalyzer") is a computer program that allows optimized analysis of large metagenomic datasets. Metagenomics is the analysis of the genomic sequences from a usually uncultured...

    Latest version of MEGAN is 6.4 and it was released on 2016.

    Tags: Metagenomics Software, Bioinformatics Software, Computational Phylogenetics, Genetics, Molecular Biology
  • Molecular Evolutionary Genetics Analysis by Pennsylvania State University

    Molecular Evolutionary Genetics Analysis (MEGA) is computer software for conducting statistical analysis of molecular evolution and for constructing phylogenetic trees. It includes many...

    Latest version of Molecular Evolutionary Genetics Analysis is 7.0.26 and it was released on {{Start date and age|2017|05}}.

    Tags: Data Visualization Software, Bioinformatics Software
  • Mascot

    Mascot is a software search engine that uses mass spectrometry data to identify proteins from peptide sequence databases. Mascot is widely used by research facilities around the world. Mascot uses a...

    Latest version of Mascot is 2.6.00 and it was released on {{Start date and age|2016|12|df=yes}}.

    Tags: Proteomics, Bioinformatics Software, Mass Spectrometry Software
  • MacVector by MacVector, Inc.

    MacVector is a commercial sequence analysis application for Apple Macintosh computers running Mac OS X. It is intended to be used by molecular biologists to help analyze, design, research and...

    Latest version of MacVector is 15.5.3 and it was released on [wiki=ecb0313c48409e389f36a444b070e0da]10 July 2016[/wiki].

    Tags: Bioinformatics Software, Computational Science
  • Kepler Scientific Workflow System

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    Latest version of Kepler Scientific Workflow System is 2.5 and it was released on 2015-10-28.

    Tags: Workflow Technology, Bioinformatics Software
  • ITASSER by Yang Zhang Lab

    I-TASSER (Iterative Threading ASSEmbly Refinement) is a bioinformatics method for predicting three-dimensional structure model of protein molecules from amino acid sequences. It detects structure...

    Tags: Bioinformatics, Bioinformatics Software
  • HHsearch by Johannes Söding

    HHsearch is an open-source software program for protein sequence searching that is part of the free HH-suite software package. HHpred is a free protein function and protein structure prediction...

    Latest version of HHsearch is 2.0.16 and it was released on 2013-02-18.

    Tags: Bioinformatics Software, Computational Science
  • HHsuite by Johannes Söding, Michael Remmert, Andreas Biegert, Andreas Hauser, Markus Meier, Martin Steinegger

    The HH-suite is an open-source software package for sensitive protein sequence searching. It contains programs that can search for similar protein sequences in protein sequence databases. These...

    Latest version of HH-suite is 2.0.16 and it was released on 2013-02-18.

    Tags: Bioinformatics Software, Computational Science
  • geWorkbench by Columbia University,,First Genetic Trust,National Cancer Institute

    geWorkbench (genomics Workbench) is an open-source software platform for integrated genomic data analysis. It is a desktop application written in the programming language Java. geWorkbench uses a...

    Latest version of geWorkbench is 2.6.0.3 and it was released on 2016-12-21.

    Tags: Bioinformatics Software, Free Software, Cluster Analysis, Systems Biology, Protein Structure, Gene Expression
  • GenMAPP by Alexander Pico, Kristina Hanspers, Nathan Salomonis, Kam Dahlquist, Scott Doniger, Jeff Lawlor, Alex Zambon, Lynn Ferrante, Karen Vranizan, Steven C. Lawlor, Bruce Conklin

    GenMAPP (Gene Map Annotator and Pathway Profiler) is a free, open-source bioinformatics software tool designed to visualize and analyze genomic data in the context of pathways (metabolic,...

    Tags: Bioinformatics Software, Free Science Software, Systems Biology, Windowsonly Free Software
  • GENESIS

    GENESIS (The GEneral NEural SImulation System) is a simulation environment for constructing realistic models of neurobiological systems at many levels of scale including: sub-cellular processes,...

    Latest version of GENESIS is 2.4 and it was released on {{Start date and age|2014|11}}.

    Tags: 1988 Software, Bioinformatics Software, Artificial Intelligence, Software Using The Gpl License
  • GeneMark by Georgia Institute of Technology

    GeneMark is a generic name for a family of ab initio gene prediction programs developed at the Georgia Institute of Technology in Atlanta. Developed in 1993, original GeneMark was used in 1995 as a...

    Tags: Metagenomics Software, Mathematical And Theoretical Biology, Genomics, Bioinformatics Software
  • GeneNetwork by GeneNetwork Development Team, University of Tennessee

    GeneNetwork is a combined database and open source bioinformatics data analysis software resource for systems genetics. This resource is used to study gene regulatory networks that link DNA sequence...

    Latest version of GeneNetwork is 2.0 and it was released on 2017-06-02.

    Tags: Biological Databases, Systems Biology, Bioinformatics Software, Software Using The Gnu Agpl License
  • Galaxy

    Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not...

    Latest version of Galaxy is 17.01 and it was released on 2017-02-23.

    Tags: Bioinformatics Software, Free Software Projects, Workflow Software
  • FastPCR

    FastPCR is an integrated tool for PCR primers or probes design, in silico PCR, oligonucleotide assembly and analyses, alignment and repeat...

    Tags: Bioinformatics, Bioinformatics Software, Polymerase Chain Reaction
  • DAVID Bioinformatics Resources by Laboratory of Immunopathogenesis and Bioinformatics

    DAVID (the Database for Annotation, Visualization and Integrated Discovery) is a free online url=://david.abcc.ncifcrf.gov The DAVID Bioinformatics Resources consists of the DAVID Knowledgebase and...

    Latest version of DAVID Bioinformatics Resources is 6.7 and it was released on 2010-01-27.

    Tags: Biological Databases, Bioinformatics Software, Laboratory Software, Systems Biology
  • CSBLAST by Angermueller C, Biegert A, and Soeding J

    CS-BLAST (Context-Specific BLAST) is a tool that searches a protein sequence that extends BLAST (Basic Local Alignment Search Tool), (Basic Local Alignment Search Tool) using context-specific...

    Latest version of CS-BLAST is 2.2.3 and it was released on 2013-12-07.

    Tags: Bioinformatics Software, Computational Science
  • cTAKES by Apache Software Foundation

    Apache cTAKES: clinical Text Analysis and Knowledge Extraction System is an open-source natural language processing system for information extraction from electronic health record clinical...

    Tags: Apache Software Foundation Projects, Electronic Health Record Software, Natural Language Processing Software, Free Healthcare Software, Bioinformatics Software
  • Coot by Paul Emsley,Kevin D. Cowtan

    The program Coot (Crystallographic Object-Oriented Toolkit) is used to display and manipulate atomic models of macromolecules, typically of proteins or nucleic acids, using 3D computer graphics. It...

    Latest version of Coot is 0.8.7 and it was released on 2016-11-08.

    Tags: Crystallography Software, Molecular Modelling Software, Bioinformatics Software, Free Science Software, Free Chemistry Software, Science Software That Uses Gtk, Science Software For Linux
  • Chemistry Development Kit by The CDK Project

    The Chemistry Development Kit (CDK) is computer software, a library in the programming language Java, for chemoinformatics and bioinformatics. It is available for Windows, Linux, Unix, and macOS. It...

    Tags: Bioinformatics Software, Chemistry Software For Linux, Computational Chemistry Software, Free Chemistry Software, Free Software Programmed In Java
  • Biopython

    The Biopython Project is an open-source collection of non-commercial Python tools for computational biology and bioinformatics, created by an international association of developers. It contains...

    Latest version of Biopython is 1.70 and it was released on 2017-07-11.

    Tags: Articles With Example Python Code, Bioinformatics Software, Computational Science, Python Scientific Libraries
  • BioPerl

    BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral role in the Human Genome...

    Latest version of BioPerl is 1.6.924 and it was released on 2014-07-10.

    Tags: Bioinformatics Software, Perl Software, Free Bioinformatics Software
  • BioJava

    BioJava is an open-source software project dedicated to provide Java tools to process biological data. BioJava is a set of library functions written in the programming language Java for manipulating...

    Latest version of BioJava is 4.2.1 and it was released on 2016-01-15.

    Tags: Bioinformatics Software, Java Platform Software
  • Bioconductor

    Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. Bioconductor is...

    Latest version of Bioconductor is 3.5 and it was released on 2017-04-25.

    Tags: Bioinformatics Software, Free Bioinformatics Software, Free Science Software, Free R Software, Science Software For Macos, Science Software For Windows, Science Software For Linux
  • Bioclipse by The Bioclipse Project

    The Bioclipse project is a Java-based, open source, visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). It gained scripting functionality in 2009. Like...

    Tags: Bioinformatics Software, Cheminformatics, Java Platform Software, Free Chemistry Software
  • BioBIKE

    BioBike(nee. BioLingua ) is a cloud-based, through-the-web programmable (Paas) symbolic biocomputing and bioinformatics platform that aims to make computational biology, and especially intelligent...

    Tags: Bioinformatics Software, Free Software Projects, Cloud Computing, Cloud Platforms
  • BioloMICS by BioAware SA NV

    BioloMICS is a bioinformatics software application developed by the company BioAware SA NV. It is tool allowing specialized and scientific biological databases to be created to fit the specific...

    Tags: Bioinformatics Software, Biological Databases
  • BALL project by BALL project team

    BALL (pronounced "ball") is computer software consisting of the versatile C++ class framework Biochemical Algorithms Library (BALL), a set of algorithms and data structures for molecular modelling...

    Latest version of BALL project is 1.4.2 and it was released on 2013-01-28.

    Tags: C Libraries, Computational Chemistry Software, Molecular Modelling Software, Bioinformatics Software, Free Bioinformatics Software, Chemistry Software For Linux, Science Software That Uses Qt, Articles With Example C Code
  • ArrayTrack by U.S. Food and Drug Administration

    ArrayTrack is a multi-purpose bioinformatics tool primarily used for microarray data management, analysis, and interpretation. ArrayTrack was developed to support in-house filter array research for...

    Latest version of ArrayTrack is 3.5.0 and it was released on 2010-03-03.

    Tags: Bioinformatics Software, Microarrays
  • BAliPhy by Benjamin Redelings

    BAli-Phy is a free software program for simultaneously estimating a multiple sequence alignment and its phylogenetic tree. BAli-Phy achieves high accuracy in alignment estimation by using...

    Latest version of BAli-Phy is 2.3.8 and it was released on {{release date and age|16|1|30|df=yes}}.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Anduril by University of Helsinki

    Anduril is an open source component-based workflow framework for scientific data analysis developed at the Systems Biology Laboratory, University of Helsinki. Anduril is designed to enable...

    Latest version of Anduril is 1.2.23 and it was released on 2014-06-24.

    Tags: Workflow Technology, Bioinformatics Software
  • Pipeline Pilot by Accelrys

    Pipeline Pilot is the authoring tool for the Accelrys Enterprise Platform. It is a scientific visual and dataflow programming language, used in various scientific domains, such as cheminformatics...

    Latest version of Pipeline Pilot is 8.5 CU3 and it was released on {{Start date|2012|05||df=yes/no}}.

    Tags: Science Software, Enterprise Application Integration, Extract Transform Load Tools, Bioinformatics Software, Computational Chemistry Software, Computer Vision Software, Data Analysis Software, Data Mining And Machine Learning Software, Data Visualization Software, Laboratory Software, Mass Spectrometry Software, Natural Language Processing Software, Numerical Software, Plotting Software, Proprietary Software, Visual Programming Languages, Articles Created Via The Article Wizard
  • XRATE by Ian Holmes (UC Berkeley)

    XRATE is a program for prototyping phylogenetic hidden Markov models and stochastic context-free grammars. It is used to discover patterns of evolutionary conservation in sequence alignments. The...

    Tags: Bioinformatics Software
  • WHAT IF by University of Groningen;,EMBL,Heidelberg;,CMBI,Radboud University Nijmegen;,Radboud University Nijmegen Medical Centre (Radboudumc),WHAT IF Foundation

    WHAT IF is a computer program used in a wide variety of computational (in silico) macromolecular structure research fields. The software provides a flexible environment to display, manipulate, and...

    Latest version of WHAT IF is 6.0 and it was released on {{Start date and age|2016|df=yes}}.

    Tags: Molecular Modelling Software, Bioinformatics Software, Protein Structure
  • ViennaRNA Package by Institut für theoretische Chemie, Währingerstr

    The ViennaRNA Package is a set of standalone programs and libraries used for prediction and analysis of RNA secondary structures. The source code for the package is distributed freely and compiled...

    Latest version of ViennaRNA Package is v2.3.3 and it was released on 2017-01-24.

    Tags: Bioinformatics Software, Bioinformatics Algorithms, Computational Biology
  • Vector NTI by Life Technologies

    Vector NTI is a commercial bioinformatics software package used by many life scientists to work, among other things, with nucleic acids and proteins in silico .]It]allows researchers to, for...

    Latest version of Vector NTI is Vector NTI Express v1.1.1 (Mac & Windows); Vector NTI Advance v11.5.2 (Windows & Mac w/PC Emulation) and it was released on 2012-09-20.

    Tags: Bioinformatics Software
  • TPP by Institute for Systems Biology

    The Trans-Proteomic Pipeline (TPP) is an open-source data analysis software for proteomics developed at the Institute for Systems Biology (ISB) by the Ruedi Aebersold group under the Seattle...

    Latest version of TPP is 5.0.0 and it was released on 2016-10-11.

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Health Sciences
  • taveRNA by Simon Fraser University

    taveRNA is a software suite for RNA/DNA secondary structure. It is developed in the laboratories for computational biology of the School of Computing Science at the Simon Fraser University. The...

    Tags: Bioinformatics Software, Simon Fraser University
  • TimeTree

    TimeTree is a free public database developed by S. Blair Hedges and Sudhir Kumar, now at Temple University, for presenting times of divergence in the tree of life. The basic concept has been to...

    Tags: Bioinformatics Software
  • Staden Package by James Bonfield, et al.

    The Staden Package is computer software, a set of tools for DNA sequence assembly, editing, and sequence analysis. It is open-source software, released under a BSD 3-clause...

    Latest version of Staden Package is 2.0.0b9 and it was released on 2012-01-24.

    Tags: Bioinformatics Software, Computational Science
  • Sirius by San Diego Supercomputer Center

    Sirius is a molecular modelling and analysis system developed at San Diego Supercomputer Center. Sirius is designed to support advanced user requirements that go beyond simple display of small...

    Latest version of Sirius is 1.2 and it was released on 2008-11-18.

    Tags: Molecular Modelling Software, Bioinformatics Software
  • ShelXle by Christian B. Hübschle

    The program ShelXle is a graphical user interface for the structure refinement program SHELXL. ShelXle combines an editor with syntax highlighting for the SHELXL-associated .ins (input) and .res...

    Latest version of ShelXle is 1.0.825 and it was released on 2017-01-28.

    Tags: Crystallography Software, Molecular Modelling Software, Bioinformatics Software, Free Science Software
  • SeqCorator by NoeGen Inc.

    SeqCorator is a bioinformatics software which can run in multiple operating systems (Windows, Mac OS, Unix/Linux) with the same...

    Latest version of SeqCorator is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • Scigress by Fujitsu Limited

    Scigress, stylized SCiGRESS, is a software suite for molecular modelling, computational chemistry, drug design, and materials science, a successor to Computer Aided Chemistry (CAChe)...

    Latest version of Scigress is 2.7(3.2) and it was released on {{Start date and age|2016|05}}.

    Tags: Molecular Modelling Software, Computational Chemistry, Molecular Modelling, Bioinformatics Software, Physics Software, Computational Chemistry Software
  • QuteMol by ISTI,CNR

    QuteMol is an open source, interactive, molecular visualization system. QuteMol utilizes the current capabilities of modern GPUs through OpenGL shaders to offer an array of innovative visual...

    Latest version of QuteMol is 0.4.1 and it was released on 2007-06-06.

    Tags: Molecular Modelling Software, Free Science Software, Chemistry Software For Linux, Free 3d Graphics Software, Free Software Programmed In C, Bioinformatics Software, Software That Uses Wxwidgets
  • ProteoWizard

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    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Software Using The Apache License
  • PrimerPlex by PREMIER Biosoft

    PrimerPlex designs oligos for standard multiplex PCR assays and for bead-based suspension array systems such as BioPlex-200 and Luminex 100/200 based on xMAP technology. The assays are used for...

    Tags: Bioinformatics Software
  • Primer Premier by Premier Biosoft

    Primer Premier software combines design of primers for various PCR applications under one common platform. The software supports design of degenerate primers on alignments for amplifying related set...

    Tags: Bioinformatics Software
  • Phyloscan by Wadsworth Center, New York State Department of Health

    Phyloscan is a web service for DNA sequence analysis that is free and open to all users (without login requirement). For locating matches to a user-specified sequence motif for a regulatory binding...

    Latest version of Phyloscan is 2.2 and it was released on 2010-01-28.

    Tags: Bioinformatics, Bioinformatics Software, Computational Science
  • Phylogenetic Analysis Using Parsimony and other methods

    PAUP* (Phylogenetic Analysis Using Parsimony *and other methods) is a computational phylogenetics program for inferring evolutionary trees (phylogenies), written by David L. Swofford. Originally, as...

    Tags: Computational Phylogenetics, Bioinformatics Software
  • NoePrimer by NoeGen Inc.

    NoePrimer is a bioinformatics software which can run in multiple operating systems (windows, Mac OS, Unix/Linux) with the same...

    Latest version of NoePrimer is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • Newbler by 454 Life Sciences

    Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life...

    Latest version of Newbler is v2.7 and it was released on 2012-02-28.

    Tags: Bioinformatics Software, Computational Science
  • Metascape Bioinformatics Resources by Sanford Burnham, UCSD, GNF

    Metascape is a free gene annotation and analysis resource that helps biologists make sense of one or multiple gene lists. Metascape provides automated meta-analysis tools to understand either common...

    Latest version of Metascape Bioinformatics Resources is 3.0 and it was released on 2016-11-02.

    Tags: Biological Databases, Bioinformatics Software, Laboratory Software, Systems Biology
  • Mesquite A modular system for evolutionary analysis

    Mesquite is a software package primarily designed for phylogenetic analyses. It was developed as a successor to MacClade, when the authors recognized that implementing a modular architecture in...

    Latest version of Mesquite: A modular system for evolutionary analysis is 3.2 and it was released on 2017-01-01.

    Tags: Computational Phylogenetics, Bioinformatics Software, Phylogenetics
  • Mega2 by Daniel E. Weeks, Robert V. Baron, Justin R. Stickel.

    Mega2 (short for manipulation environment for genetic analysis) allows the applied statistical geneticist to convert one's data from several input formats to a large number output formats suitable...

    Latest version of Mega2 is 4.9.2 and it was released on 2017-06-13.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • MAVID by Nicolas Bray (UC Berkeley), Lior Pachter (UC Berkeley)

    MAVID is a multiple sequence alignment program suitable for the alignment of large numbers of DNA sequences. The sequences can be small mitochondrial genomes or large genomic regions up to megabases...

    Tags: Bioinformatics Software, Computational Phylogenetics
  • LabKey Server by LabKey

    LabKey Server is free, open source software available for scientists to integrate, analyze, and share biomedical research data. The platform provides a secure data repository that allows web-based...

    Latest version of LabKey Server is 17.2 and it was released on 2017-07-14.

    Tags: Bioinformatics Software, Free Bioinformatics Software, Free Science Software, Mass Spectrometry Software, Proteomics, Science Software For Windows, Science Software For Linux, Science Software For Macos
  • Jalview by Andrew Waterhouse, James Procter, David Martin and Geoffrey Barton at the University of Dundee.,Original version by Michele Clamp, James Cuff, Stephen Searle, Geoffrey Barton.

    Jalview is a piece of bioinformatics software that is used to look at and edit multiple sequence alignments. It is written in the Java programming language. The programme was originally written by...

    Latest version of Jalview is 2.10.1 and it was released on 2016-11-29.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Integrated Genome Browser

    Integrated Genome Browser (IGB) (pronounced Ig-Bee) is an open source genome browser, a visualization tool used to observe biologically-interesting patterns in genomic data sets, including sequence...

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • IMOD by David Mastronarde et al. at the Boulder Laboratory for 3-D Electron Microscopy of Cells

    IMOD is an open-source, cross-platform suite of modeling, display and image processing programs used for 3D reconstruction and modeling of microscopy images with a special emphasis on electron...

    Latest version of IMOD is 4.3.7 and it was released on February 23, 2012.

    Tags: Bioinformatics Software, Science Software, Freeware
  • HyPhy by Sergei L Kosakovsky Pond, Art FY Poon, Steven Weaver, N. Lance Hepler, Martin Smith.

    HYPHY is a free multiplatform (Mac, Windows and UNIX) Computational phylogenetics software package intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to...

    Latest version of HyPhy is June, 2012 and it was released on 2012-06-21.

    Tags: Computational Phylogenetics, Bioinformatics Software
  • GESS by NCSS, LLC

    GESS is a computer program for analyzing gene expression data obtained from microarrays. NCSS LLC is the name of the company that produces GESS. NCSS LLC also produces PASS (Power Analysis and...

    Latest version of GESS is GESS 2006 and it was released on May, 2006.

    Tags: Bioinformatics Software, Microarrays
  • GENtle by Magnus Manske

    GENtle is a free software under GPL...

    Latest version of GENtle is 1.9.0 and it was released on 2006-04-07.

    Tags: Bioinformatics Software, Free Science Software, Science Software For Linux, Software That Uses Wxwidgets
  • GenomeSpace by Broad Institute

    GenomeSpace is an environment for genomics software tools and applications. It helps users manage their analysis workflows involving multiple diverse tools, including web applications and desktop...

    Latest version of GenomeSpace is beta 5.0 and it was released on {{Start date and age|2012|04}}.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • GenGIS by Donovan Parks, Mike Porter, Timothy Mankowski, Suwen Wang, Sylvia Churcher, Alex Keddy, Christian Blouin, Jacqueline Whalley, Stephen Brooks, Rob Beiko

    GenGIS merges geographic, ecological and phylogenetic biodiversity data in a single interactive visualization and analysis environment. A key feature of GenGIS is the testing of geographic axes that...

    Latest version of GenGIS is 2.4.1 and it was released on 2015.

    Tags: Bioinformatics Software, Biogeography, Genetics, Molecular Biology
  • GenePattern by Broad Institute

    GenePattern is a freely available computational biology open-source software package developed at the Broad Institute of MIT and Harvard for the analysis of genomic data. Designed to enable...

    Latest version of GenePattern is 3.9.8 and it was released on June 2016.

    Tags: Bioinformatics Software, Dna Sequencing, Gene Expression
  • Gene Designer by DNA2.0

    Gene Designer is a computer software package for bioinformatics. It is used by molecular biologists from academia, government, and the pharmaceutical, chemical, agricultural, and biotechnology...

    Latest version of Gene Designer is 2.01.191 and it was released on 2015-10-09.

    Tags: Bioinformatics, Bioinformatics Software
  • Foldit by University of Washington, Center for Game Science, Department of Biochemistry

    Foldit is an online puzzle video game about protein folding. It is part of an experimental research project developed by the University of Washington, Center for Game Science, in collaboration with...

    Tags: 2008 Video Games, Linux Games, Macos Games, Windows Games, Puzzle Video Games, Humanbased Computation Games, Luascripted Video Games, Bioinformatics Software, Computational Biology, Molecular Biology, Protein Folding, Protein Structure, Gamification
  • FlyExpress

    FlyExpress is a free database that collects the expression patterns of Drosophila melanogaster in embryogenesis via a series of images submitted from BDGP, Fly-FISH and publications from other...

    Tags: Insect Developmental Biology, Model Organism Databases, Bioinformatics Software
  • FASTA by Pearson W.R.

    FASTA is a DNA and protein sequence alignment software package first described (as FASTP) by David J. Lipman and William R. Pearson in 1985. Its legacy is the FASTA format which is now ubiquitous in...

    Tags: Computational Phylogenetics, Bioinformatics Software
  • esyN

    esyN (Easy Networks) is an open source bioinformatics web-tool for visualizing, building and analysing molecular interaction networks. esyN is based on cytoscape.js and its aim is to make it easy...

    Latest version of esyN (Easy Networks) is 2.1 and it was released on 2016-01-17.

    Tags: Bioinformatics Software, Proteomics, Metabolomic Databases, Free Software
  • eMovie by Israel Structural Proteomics Center

    eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of...

    Tags: Molecular Modelling Software, Data Visualization Software, Bioinformatics Software
  • DNADynamo by BlueTractorSoftware Ltd

    DNADynamo is a commercial DNA sequence analysis software package produced by Blue Tractor Software Ltd that runs on Microsoft Windows, Mac OS X and Linux It is used by molecular biologists to...

    Tags: Bioinformatics Software, Computational Science
  • DECIPHER by Erik Wright

    Decipher, stylized as DECIPHER, is a software toolset that can be used to decipher and manage biological sequences efficiently using the programming language R. Some functions of the program are...

    Latest version of DECIPHER is 2.2.0 and it was released on {{Start date and age|2016}}.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Cytoscape

    Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression profiles and other state data. Additional features...

    Latest version of Cytoscape is 3.5.1 and it was released on 2017-04-26.

    Tags: Bioinformatics Software, Systems Biology, Mathematical And Theoretical Biology, Graph Drawing Software, Crossplatform Software, Java Platform Software
  • CLUSTAL by {{Plainlist| * Des Higgins * Fabian Sievers * David Dineen * Andreas Wilm (all at the Conway Institute, UCD)}}

    Clustal is a series of widely used computer programs used in Bioinformatics for multiple sequence...

    Latest version of CLUSTAL is 1.2.2 and it was released on 2016-07-01.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • CheShift2

    CheShift-2 (pronounced /tʃeʃɪft/) is an application created to compute 13Cα and 13Cβ protein chemical shifts and to validate protein structures. It is based on quantum mechanics computations of 13Cα...

    Latest version of CheShift-2 is 3.0 and it was released on 2013-09-01.

    Tags: Bioinformatics Software
  • Budapest Reference Connectome by Balázs Szalkai, Csaba Kerepesi, Bálint Varga, Vince Grolmusz

    The Budapest Reference Connectome server computes the frequently appearing anatomical brain connections of 418 healthy subjects. It has been prepared from diffusion MRI datasets of the Human...

    Tags: Computational Neuroscience, Neuroscience, Neuroinformatics, Bioinformatics, Bioinformatics Software, Free Bioinformatics Software
  • BLAT by Jim Kent,UCSC

    BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the...

    Tags: Bioinformatics Software, Laboratory Software
  • Biskit by Raik Grünberg, Johan Leckner, and others

    Biskit is an open source software package written in Python. The package facilitates research in Structural bioinformatics and molecular modelling. Biskit falls into two parts: * an Object-oriented...

    Tags: Bioinformatics Software, Molecular Modelling, Physics Software, Computational Chemistry Software, Free Science Software, Free Software Programmed In Python, Molecular Dynamics
  • BioPHP

    BioPHP is a collection of open source PHP code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other bioinformatics tools. BioRuby is released under the GNU GPL...

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • BioRuby

    BioRuby is a collection of Open Source Ruby code, comprising classes for computation molecular biology and bioinformatics. It contains classes for DNA and protein sequence analysis, sequence...

    Latest version of BioRuby is 1.5.0 and it was released on 2015-07-01.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • BioMart

    BioMart is a community-driven project to provide a single point of access to distributed research data. The BioMart project contributes open source software and data services to the international...

    Tags: Bioinformatics Software, Free Software Projects, Biological Databases, Data Warehousing Products
  • BioNumerics by Applied Maths N.V.

    BioNumerics is a suite of bioinformatics software applications developed by the company Applied Maths...

    Tags: Bioinformatics Software
  • Bioinformatic Harvester by Urban Liebel, Björn Kindler

    The Bioinformatic Harvester was a bioinformatic meta search engine created by the European Molecular Biology Laboratory and subsequently hosted and further developed by KIT Karlsruhe Institute of...

    Latest version of Bioinformatic Harvester is 4 and it was released on 2011-05-24.

    Tags: Bioinformatics Software, Biological Databases, Internet Search Engines, Biology Websites
  • Beacon Designer by Premier Biosoft

    Beacon Designer designs highly specific and efficient primers and probes for real time PCR (polymerase chain reaction) assays. It is compatible to work on Windows as well as on Mac. The software...

    Latest version of Beacon Designer is 7.9 and it was released on [wiki=58c032d8e88b253d5577448141ed2384]17 June 2010[/wiki].

    Tags: Bioinformatics Software
  • Archaeopteryx by Christian M. Zmasek

    Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees. This type of program can be used for a variety of analyses of...

    Latest version of Archaeopteryx is 0.972+ beta 9M and it was released on 2012.08.08.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • AMPHORA by Martin Wu, Jonathan Eisen et al.

    AMPHORA ("AutoMated Phylogenomic infeRence Application") is an open-source bioinformatics workflow. AMPHORA2 uses 31 bacterial and 104 archaeal phylogenetic marker genes for inferring phylogenetic...

    Latest version of AMPHORA is 2.0 and it was released on 2013.

    Tags: Metagenomics Software, Bioinformatics Software, Free Bioinformatics Software, Computational Phylogenetics, Free Science Software
  • Abalone by Agile Molecule

    Abalone is a general purpose molecular dynamics and molecular graphics program for simulations of bio-molecules in a periodic boundary conditions in explicit (flexible SPC water model) or in...

    Latest version of Abalone is 1.9.0 and it was released on 2016-05-17.

    Tags: Science Software, Molecular Modelling Software, Molecular Dynamics Software, Monte Carlo Software, Bioinformatics Software, Computational Chemistry Software
  • AMAP by Ariel Schwartz (UC Berkeley), Lior Pachter (UC Berkeley)

    AMAP is a multiple sequence alignment program based on a new approach to multiple alignment called sequence annealing. This approach consists of building up the multiple alignment one match at a...

    Tags: Bioinformatics Software
  • AlleleID by PREMIER Biosoft

    AlleleID designs oligos for strain differentiation and taxa specific assays. This aids in bacterial identification, pathogen detection and species identification. The software is designed to run on...

    Latest version of AlleleID is 7.80 and it was released on 29 June 2013.

    Tags: Bioinformatics Software
  • Stemloc by Ian Holmes (UC Berkeley)

    Stemloc is a program for pairwise RNA structural alignment based on probabilistic models of RNA structure known as Pair stochastic context-free grammars. Stemloc implements constrained versions of...

    Tags: Bioinformatics Software
  • SplitsTree by Daniel Huson and David Bryant

    SplitsTree is a popular program for inferring phylogenetic trees or, more generally, phylogenetic networks from various types of data such as a sequence alignment, a distance matrix or a set of...

    Latest version of SplitsTree is 4.14.4 and it was released on 2008.

    Tags: Bioinformatics Software, Computational Phylogenetics, Genetics, Molecular Biology
  • RAPTOR by Bioinformatics Solutions Inc.

    RAPTOR is protein threading software used for protein structure prediction. It has been replaced by RaptorX, which is much more accurate than...

    Latest version of RAPTOR is 4.2 and it was released on {{Start date and age|2008|11}}.

    Tags: Bioinformatics Software, Molecular Modelling Software
  • NoeClone by NoeGen Inc.

    NoeClone is a bioinformatics software which can run in multiple operating systems (Windows, Mac OS, Unix/Linux) with the same...

    Latest version of NoeClone is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • MAFFT by Kazutaka Katoh

    In bioinformatics, MAFFT is a multiple sequence alignment program for amino acid or nucleotide sequences. The software is named after the acronym Multiple Alignment using Fast Fourier Transform...

    Latest version of MAFFT is 7.299 and it was released on 2016-06-28.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Handel by Ian Holmes (UC Berkeley)

    Handel is a suite of programs for multiple sequence alignment. Since it is based on a model of DNA sequence evolution that explicitly incorporates insertion and deletion events, it effectively...

    Tags: Bioinformatics Software
  • Giant Virus Finder by Csaba Kerepesi

    The Giant Virus Finder is a free bioinformatics software for finding giant viruses in...

    Tags: Metagenomics Software, Bioinformatics Software, Free Bioinformatics Software, Free Science Software
  • GENSCAN by Christopher Burge

    In bioinformatics GENSCAN is a program to identify complete gene structures in genomic DNA. It is a GHMM-based program that can be used to predict the location of genes and their exon-intron...

    Tags: Bioinformatics Software
  • Dendroscope by Daniel Huson et al.

    Dendroscope is an interactive computer software program written in Java for viewing Phylogenetic trees. This program is designed to view trees of all sizes and is very useful for creating figures....

    Latest version of Dendroscope is 3.2.10 and it was released on 2013.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Apache Taverna by Apache Software Foundation (myGrid for 2.x)

    Apache Taverna is an open source software tool for designing and executing workflows, initially created by the myGrid project under the name Taverna Workbench, now a project under the Apache...

    Latest version of Apache Taverna is 2.5 and it was released on 2014-04-16.

    Tags: Workflow Technology, Bioinformatics Software, School Of Computer Science University Of Manchester, Workflow Software, Apache Software Foundation, Apache Software Foundation Projects, Software Using The Apache License
  • BLAST by Altschul SF,Gish W,Miller W,Myers EW,Lipman DJ,NCBI

    In bioinformatics, BLAST for Basic Local Alignment Search Tool is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of proteins or the nucleotides...

    Latest version of BLAST is 2.6.0+ and it was released on 2016-12-07.

    Tags: Bioinformatics Algorithms, Computational Phylogenetics, Bioinformatics Software, Laboratory Software, Publicdomain Software
  • HMMER by Sean Eddy, Travis Wheeler, HMMER development team

    HMMER is a free and commonly used software package for sequence analysis written by Sean Eddy. Its general usage is to identify homologous protein or nucleotide sequences, and to perform sequence...

    Latest version of HMMER is 3.0 and it was released on 2010-03-28.

    Tags: Bioinformatics Software, Free Science Software, Free Software Programmed In C, Computational Science
  • MorphoBank by The MorphoBank Project

    MorphoBank is a web application for collaborative evolutionary research, specifically phylogenetic systematics or cladistics, on the phenotype. Historically, scientists conducting research on...

    Tags: Web Applications, Bioinformatics Software
  • OpenMS

    OpenMS is an open-source project for data analysis and processing in protein mass spectrometry and is released under the 3-clause BSD licence. It supports most common operating systems including...

    Latest version of OpenMS is 2.1.0 and it was released on 2016-11-22.

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Software Using The Bsd License
  • UGENE by Unipro

    UGENE is computer software for bioinformatics. It works on desktop computer operating systems such as Windows, macOS, or Linux. It is released as free and open-source software, under a GNU General...

    Latest version of UGENE is 1.27 and it was released on 2017-08-23.

    Tags: Bioinformatics Software, Free Science Software, Free Software Programmed In C, Computational Science
  • Molekel by Swiss National Supercomputing Centre

    Molekel is a free software multiplatform molecular visualization program. It was originally developed at the University of Geneva by Peter F. Flükiger in the 1990s for Silicon Graphics Computers. In...

    Latest version of Molekel is 5.4 and it was released on {{Start date and age|2009|08}}.

    Tags: Chemistry Software For Linux, Free Chemistry Software, Molecular Modelling Software, Science Software That Uses Qt
  • PyMOL by Schrödinger, Inc.

    PyMOL is computer software, a molecular visualization system created by Warren Lyford DeLano. It is user-sponsored, open-source software, released under the Python License. It was commercialized...

    Latest version of PyMOL is 1.8.6.2 and it was released on 2017-06-26.

    Tags: Articles Containing Video Clips, Chemistry Software For Linux, Free Chemistry Software, Molecular Modelling Software, Software That Uses Tk
  • Open Babel by Open Babel development team

    Open Babel is computer software, a chemical expert system mainly used to interconvert chemical file formats. Due to the strong relationship to informatics this program belongs more to the category...

    Latest version of Open Babel is 2.4.0 and it was released on 2016-09-25.

    Tags: Computational Chemistry Software, Free Chemistry Software, Free Software Programmed In C, Chemistry Software For Linux, Software That Uses Wxwidgets
  • MOE by Chemical Computing Group

    Molecular Operating Environment (MOE) is a drug discovery software platform that integrates visualization, modeling and simulations, as well as methodology development, in one package. MOE...

    Tags: Molecular Modelling Software, Chemistry Software For Linux, Computational Chemistry Software
  • Molden

    Molden is a general molecular and electronic structure processing...

    Latest version of Molden is 5.0.6 and it was released on 2013-04-09.

    Tags: Molecular Modelling Software, Computational Chemistry Software, Chemistry Software For Linux
  • Gabedit by A.R. ALLOUCHE

    Gabedit is a Graphical User Interface to GAMESS (US), Gaussian, MOLCAS, MOLPRO, MPQC, OpenMopac, PC GAMESS, Orca and Q-Chem computational chemistry...

    Latest version of Gabedit is 2.4.8 and it was released on 2014-02-07.

    Tags: Computational Chemistry Software, Scientific Software That Uses Gtk, Free Chemistry Software, Chemistry Software For Linux
  • CP2K

    CP2K is a freely available (GPL) program, written in Fortran 2003, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general...

    Latest version of CP2K is 4.1 and it was released on 2016-10-05.

    Tags: Free Physics Software, Free Software Programmed In Fortran, Density Functional Theory Software, Computational Chemistry Software, Free Chemistry Software, Chemistry Software For Linux
  • Avogadro

    Avogadro is a molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It is extensible...

    Latest version of Avogadro is Avogadro 1.2 and it was released on 2016-06-15.

    Tags: Free Chemistry Software, Free Software Programmed In C, Molecular Modelling Software, Computational Chemistry Software, Science Software That Uses Qt, Chemistry Software For Linux
  • JChemPaint by The CDK Project

    JChemPaint is computer software, an molecule editor and file viewer for chemical structures using 2D computer graphics. It is free and open-source software, released under a GNU Lesser General...

    Tags: Chemistry Software, Free Chemistry Software, Chemistry Software For Linux, Free Educational Software
  • BKChem by Beda Kosata

    BKChem is a free 2D molecule editor written in Python by Beda Kosata. As such, it is largely platform-independent. It uses Tk via...

    Latest version of BKChem is 0.13.0 and it was released on 2009-02-23.

    Tags: Free Software Programmed In Python, Chemistry Software, Free Chemistry Software, Software That Uses Tk, Chemistry Software For Linux
  • XDrawChem

    XDrawChem is a free software program for drawing chemical structural formulas, available for Unix and macOS. It is distributed under the GNU GPL. In Microsoft Windows this program is called...

    Latest version of XDrawChem is 1.9.9 and it was released on 2005-11-30.

    Tags: Chemistry Software, Free Science Software, Free Software Programmed In C, Free Software Programmed In Fortran, Science Software That Uses Qt, Chemistry Software For Linux
  • NWChem by Pacific Northwest National Laboratory

    NWChem is an ab initio computational chemistry software package which also includes quantum chemical and molecular dynamics functionality. It was designed to run on high-performance parallel...

    Latest version of NWChem is 6.6 and it was released on October 20, 2015.

    Tags: Computational Chemistry Software, Free Chemistry Software, Chemistry Software For Linux
  • PSI4 by The PSI4 Project

    PSI is an ab initio computational chemistry package originally written by the research group of Henry F. Schaefer, III (University of Georgia). Utilizing PSI, one can perform a calculation on a...

    Latest version of PSI4 is PSI4 1.1 and it was released on 2017-05-19.

    Tags: Computational Chemistry Software, Free Chemistry Software, Chemistry Software For Linux
  • Ghemical

    Ghemical is a computational chemistry software package written in C++ and released under the GNU General Public License. The program has graphical user interface based on GTK+2 and supports quantum...

    Tags: Computational Chemistry Software, Free Software Programmed In C, Free Chemistry Software, Free Educational Software, Science Software That Uses Gtk
  • FreeMind by Jörg Müller, Daniel Polansky, Petr Novak, Christian Foltin, Dimitri Polivaev, et al.

    FreeMind is a ] mind mapping application written in Java. FreeMind is licensed under the GNU General Public License Version 2. It provides extensive export capabilities. It runs on Microsoft...

    Latest version of FreeMind is FreeMind 1.0.1 and it was released on 2014-09-12.

    Tags: Concept And Mindmapping Software Programmed In Java, Free Notetaking Software, Free Software Programmed In Java
  • BaseX

    BaseX is a native and light-weight XML database management system and XQuery processor, developed as a community project on GitHub. It is specialized in storing, querying, and visualizing large XML...

    Latest version of BaseX is 8.6.7 and it was released on 2017-09-21.

    Tags: Xml, Free Database Management Systems, Xml Databases, Xquery Processors, Free Software Programmed In Java, Databaserelated Software For Linux
  • Freeplane by Dimitry Polivaev, et al.

    Freeplane is a free, open source software application for creating mind maps (diagrams of connections between ideas), and electronic outlines. Written in Java, Freeplane is supported on Windows, Mac...

    Tags: Concept And Mindmapping Software Programmed In Java, Notetaking Software, Free Notetaking Software, Free Software Programmed In Java, Software Forks
  • Open Language Tools by Sun Microsystems

    Open Language Tools is a Java project released by Sun Microsystems under the terms of Sun’s CDDL (a GPL-incompatible free software license). Open Language Tools are intended for people who are...

    Latest version of Open Language Tools is 1.3.1 and it was released on 2010-03-15.

    Tags: Softwarelocalization Tools, Free Software Programmed In Java, Computerassisted Translation Software Programmed In Java
  • DHIS by Health Information Systems Programme

    The District Health Information Software (DHIS) is used in more than 40 countries around the world. DHIS is an open source software platform for reporting, analysis and dissemination of data for all...

    Tags: Free Software Programmed In Java, Free Healthcare Software
  • OpenNMS by The Order of the Green Polo,The OpenNMS Group

    OpenNMS is a free and open-source enterprise grade network monitoring and network management platform. It is developed and supported by a community of users and developers as well as by the The...

    Latest version of OpenNMS is 20.0.2 and it was released on 2017-08-17.

    Tags: Network Management, System Administration, Computer Network Analysis, Network Performance, Free Network Management Software, Free Software Programmed In Java, Java Platform Software, Software Using The Gnu Agpl License
  • oVirt by oVirt Project

    oVirt is free, open-source virtualization management platform. It was founded by Red Hat as a community project on which Red Hat Enterprise Virtualization is based. It allows centralized management...

    Latest version of oVirt is 4.1.6 and it was released on 2017-09-18.

    Tags: Free Software For Cloud Computing, Free Software Programmed In Java, Red Hat Software, Virtualizationrelated Software For Linux
  • openQRM by openQRM Community / openQRM Enterprise

    openQRM is a free and open-source cloud computing management platform for managing heterogeneous data center infrastructures. The openQRM platform manages a data center's infrastructure to build...

    Latest version of openQRM is [http://sourceforge.net/projects/openqrm] and it was released on 2013-09-02.

    Tags: Cloud Infrastructure, Free Software Programmed In Java, Free Software Programmed In C, Free Software Programmed In Php, Free Software For Cloud Computing, Virtualizationrelated Software For Linux
  • OpenNebula by OpenNebula Community

    OpenNebula is a cloud computing platform for managing heterogeneous distributed data center infrastructures. The OpenNebula platform manages a data center's virtual infrastructure to build private,...

    Latest version of OpenNebula is 5.4.0 and it was released on 2017-07-20.

    Tags: Cloud Infrastructure, Free Software Programmed In Java, Free Software Programmed In Ruby, Free Software Programmed In C, Free Software Programmed In C, Free Software For Cloud Computing, Virtualizationrelated Software For Linux
  • Eucalyptus Systems Inc by Eucalyptus Systems, Inc.

    Eucalyptus is paid and open-source computer software for building Amazon Web Services (AWS)-compatible private and hybrid cloud computing environments, originally developed by the company Eucalyptus...

    Tags: Cloud Infrastructure, Free Software Programmed In C, Free Software Programmed In Java, Cloud Platforms, Free Software For Cloud Computing, Virtualizationrelated Software For Linux
  • CloudStack by Apache Software Foundation

    CloudStack is an open source cloud computing software for creating, managing, and deploying infrastructure cloud services. It uses existing hypervisors such as KVM, VMware ESXi and XenServer/XCP for...

    Latest version of CloudStack is 4.9.2.0 and it was released on 2017-01-03.

    Tags: Cloud Platforms, Cloud Infrastructure, Free Software Programmed In Java, Virtualizationrelated Software For Linux, Free Software For Cloud Computing
  • PJIRC by Philippe 'Plouf' Detournay

    Plouf's Java IRC (PJIRC) is a web-based open source IRC client that is written in Java. Any web browser that supports the Java Runtime Environment, or an alternative Java interpreter, can use the...

    Tags: Internet Relay Chat Clients, Free Internet Relay Chat Clients, Instant Messaging Clients Programmed In Java, Crossplatform Free Software, Free Software Programmed In Java
  • FreeTTS

    FreeTTS is an open source speech synthesis system written entirely in the Java programming language. It is based upon Flite. FreeTTS is an implementation of Sun's Java Speech API. FreeTTS supports...

    Latest version of FreeTTS is 1.2.2 and it was released on 2009-03-09.

    Tags: Free Software Programmed In Java, Free Speech Synthesis Software
  • LWJGL

    The Lightweight Java Game Library (LWJGL) is an open-source Java software library for video game developers. It exposes high performance cross-platform libraries commonly used in developing video...

    Latest version of LWJGL is 3.1.2 and it was released on 2017-05-15.

    Tags: Crossplatform Free Software, Free Computer Libraries, Free Game Engines, Free Software Programmed In Java, Graphics Libraries, Java Apis, Java Libraries, Video Game Development Software
  • Eclipse Che by Eclipse Foundation

    Eclipse Che is an open-source Java based developer workspace server and cloud integrated development environment (IDE) which provides a remote development platform for multi-user purpose. The...

    Tags: Eclipse, Code Navigation Tools, Crossplatform Free Software, Debuggers, Formerly Proprietary Software, Free Html Editors, Free Integrated Development Environments, Free Software Programmed In Java, Free Uml Tools, Ibm Software, Integrated Development Environments, Java Development Tools, Java Platform, Linux Integrated Development Environments, Linux Programming Tools, Linux Software, Macos Programming Tools, Programming Tools For Windows, Macos Text Editors, Software Development Kits, Software Using The Eclipse License
  • BlueJ by BlueJ Team

    BlueJ is an integrated development environment (IDE) for the Java programming language, developed mainly for educational purposes, but also suitable for small-scale software development. It runs...

    Latest version of BlueJ is 4.1.1 and it was released on 2017-09-18.

    Tags: Integrated Development Environments, Free Integrated Development Environments, Crossplatform Free Software, Free Software Programmed In Java, Java Development Tools, Java Platform, Linux Programming Tools, Software Development Kits, Macos Programming Tools, Programming Tools For Windows, Linux Software, Educational Programming Languages, Pedagogic Integrated Development Environments
  • Apache Struts by Apache Software Foundation

    Apache Struts 1 is an open-source web application framework for developing Java EE web applications. It uses and extends the Java Servlet API to encourage developers to adopt a model-view-controller...

    Latest version of Apache Struts is 1.3.10 and it was released on 2008-12-08.

    Tags: Apache Software Foundation, Crossplatform Free Software, Free Software Programmed In Java, Java Enterprise Platform, Web Frameworks, Software Using The Apache License
  • Nimbus by Kate Keahey, Tim Freeman, et al.

    Nimbus is a toolkit that, once installed on a cluster, provides an infrastructure as a service cloud to its client via WSRF-based or Amazon EC2 WSDL web service APIs. Nimbus is free and open-source...

    Tags: Cloud Infrastructure, Free Software For Cloud Computing, Free Software Programmed In Java, Free Software Programmed In Python, Virtualizationrelated Software For Linux
  • LingCloud by Institute of Computing Technology,Chinese Academy of Sciences

    LingCloud is a suite of open-source cloud computing system software developed by Institute of Computing Technology, Chinese Academy of Sciences. It is licensed under Apache License 2.0. LingCloud...

    Latest version of LingCloud is 0.9 and it was released on 2011-08-31.

    Tags: Cloud Infrastructure, Free Software Programmed In Java, Free Software For Cloud Computing
  • WSO2 Mashup Server by WSO2 and Community

    The WSO2 Mashup Server is an open source mashup platform that hosts JavaScript based mashups. It is based on Apache Axis2 and other open source projects, and provides JavaScript authors the ability...

    Latest version of WSO2 Mashup Server is 2.0.2 and it was released on 2010-05-13.

    Tags: Free Software Programmed In Java, Crossplatform Free Software, Web Scraping
  • Spring Web Flow

    Spring Web Flow (SWF) is the sub-project of the Spring Framework that focuses on providing the infrastructure for building and running rich web applications. The project tries to solve 3 core...

    Latest version of Spring Web Flow is 2.4.4 and it was released on 2016-07-20.

    Tags: Crossplatform Free Software, Free Software Programmed In Java
  • LanguageTool by and

    LanguageTool is a free and open-source, cross-platform spell and grammar checker which can be used as an extension in LibreOffice/OpenOffice, Vim, Emacs, Firefox and Thunderbird, or as a stand-alone...

    Tags: Crossplatform Free Software, Software Using The Lgpl License, Firefox Addons, Free Software Programmed In Java, Grammar Checkers, Free Spelling Checking Programs
  • SNAMP by Bytex Solutions OÜ

    SNAMP is an open-source, cross-platform software platform for telemetry, tracing and elasticity management of distributed...

    Latest version of SNAMP is 2.0.0 and it was released on 2017-07-24.

    Tags: Free Software Projects, Crossplatform Free Software, Free Software Programmed In Java, Free Network Management Software, Free Software For Cloud Computing, Software Using The Apache License
  • Apache Struts 2 by Apache Software Foundation

    Apache Struts 2 is an open-source web application framework for developing Java EE web applications. It uses and extends the Java Servlet API to encourage developers to adopt a model-view-controller...

    Latest version of Apache Struts 2 is 2.5.13 and it was released on 2017-09-05.

    Tags: Apache Software Foundation, Crossplatform Free Software, Free Software Programmed In Java, Java Enterprise Platform, Web Frameworks, Software Using The Apache License
  • KNIME The Open Analytics Platform by KNIME.com AG

    KNIME , the Konstanz Information Miner, is an open source data analytics, reporting and integration platform. KNIME integrates various components for machine learning and data mining through its...

    Latest version of KNIME - The Open Analytics Platform is 3.4.1 and it was released on Sept. 7, 2017.

    Tags: Free Software Programmed In Java, Free Software Projects, Free Bioinformatics Software, Data Mining And Machine Learning Software, Image Processing Software
  • MALLET by Andrew McCallum, with contributions from several graduate students and staff

    MALLET is a Java "MAchine Learning for LanguagE...

    Latest version of MALLET is 2.0.7 and it was released on 2011-09-22.

    Tags: Free Artificial Intelligence Applications, Natural Language Processing Toolkits, Free Software Programmed In Java, Java Libraries, Data Mining And Machine Learning Software
  • Apache Flume

    Apache Flume is a distributed, reliable, and available service for efficiently collecting, aggregating, and moving large amounts of log data. It has a simple and flexible architecture based on...

    Latest version of Apache Flume is 1.7.0 and it was released on 2016-10-17.

    Tags: Data Mining And Machine Learning Software, Apache Software Foundation Projects, Free Software Programmed In Java, System Administration
  • Zekr by Mohsen Saboorian et al.

    Zekr (Arabic:ذکر) is an open source Quranic desktop application. It is an open platform Quran study tool for browsing and researching on the Quran. Zekr is a Quran-based project, planned to be a...

    Tags: Quran Software, Free Software Programmed In Java, Unix Software, Windows Textrelated Software, Macos Textrelated Software, Macos Software, Java Platform Software
  • JQuranTree by Kais Dukes

    JQuranTree is a set of Java APIs for accessing and analyzing the Quran, in its authentic Arabic form. The Java library is released as an open source project. The Uthmani distribution of the Tanzil...

    Tags: Quran Software, Free Software Programmed In Java
  • dcti by Tony Morris

    Reductio is open source software written using the Java Programming Language from an idea that originated in a research paper called QuickCheck: A Lightweight Tool for Random Testing of Haskell...

    Tags: Software Testing Tools, Free Software Programmed In Java, Free Software Testing Tools
  • OmegaT by Didier Briel, Alex Buloichik, Zoltan Bartko, Tiago Saboga, etc...

    OmegaT is a computer-assisted translation tool written in the Java programming language. It is free software originally developed by Keith Godfrey in 2000, and is currently developed by a team led...

    Tags: Translation Software, Free Software Programmed In Java, Softwarelocalization Tools, Computerassisted Translation Software Programmed In Java
  • openTMS by Klemens Waldhör, Rainer Kemmler

    openTMS is an Acronym for "Open Source Translation Management...

    Latest version of openTMS is 0.9.1 and it was released on 2009-07-09.

    Tags: Free Software Programmed In Java, Translation Software
  • GlobalSight

    GlobalSight is a free and open source translation management system (TMS) released under the Apache License 2.0. As of version 7.1 it supports the TMX and SRX 2.0 Localization Industry Standards...

    Latest version of GlobalSight is 8.1.1 and it was released on 2011-06-09.

    Tags: Translation Software, Free Software Programmed In Java, Computerassisted Translation Software Programmed In Java, Formerly Proprietary Software, Translation Companies, Free Software Projects, Companies Established In 1997, Computerassisted Translation
  • WildFly by Red Hat

    WildFly, formerly known as JBoss AS, or simply JBoss, is an application server authored by JBoss, now developed by Red Hat. WildFly is written in Java, and implements the Java Platform, Enterprise...

    Latest version of WildFly is 10.1 and it was released on 2016-08-19.

    Tags: Crossplatform Software, Free Software Programmed In Java, Java Enterprise Platform, Portal Software, Red Hat Software, Web Server Software Programmed In Java
  • Apache Ant by Apache Software Foundation

    Apache Ant is a software tool for automating software build processes, which originated from the Apache Tomcat project in early 2000. It was a replacement for the Unix make build tool, and was...

    Latest version of Apache Ant (Another Neat Tool) is 1.10.1 and it was released on 2017-02-06.

    Tags: Apache Software Foundation, Build Automation, Compiling Tools, Crossplatform Free Software, Free Software Programmed In Java, Java Libraries, Java Development Tools, Software Using The Apache License, Xml Software
  • DSpace by DuraSpace

    DSpace is an open source repository software package typically used for creating open access repositories for scholarly and/or published digital content. While DSpace shares some feature overlap...

    Latest version of DSpace is 6.0 and it was released on 2016-10-24.

    Tags: 2002 Software, Digital Library Software, Free Institutional Repository Software, Free Software Programmed In Java, Massachusetts Institute Of Technology Software, Openaccess Archives
  • NewGenLib by Verus Solutions

    NewGenLib is an integrated library management system developed by Verus Solutions Pvt Ltd. Domain expertise is provided by Kesavan Institute of Information and Knowledge Management in Hyderabad,...

    Latest version of NewGenLib is 3.1.1 and it was released on 2015-04-16.

    Tags: Library Cataloging And Classification, Free Software Programmed In Java, Free Library And Information Science Software
  • INGENIAS by Jorge J.J. Gomez-Sanz, Rubén Fuentes, Juan Pavón

    INGENIAS (Engineering for Software Agents) is an open-source software framework for the analysis, design and implementation of multi-agent systems...

    Latest version of INGENIAS is 1.5-SNAPSHOT.143 and it was released on 2012-11-09.

    Tags: Free Software, Free Software Programmed In Java, 2002 Software, Crossplatform Free Software, Agentbased Software, Data Modeling Tools
  • Dasher by The Dasher Project

    Dasher is an input method and computer accessibility tool which enables users to compose text without using a keyboard, by entering text on a screen with a pointing device such as a mouse, touch...

    Latest version of Dasher is 4.11 and it was released on 2010-03-14.

    Tags: User Interfaces, User Interface Techniques, Pointingdevice Text Input, Disability Software, Free Software Programmed In C, Free Software Programmed In C, Free Software Programmed In Java, Gnome Accessibility, Crossplatform Free Software
  • TopBT by The Ohio State University

    TopBT (originally called Top-BT), is a topology-aware BitTorrent client implemented with open-source Vuze code base Version 4.0.0.4. It is developed as a research result from The Ohio State...

    Tags: Free Bittorrent Clients, Free Software Programmed In Java, Bittorrent Clients For Linux, Windows File Sharing Software, Java Platform Software
  • OneSwarm by University of Washington

    OneSwarm is a privacy-preserving P2P client developed at the University of Washington. Although backward compatible with traditional BitTorrent clients, OneSwarm also includes new features designed...

    Tags: Free Bittorrent Clients, Free Software Programmed In Java, Java Platform Software, Bittorrent Clients For Linux, Macos File Sharing Software, Windows File Sharing Software, Anonymous File Sharing Networks
  • BitTyrant by University of Washington,University of Massachusetts Amherst

    BitTyrant is a BitTorrent client modified from the Java-based Azureus 2.5 code base. BitTyrant is designed to give preference to clients uploading to it fastest and limiting slower uploaders. It is...

    Tags: Free Bittorrent Clients, Free Software Programmed In Java, Bittorrent Clients For Linux, Macos File Sharing Software, Windows File Sharing Software
  • Red5

    Red5 is a free software media streaming server implemented in Java, which provides services similar to those offered by the proprietary Adobe Flash Media Server and Wowza Streaming Engine...

    Tags: Free Software Programmed In Java, Media Servers, Streaming Software
  • VisualVM by Oracle Corporation

    VisualVM is a tool that provides a visual interface for viewing detailed information about Java applications while they are running on a Java Virtual Machine (JVM). VisualVM organizes JVM data that...

    Latest version of VisualVM is 1.3.9 and it was released on 2016-10-04.

    Tags: Oracle Software, Debuggers, Profilers, Free Software Programmed In Java
  • Neuroph

    Neuroph is an object-oriented neural network framework written in Java. It can be used to create and train neural networks in Java programs. Neuroph provides Java class library as well as GUI tool...

    Latest version of Neuroph is 2.92 and it was released on 2015-09-22.

    Tags: Neural Network Software, Free Software Programmed In Java
  • Java Object Oriented Neural Engine by The Joone Team

    :For the pornographic film director, see Joone (Director) JOONE (Java Object Oriented Neural Engine) is a component based neural network framework built in...

    Latest version of Java Object Oriented Neural Engine is 1.2.1 and it was released on 2005-09-08.

    Tags: Neural Network Software, Free Software Programmed In Java
  • UltraVNC by Rudi De Vos, UltraSam, Martin Scharpf, Oliver Schneider

    UltraVNC (sometimes written uVNC), an open-sourceremote-administration/remote-desktop-software utility for Microsoft Windows, uses the VNC protocol to control/access another computer remotely over a...

    Latest version of UltraVNC is 1.2.1.2 and it was released on 2016-09-19.

    Tags: Windowsonly Free Software, Remote Administration Software, Virtual Network Computing, Portable Software, Free Software Programmed In C, Free Software Programmed In C, Free Software Programmed In Java
  • TigerVNC

    TigerVNC is VNC server and client software, started as a fork of TightVNC in 2009. Red Hat, Cendio AB, and TurboVNC maintainers started this fork because RealVNC had focused on their enterprise...

    Latest version of TigerVNC is 1.8.0 and it was released on 2017-05-17.

    Tags: Crossplatform Free Software, Free Software Programmed In C, Free Software Programmed In C, Free Software Programmed In Java, Linux Remote Administration Software, Macos Remote Administration Software, Remote Administration Software, Virtual Network Computing, Windows Remote Administration Software
  • Easy JavaScript Simulations Old name Easy Java Simulations

    Old name ""EJS"" Easy Java Simulations or new name since 2014 EJSS, or Easy JavaScript Simulations, is an open-source software tool, part of the Open Source Physics project, designed for the...

    Tags: Simulation Software, Plotting Software, Crossplatform Software, Free Software Programmed In Java
  • MyCoRe by MyCoRe Team

    MyCoRe (acronym for My Content Repository) is an open source repository software framework for building disciplinary or institutional repositories, digital archives, digital libraries, and...

    Latest version of MyCoRe is 2017.06.0 (LTS) and it was released on 20. June 2017.

    Tags: 2001 Software, Digital Library Software, Institutional Repository Software, Free Institutional Repository Software, Free Library And Information Science Software, Free Software Programmed In Java, Openaccess Archives
  • Openfire by Ignite Realtime

    Openfire (previously known as Wildfire, and Jive Messenger) is an instant messaging (IM) and groupchat server that uses XMPP server written in Java and licensed under the Apache License...

    Latest version of Openfire is 4.1.3 and it was released on 2017-02-24.

    Tags: Java Platform Software, Instant Messaging Server Software, Free Software Programmed In Java
  • NetBeans IDE by Sun Microsystems (now owned by Oracle Corporation)

    NetBeans is a software development platform written in Java. The NetBeans Platform allows applications to be developed from a set of modular software components called modules. Applications based on...

    Latest version of NetBeans IDE is 8.2 and it was released on 2016-10-03.

    Tags: 2000 Software, Android Development Software, Code Navigation Tools, Crossplatform Free Software, Formerly Proprietary Software, Free Computer Programming Tools, Free Html Editors, Free Integrated Development Environments, Free Software Programmed In Java, Free Uml Tools, Free Web Software, Integrated Development Environments, Java Development Tools, Java Platform, Linux Integrated Development Environments, Linux Programming Tools, Macos Programming Tools, Macos Text Editors, Programming Tools For Windows, Software Development Kits, Software Using The Cddl License, Sun Microsystems Software, Web Development Software
  • Apache ObJectRelationalBridge by Apache Software Foundation

    Apache ObJectRelationalBridge (OJB) is an Object/Relational mapping tool that allows transparent persistence for Java Objects against relational databases. It was released on April 6, 2005. As of...

    Latest version of Apache ObJectRelationalBridge is 1.0.55 and it was released on 2005-12-31.

    Tags: Apache Software Foundation, Apache Software Foundation Projects, Java Enterprise Platform, Free Software Programmed In Java, Free Web Server Software, Crossplatform Free Software
  • Jetty by Eclipse Foundation

    Eclipse Jetty is a Java HTTP (Web) server and Java Servlet container. While Web Servers are usually associated with serving documents to people, Jetty is now often used for machine to machine...

    Latest version of Jetty is 9.4.6 and it was released on 2017-05-31.

    Tags: Free Software Programmed In Java, Free Web Server Software, Web Server Software Programmed In Java, Software Using The Apache License, Software Using The Eclipse License
  • Apache Tomcat by Apache Software Foundation

    Apache Tomcat, often referred to as Tomcat Server, is an open-source Java Servlet Container developed by the Apache Software Foundation (ASF). Tomcat implements several Java EE specifications...

    Tags: Apache Software Foundation, Java Enterprise Platform, Free Software Programmed In Java, Free Web Server Software, Crossplatform Free Software, Software Using The Apache License, Web Server Software Programmed In Java
  • OpenJDK by Oracle Corporation

    OpenJDK (Open Java Development Kit) is a free and open source implementation of the Java Platform, Standard Edition (Java SE). It is the result of an effort Sun Microsystems began in 2006. The...

    Tags: Free Software Programmed In C, Free Software Programmed In Java, Free Virtualization Software, Java, Java Libraries, Java Platform, Java Virtual Machine
  • Apache FOP by Apache Software Foundation

    Formatting Objects Processor (FOP, also known as Apache FOP) is a Java application that converts XSL Formatting Objects (XSL-FO) files to PDF or other printable formats. FOP was originally developed...

    Latest version of Apache FOP is 2.2 and it was released on 2017-04-10.

    Tags: Apache Software Foundation, Free System Software, Free Software Programmed In Java, Java Libraries
  • Apache Apex by Apache Software Foundation

    Apache Apex is a YARN-native platform that unifies stream and batch processing. It processes big data-in-motion in a way that is scalable, performant, fault-tolerant, stateful, secure, distributed,...

    Latest version of Apache Apex is {{URL| http://apex.apache.org/downloads.html | 3.5.0}} and it was released on 12 December 2016.

    Tags: Apache Software Foundation Projects, Free Software Programmed In Java, Apache Software Foundation, Software Using The Apache License, Free System Software, Distributed Stream Processing
  • CommaFeed

    CommaFeed is a free and open source feed reader. It is a web application which can be self hosted on a web server or used through commafeed.com. It has clean responsive design supporting desktop,...

    Tags: Free And Opensource Android Software, Free Software Programmed In Java, Crossplatform Free Software, News Aggregators
  • ADaMSoft by CASPUR statistical group

    ADaMSoft is a free and Open Source statistical software developed in Java and can run on any platform supporting...

    Latest version of ADaMSoft is 3.31.1 and it was released on 2015-04-27.

    Tags: Free Software Programmed In Java, Free Statistical Software
  • Apache Hadoop by Apache Software Foundation

    Apache Hadoop is an open-source software framework used for distributed storage and processing of dataset of big data using the MapReduce programming model. It consists of computer clusters built...

    Latest version of Apache Hadoop is 2.8.0 and it was released on 2017-03-22.

    Tags: Apache Software Foundation, Big Data Products, Cloud Infrastructure, Distributed File Systems, Free Software For Cloud Computing, Free Software Programmed In Java, Free System Software, Hadoop, Software Using The Apache License
  • JOnAS by OW2 Consortium

    JOnAS is an open-source implementation of the Java EE application server specification, developed and hosted by the ObjectWeb consortium (ObjectWeb is a non-profit European consortium, founded by...

    Latest version of JOnAS is 5.3.0 and it was released on 2013-10-04.

    Tags: Free Server Software, Free Software Programmed In Java, Ow2 Consortium, Java Enterprise Platform, Web Server Software Programmed In Java
  • DocFetcher by DocFetcher project

    DocFetcher is an open source desktop search application that runs on Microsoft Windows, Mac OS X and Linux. It is written in Java and has a Standard Widget Toolkit based graphical user...

    Latest version of DocFetcher is 1.1.19 and it was released on Jan, 10, 2017.

    Tags: Desktop Search Engines, Free Search Engine Software, Crossplatform Software, Java Platform Software, Free Software Programmed In Java
  • Fluentd by Treasure Data

    Fluentd is a cross platform open source data collection software project originally developed at Treasure Data. It is written primarily in the Ruby programming...

    Tags: Big Data Companies, Data Warehousing Products, Data Security, Computer Security Companies, Freeware, Free Software, System Administration, Data Mining And Machine Learning Software, Free Science Software, Free Software Programmed In Java, Free Data Analysis Software, Free Artificial Intelligence Applications
  • JasperReports by Jaspersoft

    JasperReports is an open source Java reporting tool that can write to a variety of targets, such as: screen, a printer, into PDF, HTML, Microsoft Excel, RTF, ODT, Comma-separated values or XML...

    Latest version of JasperReports is 6.4.1 and it was released on 2017-06-28.

    Tags: Java Platform Software, Reporting Software, Free Reporting Software, Free Software Programmed In Java, Business Intelligence
  • Projectnet by Integrated Computer Solutions

    Project.net is an open source, enterprise scale project management application for Microsoft Windows and Unix operating systems. Project.net is commercial open source. Support and training are...

    Latest version of Project.net is v9.3 and it was released on 2012-06-13.

    Tags: Free Software Programmed In Java, Free Project Management Software, Free Software Companies
  • OpenProj by Marc O'Brien, Howard Katz, Laurent Chrettieneau

    OpenProj is an open source project management software...

    Latest version of OpenProj is OpenProj 1.4 and it was released on 2008.

    Tags: Free Software Programmed In Java, Free Project Management Software, Java Platform Software
  • Solr by Apache Software Foundation

    Solr (pronounced "solar") is an open source enterprise search platform, written in Java, from the Apache Lucene project. Its major features include full-text search, hit highlighting, faceted...

    Latest version of Solr is 7.0.0 and it was released on 2017-09-20.

    Tags: Apache Software Foundation, Free Software Programmed In Java, Free Search Engine Software, Search Engine Software, Databaserelated Software For Linux, Nosql
  • TightVNC

    In computing, TightVNC is a cross-platform free and open-source remote desktop software application. Constantin Kaplinsky developed TightVNC, using and extending the RFB protocol of Virtual Network...

    Latest version of TightVNC is 2.8.8 and it was released on 2017-04-06.

    Tags: Remote Desktop, Virtual Network Computing, Remote Administration Software, Free Networkrelated Software, Free Software Programmed In C, Free Software Programmed In C, Free Software Programmed In Java, Crossplatform Software, Portable Software, Remote Desktop Software For Linux
  • Audiveris by Hervé Bitteur

    Audiveris is an open source tool for optical music recognition (OMR). It allows a user to import scanned music scores and export them to MusicXML format for use in other applications, e.g. music...

    Latest version of Audiveris is 4.3 and it was released on 2013-11-26.

    Tags: Music Ocr Software, Crossplatform Free Software, Free Software Programmed In Java, Free Music Software
  • Ehcache by Terracotta, Inc.

    Ehcache is a widely used open source Java distributed cache for general purpose caching, Java EE and . It features, listeners, cache exception handlers, a gzip caching servlet filter, RESTful and...

    Latest version of Ehcache is 3.3.0 and it was released on 2017-02-01.

    Tags: Cache, Free Memory Management Software, Free Software Programmed In Java, Crossplatform Free Software, Java Enterprise Platform
  • mXparser

    mXparser is an open-source mathematical expressions parser/evaluator providing abilities to calculate various expressions at a run time. Expressions definitions are given as plain text, then...

    Latest version of mXparser is 4.0.0 and it was released on 2017-03-27.

    Tags: Free Mathematics Software, Parsing, 2010 Software, Free Software Programmed In Java, Free Software Programmed In C Sharp, Software Using The Bsd License, Free Mobile Software, Software That Uses Mono, Free And Opensource Android Software, Net Framework Software, Computer Algebra Systems
  • Mobile Web Server by Apache Software Foundation, Nokia Research

    A Mobile Web Server is url= Server]] designed for modern-day smartphones to host personal web servers, through the use of open sourced software, such as, i-jetty, an open source software, based on...

    Latest version of Mobile Web Server is 1.5 and it was released on 2008-11-18.

    Tags: Nokia Services, Free Web Server Software, Free Software Programmed In C, Free Software Programmed In C, Free Software Programmed In Java, Mobile Software, S60, Symbian Software
  • Phex by Phex Development Team

    Phex is a peer-to-peer file sharing client for the gnutella network, released under the terms of the GNU General Public License, so Phex is free software. Phex is based on the Java platform and...

    Tags: File Sharing Software For Linux, Macos File Sharing Software, Windows File Sharing Software, Free Software Programmed In Java, Free File Sharing Software
  • FreeCast by Alban Peignier, Stéphane Lacoin and Timothée Peignier

    FreeCast is a free software application which allows peer-to-peer streaming, sometimes called peercasting. It makes possible an audio (Ogg Vorbis) or video (Ogg Theora) stream broadcast to a large...

    Tags: Free File Sharing Software, Digital Audio, Peercasting, Peertopeer Software, Free Software Programmed In Java
  • Cabos by heavy_baby

    Cabos was a free gnutella file sharing program. It was based on LimeWire's source code, and had a similar feel in terms of interface. However, it lacked the chat and library features found in...

    Tags: Free Software Programmed In Java, Free File Sharing Software, Gnutella Clients, Crossplatform Software, Classic Mac Os Software, Macos File Sharing Software, Windows File Sharing Software, 2004 Software
  • JPC

    JPC is an x86 emulator written in pure Java. It can run on any platform that supports the Java virtual machine. It creates a virtual PC compatible machine that can run MS-DOS and other x86 operating...

    Tags: X86 Emulators, Free Software Programmed In Java, Free Emulation Software
  • Freenet by The Freenet Project

    Freenet is a peer-to-peer platform for censorship-resistant communication. It uses a decentralized distributed data store to keep and deliver information, and has a suite of free software for...

    Tags: Free File Transfer Software, Free File Sharing Software, Distributed File Systems, Anonymous File Sharing Networks, Anonymity Networks, Distributed Data Storage Systems, Free Software Programmed In Java, Crossplatform Software, Beta Software
  • OpenCards by Holger Brandl

    OpenCards is a free spaced repetition flashcard program. The software is similar to SuperMemo, Anki or Mnemosyne. The flashcards are saved as PowerPoint presentation files and may include text,...

    Latest version of OpenCards is 2.5.1 and it was released on 2017-01-05.

    Tags: Spaced Repetition Software, Free Software Programmed In Java, Free Educational Software
  • Cascading

    Cascading is a software abstraction layer for Apache Hadoop and Apache Flink. Cascading is used to create and execute complex data processing workflows on a Hadoop cluster using any JVM-based...

    Tags: Free Software Programmed In Java, Free System Software, Cloud Infrastructure, Hadoop
  • Apache Flink by Apache Software Foundation

    Apache Flink is an open source stream processing framework developed by the Apache Software Foundation. The core of Apache Flink is a distributed streaming dataflow engine written in Java and Scala....

    Latest version of Apache Flink is {{URL|https://flink.apache.org/downloads.html#latest-stable-release-v132|1.3.2}} and it was released on 5 August 2017.

    Tags: Apache Software Foundation Projects, Free Software Programmed In Java, Apache Software Foundation, Software Using The Apache License, Free System Software, Distributed Stream Processing
  • JMulTi by The JMulTi Team

    JMulTi is an open-source interactive software for econometric analysis, specialised in univariate and multivariate time series analysis. It has a Java graphical user interface. The motivation for...

    Latest version of JMulTi is 4.23 and it was released on 2008-07-23.

    Tags: Free Econometrics Software, Time Series Software, Free Software Programmed In Java
  • VUE by Academic Technology group at Tufts University

    The Visual Understanding Environment or VUE is a free, open source concept mapping application written in Java. The application is developed by the Academic Technology group at Tufts University. VUE...

    Latest version of VUE is 3.3.0 and it was released on 2015-10-08.

    Tags: Concept And Mindmapping Software Programmed In Java, Free Diagramming Software, Free Software Programmed In Java
  • Apache Hive

    Apache Hive is a data warehouse software project built on top of Apache Hadoop for providing data summarization, query, and analysis. Hive gives an SQL-like interface to query data stored in various...

    Latest version of Apache Hive is 2.3.0 and it was released on 2017-07-19.

    Tags: 2015 Software, Apache Software Foundation, Apache Software Foundation Projects, Cloud Computing, Facebook Software, Free Software Programmed In Java, Free System Software, Hadoop, Software Using The Apache License
  • Renjin by Alexander Bertram

    Renjin is an implementation of the R programming language atop the Java Virtual Machine. It is free software released under the GPL. Renjin is tightly integrated with Java to allow the embedding of...

    Latest version of Renjin is 0.8 and it was released on 2015-11-13.

    Tags: Free Software Programmed In Java, Jvm Programming Languages, Scripting Languages, R, Crossplatform Free Software, Array Programming Languages, Dynamically Typed Programming Languages, Functional Languages, Datacentric Programming Languages, Free Statistical Software, Literate Programming, Numerical Analysis Software For Linux, Numerical Analysis Software For Macos, Numerical Analysis Software For Windows, Data Mining And Machine Learning Software, Free Data Visualization Software
  • Archimedes The Open CAD by Archimedes Project, University of São Paulo

    Archimedes - "The Open CAD" - (also called Arquimedes) is a computer-aided design (CAD) program being developed with direct input from architects and architecture firms. With this design philosophy,...

    Latest version of Archimedes - The Open CAD is 0.67.0 and it was released on 2012-07-04.

    Tags: Computeraided Design Software For Linux, Free Computeraided Design Software, Free Software Programmed In Java
  • Memoranda by The Memoranda Team

    Memoranda is an open source and cross-platform personal projects and diaries manager. It provides a set of tools to help a user to organize their daily work: * Notes editor for quick editing the...

    Latest version of Memoranda is 1.0-RC3.1 bugfix release and it was released on 2007-05-07.

    Tags: Free Personal Information Managers, Free Software Programmed In Java, Free Calendaring Software
  • OpenL Tablets by EIS Group

    OpenL Tablets is a business rule management system (BRMS) and a business rules engine (BRE) based on table representation of rules. Engine implements optimized sequential algorithm. OpenL includes...

    Latest version of OpenL Tablets is 5.16.2 and it was released on 2016-11-06.

    Tags: Rule Engines, Free Software, Free Business Software, Free Software Programmed In Java
  • OpenKM by OpenKM

    OpenKM is a Free/Libre document management system that provides a web interface for managing arbitrary files. OpenKM includes a content repository, Lucene indexing, and jBPM workflow. The OpenKM...

    Latest version of OpenKM is 6.3.0 and it was released on 2014-05-21.

    Tags: Free Content Management Systems, Free Software Programmed In Java, Java Platform Software, Document Management Systems, Free Groupware, Free Business Software
  • Eureka Streams by Lockheed Martin

    Eureka Streams is a free, open source enterprise social networking platform developed by Lockheed Martin. Activity streams and gadgets make up its core functionality. Content within Eureka Streams...

    Latest version of Eureka Streams is 1.0.2 and it was released on 2011-02-23.

    Tags: Professional Networks, 2010 Software, Free Business Software, Free Software Programmed In Java, Crossplatform Free Software, Lockheed Martin, Social Networking Services
  • agorum core by agorum Software GmbH

    agorum core is a free Open-Source Enterprise Content Management system by agorum Software GmbH from Germany. One of the main features is the Document-Network-Share. With that the documents within...

    Latest version of agorum core is 7.7 and it was released on 2015-05-05.

    Tags: Free Content Management Systems, Document Management Systems, Free Software Programmed In Java, Free Business Software, Free Groupware, Free Email Software, Free Email Server Software, Linux Companies
  • Alfresco Software Inc by Alfresco Software, Inc.

    Alfresco is a suite of digital information management systems for Microsoft Windows and Unix-like operating systems developed using Java technology. Their core offering, branded as a Digital...

    Latest version of Alfresco Software Inc. is Community Edition 201707 GA and it was released on 2017-06-12.

    Tags: Free Content Management Systems, Document Management Systems, Free Software Programmed In Java, Free Business Software, Digital Library Software
  • Activiti by Alfresco and the Activiti community

    Activiti is an open-source workflow engine written in Java that can execute business processes described in BPMN 2.0. Activiti is the foundation for Alfresco's Alfresco Process Services (APS) and...

    Latest version of Activiti is 6.0.0 and it was released on 26 May 2017.

    Tags: Workflow Technology, Java Enterprise Platform, Java Libraries, Crossplatform Free Software, Free Software Programmed In Java, Free Business Software
  • VisualAp

    VisualAp is a visual framework for building applications and emulate systems. VisualAp is cross-platform as it is a 100% Java application. This application is able to perform audio processing,...

    Tags: Image Processing Software, Free Audio Software, Java Libraries, Java Platform Software, Free Software Programmed In Java
  • Elasticsearch by Shay Banon

    Elasticsearch is a search engine based on Lucene. It provides a distributed, multitenant-capable full-text search engine with an url=HTTP]web interface and schema-free ] documents. Elasticsearch is...

    Latest version of Elasticsearch is 5.6.1 and it was released on 2017-09-18.

    Tags: Search Engine Software, Free Software Programmed In Java, Free Search Engine Software, Databaserelated Software For Linux, Internet Search Engines
  • Weka by University of Waikato

    Waikato Environment for Knowledge Analysis (Weka) is a suite of machine learning software written in Java, developed at the University of Waikato, New Zealand. It is free software licensed under the...

    Latest version of Weka is 3.8.1 (stable) and it was released on 2016-04-14.

    Tags: Data Mining And Machine Learning Software, Free Science Software, Free Software Programmed In Java, Free Data Analysis Software, Free Artificial Intelligence Applications, Software Using The Gpl License
  • Jitsi by [https://jitsi.org/index.php/Development/TeamAndContributors Jitsi Team and Contributors,]

    Jitsi (formerly SIP Communicator) is a free and open source multiplatform voice (VoIP), videoconferencing and instant messaging application for Windows, Linux, Mac OS X and Android. It supports...

    Tags: 2003 Software, Aim Clients, Crossplatform Free Software, Free And Opensource Android Software, Free Instant Messaging Clients, Free Software Programmed In Java, Free Voip Software, Free Xmpp Clients, Instant Messaging Clients Programmed In Java, Macos Instant Messaging Clients, Portable Software, Videoconferencing Software Programmed In Java, Videotelephony, Voice Over Ip Clients Programmed In Java, Voip Software, Windows Instant Messaging Clients
  • aTunes by Alex Aranda et al.

    aTunes is a free and open source audio player with MPlayer as its playback engine. aTunes supports MP3, Ogg Vorbis, FLAC and other formats. aTunes allows users to edit tags, organize music and rip...

    Tags: Free Audio Software, Free Software Programmed In Java, Free Media Players, Tag Editors, Jukeboxstyle Media Players, Podcasting Software, Windows Media Players, Linux Media Players, Audio Player Software For Linux
  • JDownloader

    JDownloader is a download manager, written in Java, which allows automatic download of groups of files from one-click hosting sites. JDownloader supports the use of premium accounts. Some parts, but...

    Tags: Download Managers, Free Application Software, Free Software Programmed In Java, 2008 Software
  • ImageJ by Wayne Rasband (retired from NIH)

    ImageJ is a public domain, Java-based image processing program developed at the National Institutes of Health. ImageJ was designed with an open architecture that provides extensibility via Java...

    Latest version of ImageJ is 1.51n and it was released on 2017-05-01.

    Tags: Free Science Software, Free Dicom Software, Free Bioimaging Software, Java Libraries, Java Platform Software, Free Software Programmed In Java, Publicdomain Software With Source Code
  • jFin

    jFin is a Free Software derivatives trade processing application written in Java. jFin is issued under the GNU General Public...

    Tags: Free Accounting Software, Free Software Programmed In Java
  • GATE by ,

    General Architecture for Text Engineering or GATE is a Java suite of tools originally developed at the University of Sheffield beginning in 1995 and now used worldwide by a wide community of...

    Tags: Data Mining And Machine Learning Software, Free Computer Libraries, Free Science Software, Free Software Programmed In Java, Free Integrated Development Environments, Knowledge Representation, Natural Language Processing Toolkits, Ontology Editors
  • Environment for DeveLoping KDDApplications Supported by IndexStructures by Ludwig Maximilian University of Munich,Heidelberg University,University of Southern Denmark

    ELKI (for Environment for DeveLoping KDD-Applications Supported by Index-Structures) is a knowledge discovery in databases (KDD, "data mining") software framework developed for use in research and...

    Latest version of Environment for DeveLoping KDD-Applications Supported by Index-Structures is 0.7.1 and it was released on 2016-02-11.

    Tags: Data Mining And Machine Learning Software, Free Artificial Intelligence Applications, Free Data Analysis Software, Free Science Software, Free Software Programmed In Java, Software Using The Gnu Agpl License
  • Deeplearning4j

    Deeplearning4j is a deep learning programming library written for Java and the Java virtual machine (JVM) and a computing framework with wide support for deep learning algorithms. Deeplearning4j...

    Latest version of Deeplearning4j is 0.7.2 and it was released on 2016-12-24.

    Tags: Applied Machine Learning, Artificial Neural Networks, Cluster Computing, Data Mining And Machine Learning Software, Deep Learning, Free Science Software, Free Software Programmed In Java, Free Software Programmed In Scala, Free Statistical Software, Hadoop, Image Processing, Information Technology Companies Of The United States, Java Libraries, Java Platform, Java Programming Language Family, Jvm Programming Languages, Machine Learning, Natural Language Processing, Numerical Programming Languages, Open Source Artificial Intelligence, Scala, Software Using The Apache License, Technology Companies Based In The San Francisco Bay Area
  • PDFtk by Sid Steward

    PDFtk (short for PDF Toolkit) is a cross-platform tool for manipulating Portable Document Format (PDF) documents. It comes in two versions: PDFtk Free (open source) and PDFtk Pro (proprietary paid)....

    Latest version of PDFtk is 2.02 and it was released on 2013-07-24.

    Tags: Free Pdf Software, Free Software Programmed In Java
  • PDFBox by Apache Software Foundation

    Apache PDFBox is an open source pure-Java library that can be used to create, render, print, split, merge, alter, verify and extract text and meta-data of PDF files. Open Hub reports over 11,000...

    Latest version of PDFBox is 2.0.6 and it was released on 2017-05-15.

    Tags: Apache Software Foundation, Java Platform, Free Pdf Software, Free Software Programmed In Java, Java Libraries, Software Using The Apache License
  • uDig by Refractions Research

    uDig is a GIS software program produced by a community led by Canadian-based consulting company Refractions Research. It is based on the Eclipse platform and features full layered Open Source GIS....

    Latest version of uDig is 1.4.0 and it was released on 2013-03-24.

    Tags: Free Gis Software, Free Software Programmed In Java
  • OpenOfficeorg by Sun Microsystems (1999-2009),Oracle Corporation (2010-2011)

    OpenOffice.org (OOo), commonly known as OpenOffice, is a discontinued open-source office suite. It was an open-sourced version of the earlier StarOffice, which Sun Microsystems acquired in 1999, for...

    Latest version of OpenOffice.org is 3.3 and it was released on 2011-01-25.

    Tags: 2002 Software, Crossplatform Free Software, Formerly Proprietary Software, Free Pdf Software, Free Software Programmed In C, Free Software Programmed In Java, Free Word Processors, Office Suites For Macos, Office Suites For Windows, Opensource Office Suites, Openoffice, Portable Software, Unix Software
  • Apache OpenOffice by Apache Software Foundation

    Apache OpenOffice (AOO) is an open-source office productivity software suite. It is one of the successor projects of OpenOffice.org and the designated successor of IBM Lotus Symphony. Apache...

    Tags: 2012 Software, Crossplatform Free Software, Formerly Proprietary Software, Free Pdf Software, Free Presentation Software, Free Software Programmed In C, Free Software Programmed In Java, Office Suites For Macos, Office Suites For Windows, Opensource Office Suites, Openoffice, Portable Software, Software Using The Apache License, Unix Software
  • Aika by Aika Project

    Aika is an open source text mining engine. It can automatically extract and annotate semantic information into text. In case this information is ambiguous, Aika will generate several hypothetical...

    Latest version of Aika is 0.5 and it was released on 2017-06-01.

    Tags: Data Mining And Machine Learning Software, Free Computer Libraries, Free Science Software, Knowledge Representation, Natural Language Processing Toolkits, Neuralnetworksoftware, Crossplatform Software, Java, Free Software Programmed In Java, Linguisticresearchsoftware
  • JumpOpenJUMP

    JUMP is a Java based vector and raster GIS and programming framework. Current development continues under the OpenJUMP...

    Latest version of Jump/OpenJUMP is 1.11 and it was released on 2017-04-13.

    Tags: Free Gis Software, Free Software Programmed In Java
  • ProjectLibre by Marc O'Brien, Laurent Chrettieneau

    ProjectLibre is an open source, freely available project management software system intended ultimately as a standalone replacement for Microsoft Project. ProjectLibre is written in the Java...

    Latest version of ProjectLibre is 1.7.0 and it was released on 2017-01-16.

    Tags: Free Software Programmed In Java, Free Project Management Software, Java Platform Software
  • gvSIG by gvSIG Association

    gvSIG is a geographic information system (GIS), that is, a desktop application designed for capturing, storing, handling, analyzing and deploying any kind of referenced geographic information in...

    Latest version of gvSIG is 2.3.1 and it was released on 2016-10-26.

    Tags: Free Gis Software, Free Software Programmed In Java, Geographic Information Systems
  • libGDX

    libGDX is a free and open-source game-development application framework written in the Java programming language with some C and C++ components for performance dependent code. It allows for the...

    Latest version of libGDX is 1.9.6 and it was released on 2017-03-05.

    Tags: Audio Libraries, Crossplatform Free Software, Free 3d Graphics Software, Free Computer Libraries, Free Game Engines, Free Graphics Software, Free Software Programmed In Java, Graphics Libraries, Java Apis, Java Libraries, Opengl, Software Using The Apache License, Video Game Development Software, Video Game Engines
  • GeoServer by Boundless Spatial,GeoSolutions,Refractions Research

    In computing, GeoServer is an open-source server written in Java that allows users to share, process and edit geospatial data. Designed for interoperability, it publishes data from any major spatial...

    Latest version of GeoServer is 2.9.0 and it was released on 2016-05-28.

    Tags: Free Software Programmed In Java, Geographical Technology, Free Gis Software
  • GeoNetwork opensource by FAO-UN, WFP,UNEP and UNOCHA

    The GeoNetwork opensource (GNOS) project is a free and open source (FOSS) cataloging application for spatially referenced resources. It is a catalog of location-oriented...

    Latest version of GeoNetwork opensource is 3.0.0 and it was released on 2015-04-29.

    Tags: Free Gis Software, Free Software Programmed In Java, Web Applications
  • Scipio ERP by ilscipio GmbH

    Scipio ERP is an open source enterprise resource planning (ERP) system and a modern fork of the Apache OFBiz project. The software provides a wide range of business applications and a multichannel...

    Latest version of Scipio ERP is 1.14.3 and it was released on 2017-07-01.

    Tags: Free Software, Free Business Software, Free Erp Software, Free Accounting Software, Free Customer Relationship Management Software, Free Ecommerce Software, Free Software Programmed In Java, Web Applications
  • Moqui

    Moqui is an open source enterprise resource planning (ERP) ecosystem for building enterprise automation applications based on Java. The source code is available under a CC0 public domain-like...

    Latest version of Moqui is 1.6.1 and it was released on 2016-01-25.

    Tags: Free Accounting Software, Free Ecommerce Software, Free Erp Software, Free Software Programmed In Java, Web Applications, Publicdomain Software With Source Code
  • iDempiere

    iDempiere Business Suite, also known as OSGi + ADempiere, is an open source Enterprise Resource Planning (ERP) software. It has also customer relationship management (CRM) and supply chain...

    Latest version of iDempiere is v4.1 and it was released on Daily release.

    Tags: Free Erp Software, Free Business Software, Free Software Programmed In Java, Enterprise Resource Planning Software For Linux, Software Forks
  • Apache OFBiz by Apache Software Foundation

    Apache OFBiz is an open source enterprise resource planning (ERP) system. It provides a suite of enterprise applications that integrate and automate many of the business processes of an...

    Latest version of Apache OFBiz is 16.11.03 and it was released on 2017-07-03.

    Tags: Apache Software Foundation, Free Accounting Software, Free Ecommerce Software, Free Industrial Software, Free Erp Software, Free Software Programmed In Java, Web Applications
  • ADempiere

    ADempiere is an Enterprise Resource Planning or ERP software package released under a free software license. The word adempiere in Italian means "to fulfill" or "to accomplish". The software is...

    Latest version of ADempiere is 3.9.0 and it was released on 2017-08-01.

    Tags: Free Customer Relationship Management Software, Free Erp Software, Free Software Programmed In Java, Software Forks, Enterprise Resource Planning Software For Linux
  • WilmaScope

    The WilmaScope 3D graph visualisation system is a Java 3D application that creates real-time 3D animations of dynamic graph (network) structures. It comes with a number of layout algorithm plugins,...

    Tags: Free 3d Graphics Software, Free Software Programmed In Java
  • Sunflow by Christopher Kulla

    Sunflow is an open source global illumination rendering system written in Java. The current status of the project is unknown, but the last announcement on the program's official page was made in...

    Latest version of Sunflow is 0.07.2 and it was released on 2007-02-09.

    Tags: 3d Rendering Software For Linux, Computeraided Design Software For Linux, Crossplatform Software, Free 3d Graphics Software, Free Computeraided Design Software, Free Software Programmed In Java, Global Illumination Software
  • Mifos X by Community for Open Source Microfinance / Keith Woodlock , John Woodlock

    Mifos X represents the next generation of Mifos - it is a free and open source technology platform for financial inclusion of the...

    Latest version of Mifos X is 1.22.0 and it was released on 2014-05-01.

    Tags: Financial Software, Free Software, Free Software Programmed In Java, Microfinance, Microfinance Software
  • JMule by JMule Team

    JMule is an open source file sharing client written in Java for eDonkey2000 networks. JMule is released under the terms of the GNU General Public License, it is based on Java platform and requires...

    Tags: File Sharing Software, Free File Sharing Software, Free Software Programmed In Java, Edonkey Clients For Linux
  • Waarp

    Waarp is a project that provides among other an open source massive file transfer monitor in Java, also known as managed file transfer. Its purpose is to enable bridging between several protocols...

    Latest version of Waarp is 3.0.5 and it was released on 2015-10-11.

    Tags: Managed File Transfer, Free File Transfer Software, Crossplatform Free Software, Free Software Programmed In Java, Software Using The Gpl License
  • yEd

    yEd is a free general-purpose diagramming program with a multi-document interface. It is a cross-platform application written in Java that runs on Windows, Linux, Mac OS, and other platforms that...

    Tags: Diagramming Software, Graph Drawing Software, Uml Tools, Unix Software, Classic Mac Os Software, Windows Textrelated Software, Macos Textrelated Software, Crossplatform Software, Free Software Programmed In Java
  • LimeWire by Lime Wire LLC

    LimeWire was a free peer-to-peer file sharing (P2P) client program that ran on Windows, Mac OS X, Linux, and other operating systems supported by the Java software platform. LimeWire used the...

    Latest version of LimeWire is 5.5.16 and it was released on 2010-10-26.

    Tags: 2000 Software, Java Platform Software, Windows File Sharing Software, Classic Mac Os Software, Macos File Sharing Software, File Sharing Software For Linux, Free File Sharing Software, Free Bittorrent Clients, Free Software Programmed In Java, Crossplatform Software, Software That Bundles Malware, Internet Services Shut Down By A Legal Challenge, Bittorrent Clients For Linux
  • FrostWire by The FrostWire Project

    FrostWire is a free, open source BitTorrent client first released in September 2004, as a fork of LimeWire. It was initially very similar to LimeWire in appearance and functionality, but over time...

    Tags: Bittorrent Clients, Gnutella Clients, Crossplatform Software, Windows File Sharing Software, Macos File Sharing Software, Free File Sharing Software, Free Bittorrent Clients, Android Software, Bittorrent Clients For Linux, Free And Opensource Android Software, Free Software Programmed In Java, Software Forks, 2004 Software
  • EgoNet by University of Florida

    EgoNet (Egocentric Network Study Software) for the collection and analysis of egocentric social network data. It helps the user to collect and analyse all the egocentric network data (all social...

    Latest version of EgoNet is 1.0.0 1ea8b79 and it was released on 2017-05-20.

    Tags: Social Networking Services, Data Analysis Software, Free Software Programmed In Java, Free Science Software
  • Apache James by Apache Software Foundation

    Apache James, a.k.a. Java Apache Mail Enterprise Server or some variation thereof, is an open source SMTP and POP3 mail transfer agent and NNTP news server written entirely in Java. James is...

    Latest version of Apache James is 3.0.0 and it was released on 2017-07-20.

    Tags: Apache Software Foundation, Free Email Server Software, Free Software Programmed In Java, Message Transfer Agents, Usenet Servers, Email Server Software For Linux
  • NASA World Wind by Ames Research Center (NASA)

    World Wind is an open-source (released under the NOSA license) virtual globe first developed by NASA in 2003 for use on personal computers and then further developed in concert with the open source...

    Tags: Virtual Globes, Keyhole Markup Language, Nasa Online, Linux Programming Tools, Macos Programming Tools, Programming Tools For Windows, Earth Sciences Graphics Software, Free Software Programmed In Java, Science Education Software, 2004 Software, Planetarium Software For Linux, Internet Software For Linux, Graphic Software In Meteorology, Satellite Imagery
  • Logisim by Carl Burch

    Logisim is a logic simulator which permits circuits to be designed and simulated using a graphical user interface. Released under the GNU Public License, Logisim is free software designed to run on...

    Latest version of Logisim is 2.7.1 and it was released on 2011-03-21.

    Tags: Electronic Circuit Simulators, Free Educational Software, Free Software Programmed In Java
  • Image Studio Lite by LI-COR Biosciences

    Image Studio™ Lite is free image processing software used for quantitation of Western blot images and images from related...

    Tags: Free Science Software, Free Software Programmed In Java
  • Infinispan by Red Hat

    Infinispan is a distributed cache and key-value NoSQL data store software developed by Red Hat. Java applications can embed it as library, use it as a service in WildFly or any non-java applications...

    Tags: Cache, Free Memory Management Software, Free Software Programmed In Java, Crossplatform Free Software
  • PackJacket by Amandeep Grewal, Manodasan Wignarajah

    PackJacket is an open source application to create cross-platform Java installers. The installer generated can be a JAR or an EXE. PackJacket takes care of the XML code, compiling to Java, and...

    Latest version of PackJacket is 0.4.2 and it was released on 2009-08-06.

    Tags: Installation Software, Free Installation Software, Free Software Programmed In Java
  • Syndie by jrandom, zzz, and others

    Syndie is an open source cross-platform computer application to syndicate (re-publish) data (mainly forums) over a variety of anonymous and non-anonymous computer networks. Syndie is capable of...

    Latest version of Syndie is 1.107b and it was released on 2016-08-14.

    Tags: Crossplatform Free Software, Free Internet Forum Software, Free Routing Software, Free Software Programmed In Java, Cryptographic Software, Anonymity Networks, Internet Privacy, Free Networkrelated Software, I2p
  • Signal by Open Whisper Systems and contributors

    Signal is an encrypted communications application for Android and iOS. It uses the Internet to send one-to-one and group messages, which can include files, voice notes, images and videos, and make...

    Tags: Crossplatform Software, Cryptographic Software, Free And Opensource Android Software, Free Instant Messaging Clients, Instant Messaging Clients, Free Security Software, Free Software Programmed In Java, Free Voip Software, Instant Messaging Clients Programmed In Java, Internet Privacy Software, Ios Software, Secure Communication
  • GenealogyJ by The GenealogyJ Team

    GenealogyJ is a viewer and editor for genealogic data, suitable for hobbyist, family historian and genealogy researcher. GenealogyJ is written in Java and so is available on most platforms and...

    Latest version of GenealogyJ is 3.0 and it was released on 2010-02-19.

    Tags: Free Genealogy Software, Free Software Programmed In Java
  • Areca Backup by Olivier PETRUCCI,Internationalization: Stephane BRUNEL

    Areca Backup is a personal file backup software developed in Java. It is released under the GNU General Public License (GPL)...

    Tags: Free Backup Software, Free Software Programmed In Java
  • PDFsam Basic by Andrea Vacondio

    PDFsam Basic or PDF Split and Merge is a free and open source cross-platform desktop application to split, merge, extract pages, rotate and mix PDF...

    Latest version of PDFsam Basic is 3.3.2 and it was released on 2017-05-19.

    Tags: Free Pdf Software, Free Software Programmed In Java
  • JOELib by JOELib development team

    JOELib is computer software, a chemical expert system used mainly to interconvert chemical file formats. Because of its strong relationship to informatics, this program belongs more to the category...

    Latest version of JOELib is 2007-03-03 and it was released on 2007-03-03.

    Tags: Free Science Software, Free Software Programmed In Java, Computational Chemistry Software, Science Software For Linux
  • deegree

    deegree supplies the building blocks of a Spatial Data Infrastructure, while implementing the standards of the Open Geospatial Consortium (OGC) and ISO/TC 211. The Java-based deegree framework is...

    Latest version of deegree is 3.3.14 and it was released on 2015-02-10.

    Tags: Free Gis Software, Free Software Programmed In Java, Geographic Information Systems
  • Kune by Comunes Collective, IEPALA Foundation

    Kune is a free/open source distributed social network focused on collaboration rather than just on communication. That is, it focuses on online real-time collaborative editing, decentralized social...

    Latest version of Kune is 1.0.0 (Codename "free-riders") and it was released on 2015-03-18.

    Tags: Articles Created Via The Article Wizard, Project Hosting Websites, Creative Commonslicensed Websites, Collaborative Projects, Virtual Communities, Online Communities For Social Change, Free Groupware, Free Project Management Software, Multilingual Websites, Community Websites, Social Networking Services, Web Applications, Instant Messaging, Online Chat, Social Information Processing, Groupware, Wikis, Blog Software, Collaborative Realtime Editors, 2012 Software, Electronic Documents, Free Software, Free Software Programmed In Java, Crossplatform Free Software, Internet Properties Established In 2007, Software Using The Gnu Agpl License
  • jrMan by jrMan Team

    jrMan renderer is an open source version of the Reyes rendering algorithm used by Pixar's PhotoRealistic RenderMan, implemented in Java by Gerardo Horvilleur, Jorge Vargas, Elmer Garduno and...

    Latest version of jrMan is 0.4 and it was released on February 20, 2007.

    Tags: Free 3d Graphics Software, Free Software Programmed In Java
  • ND4S NDimensional Arrays for Scala

    ND4S is a free, open-source extension of the Scala programming language operating on the Java Virtual Machine - though it is compatible with both Java and Clojure. ND4S is a scientific computing...

    Latest version of ND4S: N-Dimensional Arrays for Scala is 0.7.2 and it was released on 2016-12-27.

    Tags: Array Programming Languages, Numerical Programming Languages, Data Mining And Machine Learning Software, Free Statistical Software, Java Platform, Java Programming Language Family, Jvm Programming Languages, Scala, Linear Algebra, Numerical Analysis, Computational Statistics, Artificial Neural Networks, Free Software Programmed In Java, Free Science Software, Numerical Analysis Software For Linux, Numerical Analysis Software For Macos, Numerical Analysis Software For Windows, Free Mathematics Software, Java Libraries, Numerical Software, Cluster Computing, Hadoop, Software Using The Apache License, Free Software Programmed In Scala
  • ND4J NDimensional Arrays for Java by Various

    ND4J is a scientific computing library, written in the programming language C++, operating on the Java virtual machine (JVM), and compatible with the languages Java, Scala, and Clojure. ND4J is for...

    Latest version of ND4J: N-Dimensional Arrays for Java is 0.5.0 and it was released on 2016-08-03.

    Tags: Array Programming Languages, Numerical Programming Languages, Data Mining And Machine Learning Software, Free Statistical Software, Java Platform, Java Programming Language Family, Jvm Programming Languages, Scala, Linear Algebra, Numerical Analysis, Computational Statistics, Artificial Neural Networks, Free Software Programmed In Java, Free Science Software, Numerical Analysis Software For Linux, Numerical Analysis Software For Macos, Numerical Analysis Software For Windows, Free Mathematics Software, Java Libraries, Numerical Software, Cluster Computing, Hadoop, Software Using The Apache License
  • Endeavour Software Project Management by Ezequiel Cuellar

    Endeavour Software Project Management is an open-source solution to manage large-scale enterprise software projects in an iterative and incremental development...

    Latest version of Endeavour Software Project Management is 1.25 and it was released on 2011-05-01.

    Tags: Software Project Management, Software Requirements, Bug And Issue Tracking Software, Software Testing, Software Development Process, Free Software Programmed In Java, Free Project Management Software
  • Apache Roller by Apache Software Foundation

    Apache Roller is a Java-based Open Source "full-featured, Multi-blog, Multi-user, and group-blog server suitable for blog sites large and small". Roller was originally written by Dave Johnson in...

    Latest version of Apache Roller is 5.1.2 and it was released on 2015-03-01.

    Tags: Apache Software Foundation, Free Content Management Systems, Blog Software, Free Software Programmed In Java
  • Java Analysis Studio by FreeHEP

    Java Analysis Studio (JAS) is an object oriented data analysis package developed for the analysis of particle physics data. The latest major version is JAS3. JAS3 is particularly notable for being...

    Latest version of Java Analysis Studio is JAS3, 3.0.3 and it was released on 2013-06-10.

    Tags: Data Analysis Software, Experimental Particle Physics, Free Software Programmed In Java, Free Statistical Software, Numerical Software, Physics Software
  • JFire by {{URL|www.nightlabs.org}}

    JFire was an Enterprise Resource Planning and Customer Relationship Management system. The system has been written entirely in Java and is based on the technologies Java EE 5 (formerly J2EE), JDO...

    Latest version of JFire is 1.2.0-farnsworth and it was released on 2011-11-30.

    Tags: Accounting Software, Free Business Software, Free Accounting Software, Free Erp Software, Free Customer Relationship Management Software, Free Software Programmed In Java, Free Reporting Software, Enterprise Resource Planning Software For Linux
  • Sweet Home 3D by Emmanuel Puybaret /

    Sweet Home 3D is a free interior design software application that allows for the planning and development of floor plans, as well as the ability to arrange furniture on it and view the results in...

    Latest version of Sweet Home 3D is 5.5 and it was released on 2017-09-06.

    Tags: 2000 Software, 3d Graphics Software, Free Software Programmed In Java, Free Computeraided Design Software
  • metasfresh by metas GmbH, Community

    metasfresh is an Open Source / Free Software Enterprise Ressource Planning (ERP) software designed and developed for Small and medium-sized companies...

    Tags: Free Erp Software, Free Business Software, Free Customer Relationship Management Software, Free Accounting Software, Free Software Programmed In Java, Enterprise Resource Planning Software For Linux, Erp Software, Accounting Software, Crm Software Companies
  • Art of Illusion

    Art of Illusion is a free, open source software package for creating 3D-graphics. It provides tools for 3D-modeling, creating and mapping textures and rendering both, still images and animations....

    Latest version of Art of Illusion (software) is 3.0.3 and it was released on 2016-12-12.

    Tags: 3d Graphics Software, 3d Animation Software, Global Illumination Software, Crossplatform Free Software, Free 3d Graphics Software, Free Software Programmed In Java, Portable Software
  • Compendium by Compendium Institute

    Compendium is a computer program and social science tool that facilitates the mapping and management of ideas and arguments. The software provides a visual environment that allows people to...

    Tags: Argument Mapping, Collaborative Software, Java Platform Software, Mindmapping Software, Notetaking Software, Free Qda Software, Free Software Programmed In Java, Concept And Mindmapping Software Programmed In Java
  • Electric

    The Electric VLSI Design System is an EDA tool written in the early 1980s by Steven M. Rubin. Electric is used to draw schematics and to do integrated circuit layout. It can also handle hardware...

    Latest version of Electric is 9.07 and it was released on 2016-11-22.

    Tags: Computeraided Design Software, Electronic Design Automation Software For Linux, Free Computeraided Design Software, Free Electronic Design Automation Software, Free Software Programmed In Java, Gnu Project Software
  • 3D Slicer

    3D Slicer (Slicer) is a free and open source software package for image analysis and scientific visualization. Slicer is used in a variety of medical applications, including autism, multiple...

    Latest version of 3D Slicer is 4.6.2 and it was released on 2016-11-08.

    Tags: Computer Vision Software, Free 3d Graphics Software, Free Bioimaging Software, Free Biovisualization Software, Free Dicom Software, Free Healthcare Software, Free Science Software, Free Software Programmed In C, Free Software Programmed In Java, Free Software Programmed In Python, Free Software Programmed In Tcl, Science Software For Linux, Science Software That Uses Qt
  • I2P The Anonymous Network

    The Invisible Internet Project (I2P) is a garlic routing using overlay network and darknet that allows applications to send messages to each other pseudonymously and securely. Uses include anonymous...

    Latest version of I2P - The Anonymous Network is 0.9.31 and it was released on 2017-08-07.

    Tags: I2p, Anonymity Networks, Anonymous File Sharing Networks, Crossplatform Free Software, Crossplatform Software, Cryptographic Software, Cryptographic Protocols, Dark Web, Free Communication Software, Free Multilingual Software, Free Networkrelated Software, Free Routing Software, Free Software Programmed In Java, Free And Opensource Android Software, Internet Privacy Software, Peertopeer Computing, Privacy Software, 2003 Software, Software Using The Mit License
  • Ganymede

    Ganymede is an open source network directory management framework, designed to allow administrator teams to collaboratively manage subsets of an organization's network directory services, such as...

    Tags: Directory Services, Crossplatform Free Software, Dns Software, Identity Management, Identity Management Systems, Free Software, Free Network Management Software, Free Software Programmed In Java, Software Using The Gpl License, 1998 Software
  • VTK by Kitware Inc.

    The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several...

    Latest version of VTK is 8.0.0 and it was released on 2017-06-26.

    Tags: Computer Vision Software, Free 3d Graphics Software, Free Biovisualization Software, Free Healthcare Software, Free Science Software, Free Software Programmed In C, Free Software Programmed In Java, Free Software Programmed In Perl, Free Software Programmed In Python, Free Software Programmed In Tcl, Software That Uses Qt, Software That Uses Tk, Software Using The Bsd License
  • CrypTool by Bernhard Esslinger,,,,,

    CrypTool is an open source project. The main result is the free e-learning software CrypTool illustrating cryptographic and cryptanalytic concepts. According to "Hakin9" CrypTool is worldwide the...

    Tags: 1998 Software, Free Educational Software, Cryptographic Software, Free Software Programmed In C, Free Software Programmed In Java, Free Software Programmed In C Sharp, Windowsonly Free Software, Cryptography, Cryptography Contests
  • Eclipse BIRT Project by Eclipse Foundation

    The Business Intelligence and Reporting Tools (BIRT) Project is an open source software project that provides reporting and business intelligence capabilities for rich client and web applications,...

    Latest version of Eclipse BIRT Project is 4.6.0 and it was released on 2016-06-22.

    Tags: Business Intelligence, Free Reporting Software, Free Software Programmed In Java, Eclipse, Eclipse Technology, Eclipse Software
  • jMonkeyEngine by The jME core team

    jMonkeyEngine (jME) is a game engine made especially for modern 3D development, as it uses shader technology extensively. 3d games can be written for both android and desktop devices using this...

    Latest version of jMonkeyEngine is 3.1.0 Stable and it was released on 2017-02-13.

    Tags: 2003 Software, 3d Scenegraph Apis, Free 3d Graphics Software, Free Game Engines, Free Software Programmed In Java, Java Libraries, Video Game Engines, Software Using The Bsd License
  • JabRef by The JabRef team

    JabRef is a reference management software that uses BibTeX and BibLaTeX as its native formats and is therefore typically used for LaTeX. During the week of October 15, 2015, it had 4,856...

    Latest version of JabRef is 3.8.2 and it was released on 2017-01-29.

    Tags: Free Bibtex Software, Free Reference Management Software, Free Software Programmed In Java, Linux Tex Software, Reference Management Software, Tex Sourceforge Projects
  • Compiere by Consona Corporation

    Compiere (pronounced KOM-pyeh-reh, "to accomplish, complete, fulfill" in Italian) is an open source ERP and CRM business solution for the Small and Medium-sized Enterprise (SME) in distribution,...

    Latest version of Compiere is 3.3 and it was released on 2009-03-24.

    Tags: Free Customer Relationship Management Software, Free Erp Software, Business Software For Linux, Free Software Programmed In Java
  • Kosmo by SAIG S.L.

    Kosmo is a desktop geographic information system (GIS) with advanced functions. It is the first of a series of developments that are being made available to the community. Kosmo was implemented...

    Latest version of Kosmo is 2.0 and it was released on 2011-02-17.

    Tags: Free Gis Software, Free Software Programmed In Java
  • iText by iText Group NV

    iText is an open source library for creating and manipulating PDF files in Java. iText was written by Bruno Lowagie, Paulo Soares and others. The source code was initially distributed under the...

    Latest version of iText® is 5.5.12 and it was released on 2017-08-18.

    Tags: Free Pdf Software, Free Typesetting Software, Free Software Programmed In C Sharp, Free Software Programmed In Java, Java Platform, Java Libraries, C Sharp Libraries, Software Using The Gnu Agpl License
  • easyrec by Studio Smart Agent Technologies

    easyrec is an open-source program that provides personalized recommendations using RESTful Web services to be integrated into Web enabled applications. It is distributed under the GNU General Public...

    Latest version of easyrec is 1.0.4 and it was released on 2016-05-13.

    Tags: Recommender Systems, Crossplatform Software, Crossplatform Free Software, Free Software Programmed In Java, Free Application Software, Free Web Software, Software Projects, Web Applications, Mediawiki Extensions
  • LibrePlan by Igalia

    LibrePlan is a free software web application for project management, developed by the Fundación para o Fomento da Calidade Industrial e Desenvolvemento Tecnolóxico de Galicia, dependent of the...

    Latest version of LibrePlan is 1.4.1 and it was released on 2015-04-21.

    Tags: Free Application Software, Project Management, Free Software Programmed In Java, Free Project Management Software, Java Platform Software, Software Using The Gnu Agpl License
  • MOEA Framework

    The MOEA Framework is an open-source evolutionary computation library for Java that specializes in multi-objective optimization. It supports a variety of multiobjective evolutionary algorithms...

    Latest version of MOEA Framework is 2.7 and it was released on 2015-12-11.

    Tags: Evolutionary Computation, Free Software Programmed In Java, Free Mathematics Software, Mathematical Optimization, Operations Research, Free Application Software, Free Science Software, Free Computer Libraries
  • SWISSMODEL

    SWISS-MODEL is a structural bioinformatics web-server dedicated to homology modeling of protein 3D structures. Homology modeling is currently the most accurate method to generate reliable...

    Tags: Bioinformatics, Molecular Modelling Software
  • MesoBioNano Studio by MBN Research Center

    MBN Studio (MesoBioNano Studio) is a general-purpose computer program for molecular modeling and design, as well as for visualization and analysis of atomistic simulations data. It is written in the...

    Latest version of MesoBioNano Studio is 3.0 and it was released on 2017-03-31.

    Tags: Molecular Modelling Software, Molecular Modelling, Physics Software
  • LigandScout by Inte:Ligand GmbH

    LigandScout is computer software that allows creating three-dimensional (3D) pharmacophore models from structural data of macromolecule-ligand complexes, or from training and test sets of organic...

    Latest version of LigandScout is 4.0 and it was released on {{Start date and age|2016}}.

    Tags: Medicinal Chemistry, Molecular Modelling Software
  • Biochemical and Organic Simulation System by Jorgensen Research Group, Yale University

    Biochemical and Organic Simulation System (BOSS) is a general-purpose molecular modeling program that performs molecular mechanics calculations, Metropolis Monte Carlo statistical mechanics...

    Latest version of Biochemical and Organic Simulation System is 4.9 and it was released on {{Start date and age|2013|01}}.

    Tags: Molecular Modelling Software, Monte Carlo Molecular Modelling Software
  • Yet Another Scientific Artificial Reality Application by YASARA Biosciences,WHAT IF Foundation,Spronk NMR Consultancy

    Yet Another Scientific Artificial Reality Application (YASARA) is a computer program for molecular visualising, modelling, and dynamics. It has many scientific uses, as expressed by the large number...

    Latest version of Yet Another Scientific Artificial Reality Application is 16.7.22 and it was released on 2016-07-22.

    Tags: Molecular Modelling Software, Molecular Dynamics Software
  • MacroModel by Schrödinger, LLC

    MacroModel is a computer program for molecular modelling of organic compounds and biopolymers. It features various chemistry force fields, plus energy minimizing algorithms, to predict geometry and...

    Latest version of MacroModel is 11.3 and it was released on {{Start date and age|2016|03}}.

    Tags: Molecular Modelling Software, Molecular Dynamics Software
  • MMTK

    The Molecular Modelling Toolkit (MMTK) is an open-source software package written in Python, which performs common tasks in molecular modelling. , MMTK consists of about 18,000 lines of Python...

    Latest version of MMTK is 2.7.4 and it was released on 2011-04-28.

    Tags: Molecular Modelling Software, Molecular Dynamics Software, Python Software
  • MesoBioNano Explorer by MBN Research Center

    MBN Explorer (MesoBioNano Explorer) is a software package for molecular dynamics simulations, structure optimization and kinetic Monte Carlo simulations. It is designed for computational analysis of...

    Latest version of MesoBioNano Explorer is 3.0 and it was released on 2017-03-31.

    Tags: Molecular Dynamics Software, Molecular Modelling Software, Physics Software
  • VMD by University of Illinois at Urbana-Champaign

    Visual molecular dynamics (VMD) is a molecular modelling and visualization computer program. VMD is developed as mainly a tool to view and analyze the results of molecular dynamics simulations. It...

    Latest version of VMD is 1.9.3 and it was released on {{Start date and age|2016|11}}.

    Tags: Molecular Modelling Software
  • CoNTub

    CoNTub is a software project written in Java which runs on Windows, Mac OS X, Linux and Unix Operating systems through any Java-enabled web browser. It is the first implementation of an algorithm...

    Latest version of CoNTub is 2.0 and it was released on {{release date and age |2011|09}}.

    Tags: Molecular Modelling Software, Freeware, Science Software, Java Platform Software
  • Ascalaph Designer by Agile Molecule

    Ascalaph Designer is a computer program for general purpose molecular modelling for molecular design and simulations. It provides a graphical environment for the common programs of quantum and...

    Latest version of Ascalaph Designer is 1.8.94 and it was released on 2015-12-03.

    Tags: Molecular Modelling Software, Molecular Dynamics Software, Free Science Software
  • Foldinghome by Pande Laboratory, Sony,Nvidia,ATI, Cauldron Development

    Folding@home (FAH or F@h) is a distributed computing project for disease research that simulates protein folding, computational drug design, and other types of molecular dynamics. The project uses...

    Latest version of Folding@home is 7.4.4 and it was released on 2014-03-19.

    Tags: Computerrelated Introductions In 2000, Bioinformatics, Computational Biology, Computational Chemistry, Crossplatform Software, Data Mining And Machine Learning Software, Distributed Computing Projects, Hidden Markov Models, Mathematical And Theoretical Biology, Molecular Dynamics Software, Molecular Modelling, Molecular Modelling Software, Playstation 3 Software, Proprietary Crossplatform Software, Protein Folds, Protein Structure, Simulation Software, Stanford University, Medical Technology, Medical Research Organizations, Science Software For Linux, Science Software For Macos, Science Software For Windows
  • LIGPLOT by European Bioinformatics Institute

    In bioinformatics LIGPLOT is a computer program that generates schematic 2-D representations of protein-ligand complexes from standard Protein Data Bank file input. The LIGPLOT is used to generate...

    Tags: Molecular Modelling Software
  • Extensible Computational Chemistry Environment by Pacific Northwest National Laboratory

    The Extensible Computational Chemistry Environment (ECCE, pronounced "etch-ā") provides a sophisticated graphical user interface, scientific visualization tools, and the underlying data management...

    Latest version of Extensible Computational Chemistry Environment (ECCE) is 7.0 and it was released on 2013-08-01.

    Tags: Molecular Modelling Software, Computational Chemistry Software
  • ICMBrowser by Molsoft LLC

    ICM-Browser is a free product of Molsoft, and provides access to structural biology data and protein families. It reads PDB or alignment files directly from online databases and provides a molecular...

    Latest version of ICM-Browser is 3.5-0 and it was released on February 21, 2007.

    Tags: Molecular Modelling Software, Computational Chemistry Software
  • Avizo

    Avizo (pronounce: ‘a-VEE-zo’) is a general-purpose commercial software application for scientific and industrial data visualization and analysis. Avizo is developed by FEI Visualization Sciences...

    Latest version of Avizo is 9.2 and it was released on {{Start date and age|2016|07}}.

    Tags: 3d Graphics Software, 3d Imaging, Computational Fluid Dynamics, Computer Vision Software, Data Visualization Software, Earth Sciences Graphics Software, Graphics Software, Image Processing Software, Image Segmentation, Mesh Generators, Molecular Dynamics Software, Molecular Modelling Software, Nondestructive Testing, Physics Software, Science Software, Simulation Software, Software That Uses Qt, Virtual Reality
  • ADF Info by Scientific Computing & Modelling

    Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory (DFT). ADF was first developed in the early...

    Latest version of ADF Info is 2017.106 and it was released on June 2017.

    Tags: Computational Chemistry Software, Molecular Modelling Software, Molecular Dynamics Software, Density Functional Theory Software
  • Spartan by Wavefunction, Inc. & Q-Chem

    Spartan is a molecular modelling and computational chemistry application from Wavefunction. It contains code for molecular mechanics, semi-empirical methods, ab initio models, density functional...

    Latest version of Spartan is Spartan'16 and it was released on {{Start date and age|2016}}.

    Tags: Molecular Modelling Software, Computational Chemistry Software, Electronic Structure Methods, Monte Carlo Molecular Modelling Software