Get Alternative find best software

Bioconductor

Bioinformatics

Bioconductor Description
Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology.
Bioconductor is based primarily on the statistical R programming language, but does contain contributions in other programming languages. It has two releases each year that follow the semiannual releases of R. At any one time there is a release version, which corresponds to the released version of R, and a development version, which corresponds to the development version of R. Most users will find the release version appropriate for their needs. In addition there are a large number of genome annotation packages available that are mainly, but not solely, oriented towards different types of microarrays.
The project was started in the Fall of 2001 and is overseen by the Bioconductor core team, based primarily at the Fred Hutchinson Cancer Research Center, with other members coming from international institutions.
A list below shows Bioconductor alternatives which were either selected by us or voted for by users. You can filter this list by tags and platforms

Latest version of Bioconductor is 3.5 and it was released on 2017-04-25.

Bioconductor Alternatives

  • UCSF Chimera by Resource for Biocomputing, Visualization, and Informatics (RBVI), UCSF

    UCSF Chimera (or simply Chimera) is an extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies,...

    Latest version of UCSF Chimera is 1.11.2 and it was released on 2016-12-02.

    Tags: Bioinformatics Software, Freeware, Molecular Modelling Software, Science Software
  • TreeFinder by Gangolf Jobb

    Treefinder is a computer program for the likelihood-based reconstruction of phylogenetic trees from molecular sequences. It was written by Gangolf Jobb, a former researcher at the University of...

    Latest version of TreeFinder is march2011 and it was released on 2011-03-01.

    Tags: Computational Phylogenetics, Bioinformatics Software, Science Software, Molecular Biology, Genetics
  • TCoffee by Cédric Notredame, Centro de Regulacio Genomica (CRG) - Barcelona

    T-Coffee (Tree-based Consistency Objective Function For alignment Evaluation) is a multiple sequence alignment software using a progressive approach. It generates a library of pairwise alignments to...

    Latest version of T-Coffee is 11.00.8cbe486 and it was released on 2014-08-13.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • SPAdes by St. Petersburg State University, Russia,St. Petersburg Academic University, Russia,University of California, San Diego, USA

    SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. However, it might not be suitable for large genomes...

    Latest version of SPAdes is 3.10.1 and it was released on March 1st, 2017.

    Tags: Bioinformatics Algorithms, Bioinformatics Software, Dna Sequencing, Metagenomics Software
  • SEQUEST

    SEQUEST is a tandem mass spectrometry data analysis program used for protein identification. Sequest identifies collections of tandem mass spectra to peptide sequences that have been generated from...

    Tags: Proteomics, Bioinformatics Software, Mass Spectrometry Software
  • by Bennett N.F., Ganesan N Georgetown University

    Sequerome is a web-based Sequence profiling tool for integrating the results of a BLAST sequence-alignment report with external research tools and servers that perform advanced sequence...

    Tags: Bioinformatics Software, Freeware
  • RasMol by Herbert J. Bernstein

    RasMol is a computer program written for molecular graphics visualization intended and used mainly to depict and explore biological macromolecule structures, such as those found in the Protein Data...

    Latest version of RasMol is 2.7.5.1 and it was released on 2009-07-17.

    Tags: Bioinformatics Software, Molecular Modelling Software, Free Science Software, Free Software Programmed In C, Free Educational Software
  • PICRUSt by Morgan Langille,Jesse Zaneveld,Daniel McDonald,Greg Caporaso,Gavin Douglas

    PICRUSt is a bioinformatics software package. The name is an abbreviation for Phylogenetic Investigation of Communities by Reconstruction of Unobserved States. The tool serves in the field of...

    Tags: Metagenomics, Bioinformatics Software, Environmental Microbiology
  • Phyre2 by {{Plainlist| * Lawrence Kelley * Bob Maccallum * Benjamin Jefferys * Alex Herbert * Riccardo Bennett-Lovsey *Michael Sternberg}}

    Phyre and Phyre2 (Protein Homology/AnalogY Recognition Engine; pronounced as 'fire') are web-based services for protein structure prediction that are free for non-commercial use. Phyre is among the...

    Latest version of Phyre2 is 2.0 and it was released on 2011-02-23.

    Tags: Bioinformatics Software, Computational Science
  • PHYLogeny Inference Package by University of Washington

    PHYLogeny Inference Package (PHYLIP) is a free computational phylogenetics package of programs for inferring evolutionary trees (phylogenies). It consists of 35 portable programs, i.e., the source...

    Latest version of PHYLogeny Inference Package is 3.696 and it was released on 2014-11-02.

    Tags: Computational Phylogenetics, Bioinformatics Software
  • OpenChrom by Philip Wenig, Alexander Kerner, Lorenz Gerber, Matthias Mailänder, ...

    OpenChrom is an open source software for the analysis and visualization of mass spectrometric and chromatographic data. Its focus is to handle native data files from several mass spectrometry...

    Latest version of OpenChrom is 1.2.0 and it was released on 2017-08-25.

    Tags: Bioinformatics Software, Mass Spectrometry Software, Chemistry Software For Linux, Science Software For Macos, Science Software For Windows, Chromatography Software, Eclipse Software
  • OLIGO Primer Analysis Software by Molecular Biology Insights, Inc.

    OLIGO Primer Analysis Software was the first publicly available software for DNA primer design. The first papers describing this software were published in 1989 and 1990, and consecutive upgrades in...

    Latest version of OLIGO Primer Analysis Software is 7.54 and it was released on March 23, 2011.

    Tags: Bioinformatics Software
  • MUltiple Sequence Comparison by LogExpectation by drive5

    MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is computer software for multiple sequence alignment of protein and nucleotide sequences. It is licensed as public domain. The method was...

    Latest version of MUltiple Sequence Comparison by Log-Expectation is 3.8.31 and it was released on 2016-08-18.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Modeller by University of California, San Francisco,Accelrys

    Modeller, often stylized as MODELLER, is a computer program used for homology modeling to produce models of protein tertiary structures and quaternary structures (rarer). It implements a method...

    Latest version of Modeller is 9.19 and it was released on 2017-07-25.

    Tags: Molecular Modelling Software, Bioinformatics Software, Computational Biology
  • MEGAN by Daniel Huson et al.

    MEGAN ("MEtaGenome ANalyzer") is a computer program that allows optimized analysis of large metagenomic datasets. Metagenomics is the analysis of the genomic sequences from a usually uncultured...

    Latest version of MEGAN is 6.4 and it was released on 2016.

    Tags: Metagenomics Software, Bioinformatics Software, Computational Phylogenetics, Genetics, Molecular Biology
  • Molecular Evolutionary Genetics Analysis by Pennsylvania State University

    Molecular Evolutionary Genetics Analysis (MEGA) is computer software for conducting statistical analysis of molecular evolution and for constructing phylogenetic trees. It includes many...

    Latest version of Molecular Evolutionary Genetics Analysis is 7.0.26 and it was released on {{Start date and age|2017|05}}.

    Tags: Data Visualization Software, Bioinformatics Software
  • Mascot

    Mascot is a software search engine that uses mass spectrometry data to identify proteins from peptide sequence databases. Mascot is widely used by research facilities around the world. Mascot uses a...

    Latest version of Mascot is 2.6.00 and it was released on {{Start date and age|2016|12|df=yes}}.

    Tags: Proteomics, Bioinformatics Software, Mass Spectrometry Software
  • Jmol by Jmol development team

    Jmol is computer software for molecular modelling chemical structures in 3-dimensions. Jmol returns a 3D representation of a molecule that may be used as a teaching tool, or for research e.g., in...

    Tags: Bioinformatics Software, Chemistry Software For Linux, Free Chemistry Software, Free Software Programmed In Java, Molecular Modelling Software
  • MacVector by MacVector, Inc.

    MacVector is a commercial sequence analysis application for Apple Macintosh computers running Mac OS X. It is intended to be used by molecular biologists to help analyze, design, research and...

    Latest version of MacVector is 15.5.3 and it was released on [wiki=ecb0313c48409e389f36a444b070e0da]10 July 2016[/wiki].

    Tags: Bioinformatics Software, Computational Science
  • Kepler Scientific Workflow System

    Kepler is a free software system for designing, executing, reusing, evolving, archiving, and sharing scientific workflows. Kepler's facilities provide process and data monitoring, provenance...

    Latest version of Kepler Scientific Workflow System is 2.5 and it was released on 2015-10-28.

    Tags: Workflow Technology, Bioinformatics Software
  • ITASSER by Yang Zhang Lab

    I-TASSER (Iterative Threading ASSEmbly Refinement) is a bioinformatics method for predicting three-dimensional structure model of protein molecules from amino acid sequences. It detects structure...

    Tags: Bioinformatics, Bioinformatics Software
  • HHsearch by Johannes Söding

    HHsearch is an open-source software program for protein sequence searching that is part of the free HH-suite software package. HHpred is a free protein function and protein structure prediction...

    Latest version of HHsearch is 2.0.16 and it was released on 2013-02-18.

    Tags: Bioinformatics Software, Computational Science
  • HHsuite by Johannes Söding, Michael Remmert, Andreas Biegert, Andreas Hauser, Markus Meier, Martin Steinegger

    The HH-suite is an open-source software package for sensitive protein sequence searching. It contains programs that can search for similar protein sequences in protein sequence databases. These...

    Latest version of HH-suite is 2.0.16 and it was released on 2013-02-18.

    Tags: Bioinformatics Software, Computational Science
  • geWorkbench by Columbia University,,First Genetic Trust,National Cancer Institute

    geWorkbench (genomics Workbench) is an open-source software platform for integrated genomic data analysis. It is a desktop application written in the programming language Java. geWorkbench uses a...

    Latest version of geWorkbench is 2.6.0.3 and it was released on 2016-12-21.

    Tags: Bioinformatics Software, Free Software, Cluster Analysis, Systems Biology, Protein Structure, Gene Expression
  • GenMAPP by Alexander Pico, Kristina Hanspers, Nathan Salomonis, Kam Dahlquist, Scott Doniger, Jeff Lawlor, Alex Zambon, Lynn Ferrante, Karen Vranizan, Steven C. Lawlor, Bruce Conklin

    GenMAPP (Gene Map Annotator and Pathway Profiler) is a free, open-source bioinformatics software tool designed to visualize and analyze genomic data in the context of pathways (metabolic,...

    Tags: Bioinformatics Software, Free Science Software, Systems Biology, Windowsonly Free Software
  • GENESIS

    GENESIS (The GEneral NEural SImulation System) is a simulation environment for constructing realistic models of neurobiological systems at many levels of scale including: sub-cellular processes,...

    Latest version of GENESIS is 2.4 and it was released on {{Start date and age|2014|11}}.

    Tags: 1988 Software, Bioinformatics Software, Artificial Intelligence, Software Using The Gpl License
  • GeneMark by Georgia Institute of Technology

    GeneMark is a generic name for a family of ab initio gene prediction programs developed at the Georgia Institute of Technology in Atlanta. Developed in 1993, original GeneMark was used in 1995 as a...

    Tags: Metagenomics Software, Mathematical And Theoretical Biology, Genomics, Bioinformatics Software
  • GeneNetwork by GeneNetwork Development Team, University of Tennessee

    GeneNetwork is a combined database and open source bioinformatics data analysis software resource for systems genetics. This resource is used to study gene regulatory networks that link DNA sequence...

    Latest version of GeneNetwork is 2.0 and it was released on 2017-06-02.

    Tags: Biological Databases, Systems Biology, Bioinformatics Software, Software Using The Gnu Agpl License
  • Galaxy

    Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not...

    Latest version of Galaxy is 17.01 and it was released on 2017-02-23.

    Tags: Bioinformatics Software, Free Software Projects, Workflow Software
  • FastPCR

    FastPCR is an integrated tool for PCR primers or probes design, in silico PCR, oligonucleotide assembly and analyses, alignment and repeat...

    Tags: Bioinformatics, Bioinformatics Software, Polymerase Chain Reaction
  • DAVID Bioinformatics Resources by Laboratory of Immunopathogenesis and Bioinformatics

    DAVID (the Database for Annotation, Visualization and Integrated Discovery) is a free online url=://david.abcc.ncifcrf.gov The DAVID Bioinformatics Resources consists of the DAVID Knowledgebase and...

    Latest version of DAVID Bioinformatics Resources is 6.7 and it was released on 2010-01-27.

    Tags: Biological Databases, Bioinformatics Software, Laboratory Software, Systems Biology
  • CSBLAST by Angermueller C, Biegert A, and Soeding J

    CS-BLAST (Context-Specific BLAST) is a tool that searches a protein sequence that extends BLAST (Basic Local Alignment Search Tool), (Basic Local Alignment Search Tool) using context-specific...

    Latest version of CS-BLAST is 2.2.3 and it was released on 2013-12-07.

    Tags: Bioinformatics Software, Computational Science
  • cTAKES by Apache Software Foundation

    Apache cTAKES: clinical Text Analysis and Knowledge Extraction System is an open-source natural language processing system for information extraction from electronic health record clinical...

    Tags: Apache Software Foundation Projects, Electronic Health Record Software, Natural Language Processing Software, Free Healthcare Software, Bioinformatics Software
  • Coot by Paul Emsley,Kevin D. Cowtan

    The program Coot (Crystallographic Object-Oriented Toolkit) is used to display and manipulate atomic models of macromolecules, typically of proteins or nucleic acids, using 3D computer graphics. It...

    Latest version of Coot is 0.8.7 and it was released on 2016-11-08.

    Tags: Crystallography Software, Molecular Modelling Software, Bioinformatics Software, Free Science Software, Free Chemistry Software, Science Software That Uses Gtk, Science Software For Linux
  • Chemistry Development Kit by The CDK Project

    The Chemistry Development Kit (CDK) is computer software, a library in the programming language Java, for chemoinformatics and bioinformatics. It is available for Windows, Linux, Unix, and macOS. It...

    Tags: Bioinformatics Software, Chemistry Software For Linux, Computational Chemistry Software, Free Chemistry Software, Free Software Programmed In Java
  • Biopython

    The Biopython Project is an open-source collection of non-commercial Python tools for computational biology and bioinformatics, created by an international association of developers. It contains...

    Latest version of Biopython is 1.70 and it was released on 2017-07-11.

    Tags: Articles With Example Python Code, Bioinformatics Software, Computational Science, Python Scientific Libraries
  • BioPerl

    BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral role in the Human Genome...

    Latest version of BioPerl is 1.6.924 and it was released on 2014-07-10.

    Tags: Bioinformatics Software, Perl Software, Free Bioinformatics Software
  • BioJava

    BioJava is an open-source software project dedicated to provide Java tools to process biological data. BioJava is a set of library functions written in the programming language Java for manipulating...

    Latest version of BioJava is 4.2.1 and it was released on 2016-01-15.

    Tags: Bioinformatics Software, Java Platform Software
  • Bioclipse by The Bioclipse Project

    The Bioclipse project is a Java-based, open source, visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). It gained scripting functionality in 2009. Like...

    Tags: Bioinformatics Software, Cheminformatics, Java Platform Software, Free Chemistry Software
  • BioBIKE

    BioBike(nee. BioLingua ) is a cloud-based, through-the-web programmable (Paas) symbolic biocomputing and bioinformatics platform that aims to make computational biology, and especially intelligent...

    Tags: Bioinformatics Software, Free Software Projects, Cloud Computing, Cloud Platforms
  • BioloMICS by BioAware SA NV

    BioloMICS is a bioinformatics software application developed by the company BioAware SA NV. It is tool allowing specialized and scientific biological databases to be created to fit the specific...

    Tags: Bioinformatics Software, Biological Databases
  • BALL project by BALL project team

    BALL (pronounced "ball") is computer software consisting of the versatile C++ class framework Biochemical Algorithms Library (BALL), a set of algorithms and data structures for molecular modelling...

    Latest version of BALL project is 1.4.2 and it was released on 2013-01-28.

    Tags: C Libraries, Computational Chemistry Software, Molecular Modelling Software, Bioinformatics Software, Free Bioinformatics Software, Chemistry Software For Linux, Science Software That Uses Qt, Articles With Example C Code
  • ArrayTrack by U.S. Food and Drug Administration

    ArrayTrack is a multi-purpose bioinformatics tool primarily used for microarray data management, analysis, and interpretation. ArrayTrack was developed to support in-house filter array research for...

    Latest version of ArrayTrack is 3.5.0 and it was released on 2010-03-03.

    Tags: Bioinformatics Software, Microarrays
  • BAliPhy by Benjamin Redelings

    BAli-Phy is a free software program for simultaneously estimating a multiple sequence alignment and its phylogenetic tree. BAli-Phy achieves high accuracy in alignment estimation by using...

    Latest version of BAli-Phy is 2.3.8 and it was released on {{release date and age|16|1|30|df=yes}}.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Anduril by University of Helsinki

    Anduril is an open source component-based workflow framework for scientific data analysis developed at the Systems Biology Laboratory, University of Helsinki. Anduril is designed to enable...

    Latest version of Anduril is 1.2.23 and it was released on 2014-06-24.

    Tags: Workflow Technology, Bioinformatics Software
  • Pipeline Pilot by Accelrys

    Pipeline Pilot is the authoring tool for the Accelrys Enterprise Platform. It is a scientific visual and dataflow programming language, used in various scientific domains, such as cheminformatics...

    Latest version of Pipeline Pilot is 8.5 CU3 and it was released on {{Start date|2012|05||df=yes/no}}.

    Tags: Science Software, Enterprise Application Integration, Extract Transform Load Tools, Bioinformatics Software, Computational Chemistry Software, Computer Vision Software, Data Analysis Software, Data Mining And Machine Learning Software, Data Visualization Software, Laboratory Software, Mass Spectrometry Software, Natural Language Processing Software, Numerical Software, Plotting Software, Proprietary Software, Visual Programming Languages, Articles Created Via The Article Wizard
  • XRATE by Ian Holmes (UC Berkeley)

    XRATE is a program for prototyping phylogenetic hidden Markov models and stochastic context-free grammars. It is used to discover patterns of evolutionary conservation in sequence alignments. The...

    Tags: Bioinformatics Software
  • WHAT IF by University of Groningen;,EMBL,Heidelberg;,CMBI,Radboud University Nijmegen;,Radboud University Nijmegen Medical Centre (Radboudumc),WHAT IF Foundation

    WHAT IF is a computer program used in a wide variety of computational (in silico) macromolecular structure research fields. The software provides a flexible environment to display, manipulate, and...

    Latest version of WHAT IF is 6.0 and it was released on {{Start date and age|2016|df=yes}}.

    Tags: Molecular Modelling Software, Bioinformatics Software, Protein Structure
  • ViennaRNA Package by Institut für theoretische Chemie, Währingerstr

    The ViennaRNA Package is a set of standalone programs and libraries used for prediction and analysis of RNA secondary structures. The source code for the package is distributed freely and compiled...

    Latest version of ViennaRNA Package is v2.3.3 and it was released on 2017-01-24.

    Tags: Bioinformatics Software, Bioinformatics Algorithms, Computational Biology
  • Vector NTI by Life Technologies

    Vector NTI is a commercial bioinformatics software package used by many life scientists to work, among other things, with nucleic acids and proteins in silico .]It]allows researchers to, for...

    Latest version of Vector NTI is Vector NTI Express v1.1.1 (Mac & Windows); Vector NTI Advance v11.5.2 (Windows & Mac w/PC Emulation) and it was released on 2012-09-20.

    Tags: Bioinformatics Software
  • TPP by Institute for Systems Biology

    The Trans-Proteomic Pipeline (TPP) is an open-source data analysis software for proteomics developed at the Institute for Systems Biology (ISB) by the Ruedi Aebersold group under the Seattle...

    Latest version of TPP is 5.0.0 and it was released on 2016-10-11.

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Health Sciences
  • taveRNA by Simon Fraser University

    taveRNA is a software suite for RNA/DNA secondary structure. It is developed in the laboratories for computational biology of the School of Computing Science at the Simon Fraser University. The...

    Tags: Bioinformatics Software, Simon Fraser University
  • TimeTree

    TimeTree is a free public database developed by S. Blair Hedges and Sudhir Kumar, now at Temple University, for presenting times of divergence in the tree of life. The basic concept has been to...

    Tags: Bioinformatics Software
  • Staden Package by James Bonfield, et al.

    The Staden Package is computer software, a set of tools for DNA sequence assembly, editing, and sequence analysis. It is open-source software, released under a BSD 3-clause...

    Latest version of Staden Package is 2.0.0b9 and it was released on 2012-01-24.

    Tags: Bioinformatics Software, Computational Science
  • Sirius by San Diego Supercomputer Center

    Sirius is a molecular modelling and analysis system developed at San Diego Supercomputer Center. Sirius is designed to support advanced user requirements that go beyond simple display of small...

    Latest version of Sirius is 1.2 and it was released on 2008-11-18.

    Tags: Molecular Modelling Software, Bioinformatics Software
  • ShelXle by Christian B. Hübschle

    The program ShelXle is a graphical user interface for the structure refinement program SHELXL. ShelXle combines an editor with syntax highlighting for the SHELXL-associated .ins (input) and .res...

    Latest version of ShelXle is 1.0.825 and it was released on 2017-01-28.

    Tags: Crystallography Software, Molecular Modelling Software, Bioinformatics Software, Free Science Software
  • SeqCorator by NoeGen Inc.

    SeqCorator is a bioinformatics software which can run in multiple operating systems (Windows, Mac OS, Unix/Linux) with the same...

    Latest version of SeqCorator is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • Scigress by Fujitsu Limited

    Scigress, stylized SCiGRESS, is a software suite for molecular modelling, computational chemistry, drug design, and materials science, a successor to Computer Aided Chemistry (CAChe)...

    Latest version of Scigress is 2.7(3.2) and it was released on {{Start date and age|2016|05}}.

    Tags: Molecular Modelling Software, Computational Chemistry, Molecular Modelling, Bioinformatics Software, Physics Software, Computational Chemistry Software
  • QuteMol by ISTI,CNR

    QuteMol is an open source, interactive, molecular visualization system. QuteMol utilizes the current capabilities of modern GPUs through OpenGL shaders to offer an array of innovative visual...

    Latest version of QuteMol is 0.4.1 and it was released on 2007-06-06.

    Tags: Molecular Modelling Software, Free Science Software, Chemistry Software For Linux, Free 3d Graphics Software, Free Software Programmed In C, Bioinformatics Software, Software That Uses Wxwidgets
  • ProteoWizard

    ProteoWizard is a set of open-source, cross-platform tools and libraries for proteomics data analyses. It provides a framework for unified mass spectrometry data file access and performs standard...

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Software Using The Apache License
  • PrimerPlex by PREMIER Biosoft

    PrimerPlex designs oligos for standard multiplex PCR assays and for bead-based suspension array systems such as BioPlex-200 and Luminex 100/200 based on xMAP technology. The assays are used for...

    Tags: Bioinformatics Software
  • Primer Premier by Premier Biosoft

    Primer Premier software combines design of primers for various PCR applications under one common platform. The software supports design of degenerate primers on alignments for amplifying related set...

    Tags: Bioinformatics Software
  • Phyloscan by Wadsworth Center, New York State Department of Health

    Phyloscan is a web service for DNA sequence analysis that is free and open to all users (without login requirement). For locating matches to a user-specified sequence motif for a regulatory binding...

    Latest version of Phyloscan is 2.2 and it was released on 2010-01-28.

    Tags: Bioinformatics, Bioinformatics Software, Computational Science
  • Phylogenetic Analysis Using Parsimony and other methods

    PAUP* (Phylogenetic Analysis Using Parsimony *and other methods) is a computational phylogenetics program for inferring evolutionary trees (phylogenies), written by David L. Swofford. Originally, as...

    Tags: Computational Phylogenetics, Bioinformatics Software
  • NoePrimer by NoeGen Inc.

    NoePrimer is a bioinformatics software which can run in multiple operating systems (windows, Mac OS, Unix/Linux) with the same...

    Latest version of NoePrimer is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • Newbler by 454 Life Sciences

    Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life...

    Latest version of Newbler is v2.7 and it was released on 2012-02-28.

    Tags: Bioinformatics Software, Computational Science
  • Metascape Bioinformatics Resources by Sanford Burnham, UCSD, GNF

    Metascape is a free gene annotation and analysis resource that helps biologists make sense of one or multiple gene lists. Metascape provides automated meta-analysis tools to understand either common...

    Latest version of Metascape Bioinformatics Resources is 3.0 and it was released on 2016-11-02.

    Tags: Biological Databases, Bioinformatics Software, Laboratory Software, Systems Biology
  • Mesquite A modular system for evolutionary analysis

    Mesquite is a software package primarily designed for phylogenetic analyses. It was developed as a successor to MacClade, when the authors recognized that implementing a modular architecture in...

    Latest version of Mesquite: A modular system for evolutionary analysis is 3.2 and it was released on 2017-01-01.

    Tags: Computational Phylogenetics, Bioinformatics Software, Phylogenetics
  • Mega2 by Daniel E. Weeks, Robert V. Baron, Justin R. Stickel.

    Mega2 (short for manipulation environment for genetic analysis) allows the applied statistical geneticist to convert one's data from several input formats to a large number output formats suitable...

    Latest version of Mega2 is 4.9.2 and it was released on 2017-06-13.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • MAVID by Nicolas Bray (UC Berkeley), Lior Pachter (UC Berkeley)

    MAVID is a multiple sequence alignment program suitable for the alignment of large numbers of DNA sequences. The sequences can be small mitochondrial genomes or large genomic regions up to megabases...

    Tags: Bioinformatics Software, Computational Phylogenetics
  • LabKey Server by LabKey

    LabKey Server is free, open source software available for scientists to integrate, analyze, and share biomedical research data. The platform provides a secure data repository that allows web-based...

    Latest version of LabKey Server is 17.2 and it was released on 2017-07-14.

    Tags: Bioinformatics Software, Free Bioinformatics Software, Free Science Software, Mass Spectrometry Software, Proteomics, Science Software For Windows, Science Software For Linux, Science Software For Macos
  • Jalview by Andrew Waterhouse, James Procter, David Martin and Geoffrey Barton at the University of Dundee.,Original version by Michele Clamp, James Cuff, Stephen Searle, Geoffrey Barton.

    Jalview is a piece of bioinformatics software that is used to look at and edit multiple sequence alignments. It is written in the Java programming language. The programme was originally written by...

    Latest version of Jalview is 2.10.1 and it was released on 2016-11-29.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Integrated Genome Browser

    Integrated Genome Browser (IGB) (pronounced Ig-Bee) is an open source genome browser, a visualization tool used to observe biologically-interesting patterns in genomic data sets, including sequence...

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • IMOD by David Mastronarde et al. at the Boulder Laboratory for 3-D Electron Microscopy of Cells

    IMOD is an open-source, cross-platform suite of modeling, display and image processing programs used for 3D reconstruction and modeling of microscopy images with a special emphasis on electron...

    Latest version of IMOD is 4.3.7 and it was released on February 23, 2012.

    Tags: Bioinformatics Software, Science Software, Freeware
  • HyPhy by Sergei L Kosakovsky Pond, Art FY Poon, Steven Weaver, N. Lance Hepler, Martin Smith.

    HYPHY is a free multiplatform (Mac, Windows and UNIX) Computational phylogenetics software package intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to...

    Latest version of HyPhy is June, 2012 and it was released on 2012-06-21.

    Tags: Computational Phylogenetics, Bioinformatics Software
  • GESS by NCSS, LLC

    GESS is a computer program for analyzing gene expression data obtained from microarrays. NCSS LLC is the name of the company that produces GESS. NCSS LLC also produces PASS (Power Analysis and...

    Latest version of GESS is GESS 2006 and it was released on May, 2006.

    Tags: Bioinformatics Software, Microarrays
  • GENtle by Magnus Manske

    GENtle is a free software under GPL...

    Latest version of GENtle is 1.9.0 and it was released on 2006-04-07.

    Tags: Bioinformatics Software, Free Science Software, Science Software For Linux, Software That Uses Wxwidgets
  • GenomeSpace by Broad Institute

    GenomeSpace is an environment for genomics software tools and applications. It helps users manage their analysis workflows involving multiple diverse tools, including web applications and desktop...

    Latest version of GenomeSpace is beta 5.0 and it was released on {{Start date and age|2012|04}}.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • GenGIS by Donovan Parks, Mike Porter, Timothy Mankowski, Suwen Wang, Sylvia Churcher, Alex Keddy, Christian Blouin, Jacqueline Whalley, Stephen Brooks, Rob Beiko

    GenGIS merges geographic, ecological and phylogenetic biodiversity data in a single interactive visualization and analysis environment. A key feature of GenGIS is the testing of geographic axes that...

    Latest version of GenGIS is 2.4.1 and it was released on 2015.

    Tags: Bioinformatics Software, Biogeography, Genetics, Molecular Biology
  • GenePattern by Broad Institute

    GenePattern is a freely available computational biology open-source software package developed at the Broad Institute of MIT and Harvard for the analysis of genomic data. Designed to enable...

    Latest version of GenePattern is 3.9.8 and it was released on June 2016.

    Tags: Bioinformatics Software, Dna Sequencing, Gene Expression
  • Gene Designer by DNA2.0

    Gene Designer is a computer software package for bioinformatics. It is used by molecular biologists from academia, government, and the pharmaceutical, chemical, agricultural, and biotechnology...

    Latest version of Gene Designer is 2.01.191 and it was released on 2015-10-09.

    Tags: Bioinformatics, Bioinformatics Software
  • Foldit by University of Washington, Center for Game Science, Department of Biochemistry

    Foldit is an online puzzle video game about protein folding. It is part of an experimental research project developed by the University of Washington, Center for Game Science, in collaboration with...

    Tags: 2008 Video Games, Linux Games, Macos Games, Windows Games, Puzzle Video Games, Humanbased Computation Games, Luascripted Video Games, Bioinformatics Software, Computational Biology, Molecular Biology, Protein Folding, Protein Structure, Gamification
  • FlyExpress

    FlyExpress is a free database that collects the expression patterns of Drosophila melanogaster in embryogenesis via a series of images submitted from BDGP, Fly-FISH and publications from other...

    Tags: Insect Developmental Biology, Model Organism Databases, Bioinformatics Software
  • FASTA by Pearson W.R.

    FASTA is a DNA and protein sequence alignment software package first described (as FASTP) by David J. Lipman and William R. Pearson in 1985. Its legacy is the FASTA format which is now ubiquitous in...

    Tags: Computational Phylogenetics, Bioinformatics Software
  • esyN

    esyN (Easy Networks) is an open source bioinformatics web-tool for visualizing, building and analysing molecular interaction networks. esyN is based on cytoscape.js and its aim is to make it easy...

    Latest version of esyN (Easy Networks) is 2.1 and it was released on 2016-01-17.

    Tags: Bioinformatics Software, Proteomics, Metabolomic Databases, Free Software
  • eMovie by Israel Structural Proteomics Center

    eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of...

    Tags: Molecular Modelling Software, Data Visualization Software, Bioinformatics Software
  • DNADynamo by BlueTractorSoftware Ltd

    DNADynamo is a commercial DNA sequence analysis software package produced by Blue Tractor Software Ltd that runs on Microsoft Windows, Mac OS X and Linux It is used by molecular biologists to...

    Tags: Bioinformatics Software, Computational Science
  • DECIPHER by Erik Wright

    Decipher, stylized as DECIPHER, is a software toolset that can be used to decipher and manage biological sequences efficiently using the programming language R. Some functions of the program are...

    Latest version of DECIPHER is 2.2.0 and it was released on {{Start date and age|2016}}.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Cytoscape

    Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression profiles and other state data. Additional features...

    Latest version of Cytoscape is 3.5.1 and it was released on 2017-04-26.

    Tags: Bioinformatics Software, Systems Biology, Mathematical And Theoretical Biology, Graph Drawing Software, Crossplatform Software, Java Platform Software
  • CLUSTAL by {{Plainlist| * Des Higgins * Fabian Sievers * David Dineen * Andreas Wilm (all at the Conway Institute, UCD)}}

    Clustal is a series of widely used computer programs used in Bioinformatics for multiple sequence...

    Latest version of CLUSTAL is 1.2.2 and it was released on 2016-07-01.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • CheShift2

    CheShift-2 (pronounced /tʃeʃɪft/) is an application created to compute 13Cα and 13Cβ protein chemical shifts and to validate protein structures. It is based on quantum mechanics computations of 13Cα...

    Latest version of CheShift-2 is 3.0 and it was released on 2013-09-01.

    Tags: Bioinformatics Software
  • Budapest Reference Connectome by Balázs Szalkai, Csaba Kerepesi, Bálint Varga, Vince Grolmusz

    The Budapest Reference Connectome server computes the frequently appearing anatomical brain connections of 418 healthy subjects. It has been prepared from diffusion MRI datasets of the Human...

    Tags: Computational Neuroscience, Neuroscience, Neuroinformatics, Bioinformatics, Bioinformatics Software, Free Bioinformatics Software
  • BLAT by Jim Kent,UCSC

    BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the...

    Tags: Bioinformatics Software, Laboratory Software
  • Biskit by Raik Grünberg, Johan Leckner, and others

    Biskit is an open source software package written in Python. The package facilitates research in Structural bioinformatics and molecular modelling. Biskit falls into two parts: * an Object-oriented...

    Tags: Bioinformatics Software, Molecular Modelling, Physics Software, Computational Chemistry Software, Free Science Software, Free Software Programmed In Python, Molecular Dynamics
  • BioPHP

    BioPHP is a collection of open source PHP code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other bioinformatics tools. BioRuby is released under the GNU GPL...

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • BioRuby

    BioRuby is a collection of Open Source Ruby code, comprising classes for computation molecular biology and bioinformatics. It contains classes for DNA and protein sequence analysis, sequence...

    Latest version of BioRuby is 1.5.0 and it was released on 2015-07-01.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • BioMart

    BioMart is a community-driven project to provide a single point of access to distributed research data. The BioMart project contributes open source software and data services to the international...

    Tags: Bioinformatics Software, Free Software Projects, Biological Databases, Data Warehousing Products
  • BioNumerics by Applied Maths N.V.

    BioNumerics is a suite of bioinformatics software applications developed by the company Applied Maths...

    Tags: Bioinformatics Software
  • Bioinformatic Harvester by Urban Liebel, Björn Kindler

    The Bioinformatic Harvester was a bioinformatic meta search engine created by the European Molecular Biology Laboratory and subsequently hosted and further developed by KIT Karlsruhe Institute of...

    Latest version of Bioinformatic Harvester is 4 and it was released on 2011-05-24.

    Tags: Bioinformatics Software, Biological Databases, Internet Search Engines, Biology Websites
  • Beacon Designer by Premier Biosoft

    Beacon Designer designs highly specific and efficient primers and probes for real time PCR (polymerase chain reaction) assays. It is compatible to work on Windows as well as on Mac. The software...

    Latest version of Beacon Designer is 7.9 and it was released on [wiki=58c032d8e88b253d5577448141ed2384]17 June 2010[/wiki].

    Tags: Bioinformatics Software
  • Archaeopteryx by Christian M. Zmasek

    Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees. This type of program can be used for a variety of analyses of...

    Latest version of Archaeopteryx is 0.972+ beta 9M and it was released on 2012.08.08.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • AMPHORA by Martin Wu, Jonathan Eisen et al.

    AMPHORA ("AutoMated Phylogenomic infeRence Application") is an open-source bioinformatics workflow. AMPHORA2 uses 31 bacterial and 104 archaeal phylogenetic marker genes for inferring phylogenetic...

    Latest version of AMPHORA is 2.0 and it was released on 2013.

    Tags: Metagenomics Software, Bioinformatics Software, Free Bioinformatics Software, Computational Phylogenetics, Free Science Software
  • Abalone by Agile Molecule

    Abalone is a general purpose molecular dynamics and molecular graphics program for simulations of bio-molecules in a periodic boundary conditions in explicit (flexible SPC water model) or in...

    Latest version of Abalone is 1.9.0 and it was released on 2016-05-17.

    Tags: Science Software, Molecular Modelling Software, Molecular Dynamics Software, Monte Carlo Software, Bioinformatics Software, Computational Chemistry Software
  • AMAP by Ariel Schwartz (UC Berkeley), Lior Pachter (UC Berkeley)

    AMAP is a multiple sequence alignment program based on a new approach to multiple alignment called sequence annealing. This approach consists of building up the multiple alignment one match at a...

    Tags: Bioinformatics Software
  • AlleleID by PREMIER Biosoft

    AlleleID designs oligos for strain differentiation and taxa specific assays. This aids in bacterial identification, pathogen detection and species identification. The software is designed to run on...

    Latest version of AlleleID is 7.80 and it was released on 29 June 2013.

    Tags: Bioinformatics Software
  • Stemloc by Ian Holmes (UC Berkeley)

    Stemloc is a program for pairwise RNA structural alignment based on probabilistic models of RNA structure known as Pair stochastic context-free grammars. Stemloc implements constrained versions of...

    Tags: Bioinformatics Software
  • SplitsTree by Daniel Huson and David Bryant

    SplitsTree is a popular program for inferring phylogenetic trees or, more generally, phylogenetic networks from various types of data such as a sequence alignment, a distance matrix or a set of...

    Latest version of SplitsTree is 4.14.4 and it was released on 2008.

    Tags: Bioinformatics Software, Computational Phylogenetics, Genetics, Molecular Biology
  • RAPTOR by Bioinformatics Solutions Inc.

    RAPTOR is protein threading software used for protein structure prediction. It has been replaced by RaptorX, which is much more accurate than...

    Latest version of RAPTOR is 4.2 and it was released on {{Start date and age|2008|11}}.

    Tags: Bioinformatics Software, Molecular Modelling Software
  • NoeClone by NoeGen Inc.

    NoeClone is a bioinformatics software which can run in multiple operating systems (Windows, Mac OS, Unix/Linux) with the same...

    Latest version of NoeClone is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • MAFFT by Kazutaka Katoh

    In bioinformatics, MAFFT is a multiple sequence alignment program for amino acid or nucleotide sequences. The software is named after the acronym Multiple Alignment using Fast Fourier Transform...

    Latest version of MAFFT is 7.299 and it was released on 2016-06-28.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Handel by Ian Holmes (UC Berkeley)

    Handel is a suite of programs for multiple sequence alignment. Since it is based on a model of DNA sequence evolution that explicitly incorporates insertion and deletion events, it effectively...

    Tags: Bioinformatics Software
  • Giant Virus Finder by Csaba Kerepesi

    The Giant Virus Finder is a free bioinformatics software for finding giant viruses in...

    Tags: Metagenomics Software, Bioinformatics Software, Free Bioinformatics Software, Free Science Software
  • GENSCAN by Christopher Burge

    In bioinformatics GENSCAN is a program to identify complete gene structures in genomic DNA. It is a GHMM-based program that can be used to predict the location of genes and their exon-intron...

    Tags: Bioinformatics Software
  • Dendroscope by Daniel Huson et al.

    Dendroscope is an interactive computer software program written in Java for viewing Phylogenetic trees. This program is designed to view trees of all sizes and is very useful for creating figures....

    Latest version of Dendroscope is 3.2.10 and it was released on 2013.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Apache Taverna by Apache Software Foundation (myGrid for 2.x)

    Apache Taverna is an open source software tool for designing and executing workflows, initially created by the myGrid project under the name Taverna Workbench, now a project under the Apache...

    Latest version of Apache Taverna is 2.5 and it was released on 2014-04-16.

    Tags: Workflow Technology, Bioinformatics Software, School Of Computer Science University Of Manchester, Workflow Software, Apache Software Foundation, Apache Software Foundation Projects, Software Using The Apache License
  • BLAST by Altschul SF,Gish W,Miller W,Myers EW,Lipman DJ,NCBI

    In bioinformatics, BLAST for Basic Local Alignment Search Tool is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of proteins or the nucleotides...

    Latest version of BLAST is 2.6.0+ and it was released on 2016-12-07.

    Tags: Bioinformatics Algorithms, Computational Phylogenetics, Bioinformatics Software, Laboratory Software, Publicdomain Software
  • HMMER by Sean Eddy, Travis Wheeler, HMMER development team

    HMMER is a free and commonly used software package for sequence analysis written by Sean Eddy. Its general usage is to identify homologous protein or nucleotide sequences, and to perform sequence...

    Latest version of HMMER is 3.0 and it was released on 2010-03-28.

    Tags: Bioinformatics Software, Free Science Software, Free Software Programmed In C, Computational Science
  • MorphoBank by The MorphoBank Project

    MorphoBank is a web application for collaborative evolutionary research, specifically phylogenetic systematics or cladistics, on the phenotype. Historically, scientists conducting research on...

    Tags: Web Applications, Bioinformatics Software
  • OpenMS

    OpenMS is an open-source project for data analysis and processing in protein mass spectrometry and is released under the 3-clause BSD licence. It supports most common operating systems including...

    Latest version of OpenMS is 2.1.0 and it was released on 2016-11-22.

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Software Using The Bsd License
  • UGENE by Unipro

    UGENE is computer software for bioinformatics. It works on desktop computer operating systems such as Windows, macOS, or Linux. It is released as free and open-source software, under a GNU General...

    Latest version of UGENE is 1.27 and it was released on 2017-08-23.

    Tags: Bioinformatics Software, Free Science Software, Free Software Programmed In C, Computational Science
  • BioJS

    BioJS is an open source project for bioinformatics data on the web. Its goal is to develop an open-source library of JavaScript components to visualise biological data. BioJS develops and maintains...

    Tags: Free Bioinformatics Software
  • YASS

    YASS is a free software, pairwise sequence alignment software for nucleotide sequences, that is, it can search for similarities between DNA or RNA sequences. YASS accepts nucleotide sequences in...

    Tags: Free Bioinformatics Software, Computationalbiology
  • KNIME The Open Analytics Platform by KNIME.com AG

    KNIME , the Konstanz Information Miner, is an open source data analytics, reporting and integration platform. KNIME integrates various components for machine learning and data mining through its...

    Latest version of KNIME - The Open Analytics Platform is 3.4.1 and it was released on Sept. 7, 2017.

    Tags: Free Software Programmed In Java, Free Software Projects, Free Bioinformatics Software, Data Mining And Machine Learning Software, Image Processing Software
  • PathVisio

    PathVisio is a free open-source pathway analysis and drawing software. It allows drawing, editing, and analyzing biological pathways. Visualization of ones experimental data on the pathways for...

    Latest version of PathVisio is 3.2.4 and it was released on November 24, 2016.

    Tags: Free Bioinformatics Software, Systems Biology, Data Visualization Software, Mathematical And Theoretical Biology, Crossplatform Software, Java Platform Software
  • PSIPRED by University College London, Bioinformatics Group

    PSI-blast based secondary structure PREDiction (PSIPRED) is a method used to investigate protein structure. It uses artificial neural network machine learning methods in its algorithm. It is a...

    Latest version of PSIPRED is 4.01 and it was released on 2016-10-02.

    Tags: Free Bioinformatics Software, Neural Network Software
  • RStudio by RStudio, Inc.

    RStudio is a free and open-source integrated development environment (IDE) for R, a programming language for statistical computing and graphics. RStudio was founded by JJ Allaire, creator of the...

    Latest version of RStudio is 1.0.153 and it was released on 2017-07-20.

    Tags: Free R Software, R, Science Software For Linux, Software Using The Gnu Agpl License
  • Rhea by Ilias Lagkouvardos, Sandra Fischer, Neeraj Kumar, Thomas Clavel

    Rhea is a bioinformatic pipeline written in R language for the analysis of microbial profiles. It was released during the end of 2016 and it is publicly available through a GitHub...

    Tags: R, Free R Software, Software Using The Mit License, Science Software For Linux
  • Rattle GUI by Dr. Graham Williams

    Rattle GUI is a free and open source software (GNU GPL v2) package providing a graphical user interface (GUI) for data mining using the R statistical programming language. Rattle is used in a...

    Latest version of Rattle GUI is 2.6.25 and it was released on 2013-01-22.

    Tags: Free R Software, Data Mining And Machine Learning Software
  • Statistical Lab by Free University of Berlin

    The computer program Statistical Lab (Statistiklabor) is an explorative and interactive toolbox for statistical analysis and visualization of data. It supports educational applications of statistics...

    Latest version of Statistical Lab is 3.81 and it was released on 2 May 2011.

    Tags: Free R Software, Statistical Software, Windowsonly Freeware
  • RKWard by RKWard community

    RKWard is a transparent front-end to the R programming language, a scripting-language with a strong focus on statistics functions. RKWard tries to combine the power of the R language with the ease...

    Latest version of RKWard is 0.6.4 and it was released on 2015-12-21.

    Tags: Free R Software, Free Software Programmed In C, Free Statistical Software, Kde Applications, Php Software
  • Emacs Speaks Statistics

    Emacs Speaks Statistics (ESS) is an Emacs package of modes for statistical languages. It adds two types of modes to emacs: # ESS modes for editing statistical languages like R and SAS; and #...

    Tags: Emacs Modes, Free R Software, Free Statistical Software
  • lumi software

    lumi is a free, open source and open development software project for the analysis and comprehension of Illumina expression and methylation microarray data. The project was started in the summer of...

    Latest version of lumi software is 2.0 and it was released on March 4, 2007.

    Tags: Free Science Software, Free R Software, Microarrays
  • KH Coder by Koichi Higuchi

    KH Coder is an open source software for computer assisted qualitative data analysis, particularly quantitative content analysis and text mining. It can be also used for computational linguistics. It...

    Latest version of KH Coder is 2.00f and it was released on Dec 2015.

    Tags: Free Qda Software, Free Science Software, Crossplatform Free Software, Free R Software, Qda Software, Qualitative Research, Science Software For Macos, Science Software For Linux
  • ggplot2

    ggplot2 is a data visualization package for the statistical programming language R. Created by Hadley Wickham in 2005, ggplot2 is an implementation of Leland Wilkinson's Grammar of Graphics-a...

    Latest version of ggplot2 is 2.2.1 and it was released on 2016-12-30.

    Tags: Crossplatform Free Software, Free Plotting Software, Free R Software, Visualization
  • RQDA by Huang Ronggui

    RQDA is an R package for computer assisted qualitative data analysis or CAQDAS. It is installable from, and runs within, the R statistical software, but has a separate window running a graphical...

    Latest version of RQDA is 0.3-0 and it was released on Jul 2017.

    Tags: Free Qda Software, Free Science Software, Crossplatform Free Software, Free R Software, Qda Software, Qualitative Research, Science Software For Macos, Science Software For Linux
  • Quantitative Discourse Analysis Package by Bryan Goodrich,Dason Kurkiewicz,Tyler Rinker

    Quantitative Discourse Analysis Package (qdap) is an R package for computer assisted qualitative data analysis, particularly quantitative discourse analysis, transcript analysis and natural language...

    Latest version of Quantitative Discourse Analysis Package (qdap) is 2.2.8 and it was released on Sept 2017.

    Tags: Free Qda Software, Free Science Software, Crossplatform Free Software, Free R Software, Qda Software, Qualitative Research, Science Software For Macos, Science Software For Linux
  • Rmetrics

    Rmetrics is a free, open source and open development software project for teaching computational finance. Rmetrics is based primarily on the statistical R programming language, but does contain...

    Tags: Financial Software, Free R Software, Free Science Software, Science Software For Linux, Science Software For Macos, Science Software For Windows
  • knitr

    knitr is an engine for dynamic report generation with R. It is a package in the statistical programming language R that enables integration of R code into LaTeX, LyX, HTML, Markdown, AsciiDoc, and...

    Latest version of knitr is 1.16 and it was released on 2017-05-18.

    Tags: Free R Software, Free Statistical Software, Free Tex Software, Literate Programming, R
  • TomoPy by Community project

    TomoPy is an open-sourced Python toolbox to perform tomographic data processing and image reconstruction tasks at the Advanced Photon...

    Tags: Data Processing, Free Science Software, Image Processing Software, Python Scientific Libraries, Tomography
  • spaCy by ,

    spaCy is an open-source software library for advanced Natural Language Processing, written in the programming languages Python and Cython. It offers the fastest syntactic parser in the world. The...

    Latest version of spaCy is 1.9.0 and it was released on 2017-07-22.

    Tags: Free Science Software, Natural Language Processing Toolkits, Python Libraries
  • Physics Analysis Workstation

    The Physics Analysis Workstation (PAW) is an interactive, scriptable computer software tool for data analysis and graphical presentation in High Energy Physics (HEP). The development of this...

    Latest version of Physics Analysis Workstation is 2.13/08 and it was released on 2002-09-16.

    Tags: Free Science Software, Free Software Programmed In Fortran, Physics Software
  • SCOOP by Yannick Hold and Olivier Gagnon

    SCOOP (Scalable Concurrent Operations in Python) is a Python software module for distributing concurrent tasks on various environments, from heterogeneous grids of workstations to...

    Latest version of SCOOP is 0.7.1 and it was released on 2014-03-17.

    Tags: Distributed Computing, Free Science Software, Python Scientific Libraries, Python Software
  • Ptolemy II by University of California, Berkeley

    The Ptolemy Project is an ongoing project aimed at modeling, simulating, and designing concurrent, real-time, embedded systems. The focus of the Ptolemy Project is on assembling concurrent...

    Latest version of Ptolemy II is 10.0.1 and it was released on 2014-12-17.

    Tags: Free Science Software, Software Projects, Systems Engineering, Visual Programming Languages
  • NEST by The NEST Initiative

    NEST is a simulation software for spiking neural network models, including large-scale neuronal networks. NEST was initially developed by Markus Diesmann and Marc-Oliver Gewaltig and is now...

    Latest version of NEST (Neural Simulation Tool) is 2.12.0 and it was released on 2017-03-01.

    Tags: Computational Biology, Computational Neuroscience, Simulation Software, Scientific Simulation Software, Science Software, Free Science Software
  • Nanoscale Molecular Dynamics by University of Illinois at Urbana-Champaign: Theoretical and Computational Biophysics Group (TCB), Parallel Programming Laboratory (PPL)

    Nanoscale Molecular Dynamics (NAMD, formerly Not Another Molecular Dynamics Program) is computer software for molecular dynamics simulation, written using the Charm++ parallel programming model. It...

    Latest version of Nanoscale Molecular Dynamics is 2.11 and it was released on 2015-12-22.

    Tags: Molecular Dynamics Software, Free Science Software
  • Madagascar

    Madagascar is a software package for multidimensional data analysis and reproducible computational experiments. Its mission is to provide * a convenient and powerful environment * a convenient...

    Latest version of Madagascar is 2.0 and it was released on 2017-07-08.

    Tags: Free Science Software
  • KLettres by KDE

    KLettres is an educational program that helps the user learn the alphabet as well as pronunciation. It is free and open source software, licensed under the terms of the GPL. The software is part of...

    Tags: Free Science Software, Free Software Programmed In C, Educational Software For Macos, Educational Software For Windows, Educational Software For Linux
  • KAlgebra by KDE

    KAlgebra is a mathematical graph calculator included in the KDE education package. While it is based on the MathML content markup language, knowledge of MathML is not required for use. The...

    Tags: Free Science Software, Free Software Programmed In C, Science Software For Linux, Science Software For Macos, Science Software For Windows, Science Software That Uses Qt
  • Kanagram by KDE

    Kanagram is an educational game that creates anagrams, re-assortment of letters in a word, and the user needs to guess what the original word is. It is licensed under the GNU Public License v2, and...

    Tags: Free Science Software, Free Software Programmed In C, Educational Software For Macos, Educational Software For Windows, Educational Software For Linux
  • GumTree by ANSTO

    GumTree is an open-source scientific workbench for performing scientific experiments under a distributed network environment. It provides a multi-platform graphical user interface for instrument...

    Latest version of GumTree is 1.6.3 and it was released on 2011-08-26.

    Tags: Free Science Software
  • Gensim by ,

    Gensim is a robust open-source vector space modeling and topic modeling toolkit implemented in Python. It uses NumPy, SciPy and optionally Cython for performance. Gensim is specifically designed to...

    Latest version of Gensim is 2.3.0 and it was released on 2017-07-25.

    Tags: Free Science Software, Natural Language Processing Toolkits, Python Libraries
  • FreeFem by Université Pierre et Marie Curie and Laboratoire Jacques-Louis Lions

    FreeFem++ is a programming language and a software focused on solving partial differential equations using the finite element method. FreeFem++ is written in C++ and developed and maintained by...

    Latest version of FreeFem++ is 3.50-1 and it was released on 2017-01-10.

    Tags: Computational Physics, Free Science Software, Computeraided Engineering Software For Linux, Engineering Software That Uses Qt, Numerical Analysis Software For Linux, Finite Element Software For Linux
  • Fluentd by Treasure Data

    Fluentd is a cross platform open source data collection software project originally developed at Treasure Data. It is written primarily in the Ruby programming...

    Tags: Big Data Companies, Data Warehousing Products, Data Security, Computer Security Companies, Freeware, Free Software, System Administration, Data Mining And Machine Learning Software, Free Science Software, Free Software Programmed In Java, Free Data Analysis Software, Free Artificial Intelligence Applications
  • EAS3

    EAS3 (EAS = Ein-Ausgabe-System) is a software toolkit for reading and writing structured binary data with geometry information and for postprocessing of these data. It is meant to exchange...

    Latest version of EAS3 is 1.6.7 and it was released on 2009-04-14.

    Tags: Free Science Software, Free Software Programmed In C, Free Software Programmed In Fortran, Computer File Formats, Software Using The Mit License
  • Caffe by Berkeley Vision and Learning Center

    Caffe is a deep learning framework, originally developed at UC Berkeley. It is open source, under a BSD license. It is written in C++, with a Python...

    Latest version of Caffe is 1.0 and it was released on 2017-04-18.

    Tags: Applied Machine Learning, Artificial Neural Networks, Data Mining And Machine Learning Software, Deep Learning, Free Science Software, Free Statistical Software, Image Processing, Information Technology Companies Of The United States, Machine Learning
  • Brian by Romain Brette, Dan Goodman, Marcel Stimberg

    Brian is an open source Python package for developing simulations of networks of spiking...

    Latest version of Brian is 2.0 and it was released on 2016-09-16.

    Tags: Computational Neuroscience, Scientific Simulation Software, Free Science Software, Neuroscience Software
  • Ascalaph Designer by Agile Molecule

    Ascalaph Designer is a computer program for general purpose molecular modelling for molecular design and simulations. It provides a graphical environment for the common programs of quantum and...

    Latest version of Ascalaph Designer is 1.8.94 and it was released on 2015-12-03.

    Tags: Molecular Modelling Software, Molecular Dynamics Software, Free Science Software
  • ANUGA Hydro by Geoscience Australia and the Australian National University

    ANUGA Hydro is a free and open source software tool for hydrodynamic modelling, suitable for predicting the consequences of hydrological disasters such as riverine flooding, storm surges and...

    Latest version of ANUGA Hydro is v2.0 and it was released on 2015-05-04.

    Tags: Integrated Hydrologic Modelling, Free Software Programmed In Python, Free Science Software, Free Software Distributions
  • AFNI by {{dead link|date=October 2016 |bot=InternetArchiveBot |fix-attempted=yes }}

    Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying functional MRI data-a technique for mapping human brain activity. AFNI is an agglomeration of...

    Tags: Medical Imaging, Neuroimaging Software, Free Science Software
  • Spyder

    Spyder (formerly Pydee) is an open source cross-platform integrated development environment (IDE) for scientific programming in the Python language. Spyder integrates NumPy, SciPy, Matplotlib and...

    Latest version of Spyder is 3.2.3 and it was released on 2017-09-11.

    Tags: Free Integrated Development Environments, Free Integrated Development Environments For Python, Python Development Tools, Free Mathematics Software, Free Science Software, Python Software, Software Using The Mit License
  • Shogun machine learning toolbox by Soeren Sonnenburg,Sergey Lisitsyn,Heiko Strathmann,Fernando Iglesias,Viktor Gal

    Shogun is a free, open source machine learning software library written in C++. It offers numerous algorithms and data structures for machine learning problems. It offers interfaces for Octave,...

    Latest version of Shogun machine learning toolbox is 6.0.0 and it was released on 2017-04-25.

    Tags: C Libraries, Free Software Programmed In C, Data Mining And Machine Learning Software, Free Statistical Software, Free Computer Libraries, Free Mathematics Software, Free Science Software
  • OsiriX

    OsiriX is an image processing application for Mac dedicated to DICOM images (".dcm" / ".DCM" extension) produced by equipment (MRI, CT, PET, PET-CT, ...). Osirix is complementary to existing...

    Latest version of OsiriX is 7 and it was released on 2015-12-07.

    Tags: Free Bioimaging Software, Free Dicom Software, Free Graphics Software, Free Science Software, Imaging, Macosonly Free Software
  • Weka by University of Waikato

    Waikato Environment for Knowledge Analysis (Weka) is a suite of machine learning software written in Java, developed at the University of Waikato, New Zealand. It is free software licensed under the...

    Latest version of Weka is 3.8.1 (stable) and it was released on 2016-04-14.

    Tags: Data Mining And Machine Learning Software, Free Science Software, Free Software Programmed In Java, Free Data Analysis Software, Free Artificial Intelligence Applications, Software Using The Gpl License
  • Waffles by Michael S. Gashler

    Waffles is a collection of command-line tools for performing machine learning operations developed at Brigham Young University. These tools are written in C++, and are available under the GNU Lesser...

    Tags: Data Mining And Machine Learning Software, Free Science Software, Software Optimization, Free Data Analysis Software
  • Tanagra by Lumière University Lyon 2

    Tanagra is a free suite of machine learning software for research and academic purposes developed by Ricco Rakotomalala at the Lumière University Lyon 2, France. Tanagra supports several standard...

    Latest version of Tanagra is 1.4.50 and it was released on 2013/12/18.

    Tags: Data Mining And Machine Learning Software, Free Science Software, Software Programmed In Java, Free Data Analysis Software
  • STEM by IBM, , Eclipse Foundation

    The Spatiotemporal Epidemiological Modeler (STEM) is a free software available through the Eclipse Foundation. Originally developed by IBM Research, STEM is a framework and development tool designed...

    Tags: Free Science Software, Free Healthcare Software, Epidemiology, Public Health And Biosurveillance Software, Ibm Software
  • SimPy by Ontje Lünsdorf, Stefan Scherfke

    SimPy is a process-based discrete-event simulation framework based on standard Python. Its event dispatcher is based on Python’s generators and can also be used for asynchronous networking or to...

    Latest version of SimPy is 3.0.10 and it was released on 2016-08-26.

    Tags: Crossplatform Software, Free Science Software, Python Libraries, Simulation Programming Languages, Articles With Example Python Code
  • Gnaural

    Gnaural is brainwave entrainment software for Microsoft Windows, Mac OS X, and Linux licensed under the GNU General Public License. Gnaural is free software for creating binaural beats intended to...

    Tags: Free Audio Software, Free Science Software, Free Software Programmed In C, Free Healthcare Software
  • EXMARaLDA by Thomas Schmidt and Kai Wörner, from the Special Research Centre on Multilingualism - University of Hamburg.

    EXMARaLDA (Extensible Markup Language for Discourse Annotation) is a set of free software tools for creating, managing and analyzing spoken language corpora. It consists of a transcription tool...

    Tags: Free Science Software, Phonetics, Phonology, Free Audio Software, Linguistic Research Software
  • SIMJS by Maneesh Varshney

    SIM.JS is an event-based discrete-event simulation library based on standard JavaScript. The library has been written in order to enable simulation within standard browsers by utilizing web...

    Latest version of SIM.JS is 0.26 and it was released on 2012-01-16.

    Tags: Crossplatform Software, Free Science Software, Simulation Programming Languages
  • SciPy by Community library project

    SciPy (pronounced "Sigh Pie") is an open source Python library used for scientific computing and technical computing. SciPy contains modules for optimization, linear algebra, integration,...

    Latest version of SciPy is 0.19.1 and it was released on 2017-06-22.

    Tags: Crossplatform Software, Free Science Software, Numerical Analysis Software For Linux, Numerical Analysis Software For Macos, Numerical Analysis Software For Windows, Numerical Programming Languages, Python Scientific Libraries
  • Seismic Unix

    Seismic Unix is an open source seismic utilities package supported by the Center for Wave Phenomena (CWP) at the Colorado School of Mines...

    Latest version of Seismic Unix is SU 43R1 and it was released on 2012-01-03.

    Tags: Seismology, Free Science Software, Colorado School Of Mines
  • OpenFOAM by CFD Direct

    OpenFOAM (for "Open source Field Operation And Manipulation") is a C++ toolbox for the development of customized numerical solvers, and pre-/post-processing utilities for the solution of continuum...

    Latest version of OpenFOAM is 5.0 and it was released on 2017-07-26.

    Tags: 2004 Software, C, C Software, Computational Fluid Dynamics, Computeraided Engineering Software For Linux, Continuum Mechanics, Fluid Dynamics, Free Science Software, Free Software, Free Software Programmed In C, Linuxonly Software, Open Source Computer Aided Engineering Applications, Scientific Simulation Software
  • OpenLB

    OpenLB is an object-oriented implementation of the Lattice Boltzmann methods (LBM). It is the first implementation of a generic platform for LBM programming, which is shared with the open source...

    Latest version of OpenLB is 1.1 and it was released on 2017-04-12.

    Tags: C Software, Computational Fluid Dynamics, Computeraided Engineering Software For Linux, Continuum Mechanics, Free Science Software, Free Software Programmed In C, Open Source Computer Aided Engineering Applications, Scientific Simulation Software
  • Molecular Dynamics of Mixtures by Stockholm University, Department of Materials and Environmental Chemistry, Division of Physical Chemistry

    Molecular Dynamics of Mixtures (MDynaMix) is a computer software package for general purpose molecular dynamics to simulate mixtures of molecules, interacting by AMBER- and CHARMM-like force fields...

    Latest version of Molecular Dynamics of Mixtures is 5.2.7 and it was released on 2015-01-31.

    Tags: Molecular Dynamics Software, Free Science Software, Free Software Programmed In C, Free Software Programmed In Fortran
  • Gravit by Gerald Kaszuba

    Gravit is a free and open source gravity simulator distributed under the GNU General Public License. The program is available for all major operating systems, including Linux and other Unix-like...

    Tags: Free Astronomy Software, Free Science Software, Science Education Software
  • libSBML

    LibSBML is an open-source software library that provides an application programming interface (API) for the SBML (Systems Biology Markup Language ) format. The libSBML library can be embedded in a...

    Tags: C Libraries, Free Software Programmed In C, Free Software, Crossplatform Free Software, Free Computer Libraries, Free Science Software
  • MOA by University of Waikato

    Massive Online Analysis (MOA) is a free open-source software project specific for data stream mining with concept drift. It is written in Java and developed at the University of Waikato, New...

    Latest version of MOA is 2014.11 and it was released on 2014/11/30.

    Tags: Data Mining And Machine Learning Software, Free Science Software, Software Programmed In Java, Free Data Analysis Software
  • Largescale AtomicMolecular Massively Parallel Simulator by Sandia National Laboratories,Temple University

    Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) is a molecular dynamics program from Sandia National Laboratories. LAMMPS makes use of Message Passing Interface (MPI) for parallel...

    Latest version of Large-scale Atomic/Molecular Massively Parallel Simulator is 11 Aug 2017 and it was released on 2017-08-11.

    Tags: Molecular Dynamics Software, Free Science Software
  • InVesalius

    InVesalius is a free medical software used to generate virtual reconstructions of structures in the human body. Based on two-dimensional images, acquired using computed tomography or magnetic...

    Latest version of InVesalius is 3.1.1 and it was released on 2017.

    Tags: Free Science Software, Medical Software, Neuroimaging Software, Free Healthcare Software, Free Bioimaging Software, Free Dicom Software
  • IT C Library

    IT++ is a C++ library of classes and functions for linear algebra, numerical optimization, signal processing, communications, and statistics. It is being developed by researchers in these areas and...

    Latest version of IT++ C++ Library is 4.3.1 and it was released on 2013-07-06.

    Tags: C Numerical Libraries, Chalmers University Of Technology, Free Science Software, Software Using The Gpl License
  • ImageJ by Wayne Rasband (retired from NIH)

    ImageJ is a public domain, Java-based image processing program developed at the National Institutes of Health. ImageJ was designed with an open architecture that provides extensibility via Java...

    Latest version of ImageJ is 1.51n and it was released on 2017-05-01.

    Tags: Free Science Software, Free Dicom Software, Free Bioimaging Software, Java Libraries, Java Platform Software, Free Software Programmed In Java, Publicdomain Software With Source Code
  • Gwyddion

    Gwyddion is a multiplatform modular free software for visualization and analysis of data from scanning probe microscopy (SPM) techniques (like AFM, MFM, STM, SNOM/NSOM). The project is led by its...

    Tags: Gnome Applications, Free Science Software, Science Software That Uses Gtk, Science Software For Linux
  • GNU Data Language by Marc Schellens

    The GNU Data Language (GDL) is a free alternative to IDL (Interactive Data Language). Together with its library routines, GDL is developed to serve as a tool for data analysis and visualization in...

    Latest version of GNU Data Language is 0.9.7 and it was released on 2017-01-21.

    Tags: Free Science Software, Free Software Programmed In C, Gnu Project Software, Numerical Programming Languages, Software That Uses Wxwidgets
  • Geant4 by Geant4 Collaboration

    Geant4 (for GEometry ANd Tracking) is a platform for "the simulation of the passage of particles through matter," using Monte Carlo methods. It is the successor of the GEANT series of software...

    Latest version of Geant4 is 10.3 and it was released on 2016-12-09.

    Tags: Experimental Particle Physics, Free Science Software, Free Software Programmed In C, Monte Carlo Particle Physics Software, Physics Software
  • GATE by ,

    General Architecture for Text Engineering or GATE is a Java suite of tools originally developed at the University of Sheffield beginning in 1995 and now used worldwide by a wide community of...

    Tags: Data Mining And Machine Learning Software, Free Computer Libraries, Free Science Software, Free Software Programmed In Java, Free Integrated Development Environments, Knowledge Representation, Natural Language Processing Toolkits, Ontology Editors
  • Encog Machine Learning Framework by Heaton Research, Inc and contributors

    Encog is a machine learning framework available for Java and .Net. Encog supports different learning algorithms such as Bayesian Networks, Hidden Markov Models and Support Vector Machines. However,...

    Latest version of Encog Machine Learning Framework is 3.4.0 and it was released on 2017-09-01.

    Tags: Neural Network Software, Data Mining And Machine Learning Software, Free Science Software, Software Programmed In Java, Free Data Analysis Software
  • Environment for DeveLoping KDDApplications Supported by IndexStructures by Ludwig Maximilian University of Munich,Heidelberg University,University of Southern Denmark

    ELKI (for Environment for DeveLoping KDD-Applications Supported by Index-Structures) is a knowledge discovery in databases (KDD, "data mining") software framework developed for use in research and...

    Latest version of Environment for DeveLoping KDD-Applications Supported by Index-Structures is 0.7.1 and it was released on 2016-02-11.

    Tags: Data Mining And Machine Learning Software, Free Artificial Intelligence Applications, Free Data Analysis Software, Free Science Software, Free Software Programmed In Java, Software Using The Gnu Agpl License
  • Emergent by University of Colorado at Boulder

    Emergent (formerly PDP++) is neural simulation software that is primarily intended for creating models of the brain and cognitive processes. Development initially began in 1995 at Carnegie Mellon...

    Tags: Neural Network Software, Science Software For Macos, Science Software For Windows, Science Software For Linux, Free Science Software, Software That Uses Qt
  • Deeplearning4j

    Deeplearning4j is a deep learning programming library written for Java and the Java virtual machine (JVM) and a computing framework with wide support for deep learning algorithms. Deeplearning4j...

    Latest version of Deeplearning4j is 0.7.2 and it was released on 2016-12-24.

    Tags: Applied Machine Learning, Artificial Neural Networks, Cluster Computing, Data Mining And Machine Learning Software, Deep Learning, Free Science Software, Free Software Programmed In Java, Free Software Programmed In Scala, Free Statistical Software, Hadoop, Image Processing, Information Technology Companies Of The United States, Java Libraries, Java Platform, Java Programming Language Family, Jvm Programming Languages, Machine Learning, Natural Language Processing, Numerical Programming Languages, Open Source Artificial Intelligence, Scala, Software Using The Apache License, Technology Companies Based In The San Francisco Bay Area
  • ELAN by The Language Archive

    ELAN is computer software, a professional tool to manually and semi-automatically annotate and transcribe audio or video recordings. It has a tier-based data model that supports multi-level,...

    Latest version of ELAN is 4.9.4 and it was released on 2016-05-19.

    Tags: Transcription, Linguistic Research Software, Free Qda Software, Free Science Software, Crossplatform Free Software, Qda Software, Qualitative Research, Science Software For Macos, Science Software For Linux
  • Distributed Evolutionary Algorithms in Python by François-Michel De Rainville, Félix-Antoine Fortin, Marc-André Gardner

    Distributed Evolutionary Algorithms in Python (DEAP) is an evolutionary computation framework for rapid prototyping and testing of ideas . It incorporates the data structures and tools required to...

    Latest version of Distributed Evolutionary Algorithms in Python is 1.0.2 and it was released on 2015-05-13.

    Tags: Articles With Example Python Code, Evolutionary Computation, Free Science Software, Python Scientific Libraries
  • CodeSaturne by Électricité de France

    Code_Saturne is a general-purpose computational fluid dynamics free computer software package. Developed since 1997 at Électricité de France R&D, Code_Saturne is distributed under the GNU GPL...

    Latest version of Code_Saturne is 5.0.0 and it was released on 2017-06-02.

    Tags: Computational Fluid Dynamics, Free Science Software, Engineering Software That Uses Qt, Computeraided Design Software For Linux, Computeraided Engineering Software For Linux
  • Cassandre by Christophe Lejeune

    Cassandre is a free open source software for computer assisted qualitative data analysis and interpretation in humanities and social sciences. Although it refers, like other CAQDAS-software, to...

    Latest version of Cassandre is 2.14.11.03 and it was released on Jan 2016.

    Tags: Free Qda Software, Free Science Software, Crossplatform Free Software, Qda Software, Qualitative Research, Science Software For Macos, Science Software For Linux
  • CLAN by Brian MacWhinney,Leonid Spektor

    The CLAN (Child Language Analysis) program is a cross-platform program designed by Brian MacWhinney and written by Leonid Spektor for the purpose of creating and analyzing transcripts in the Child...

    Latest version of CLAN (Child Language Analysis) is V 19-Aug-2017 11:00 and it was released on 19 August 2017.

    Tags: Free Qda Software, Free Science Software, Crossplatform Free Software, Qda Software, Qualitative Research, Science Software For Macos, Science Software For Linux
  • BOINC by University of California, Berkeley

    The Berkeley Open Infrastructure for Network Computing (BOINC, pronounced - rhymes with "oink"), an open-source middleware system, supports volunteer and grid computing. Originally developed to...

    Tags: Berkeley Open Infrastructure For Network Computing Projects, Crossplatform Free Software, Free Science Software, Software That Uses Wxwidgets, Volunteer Computing, Science Software For Macos, Science Software For Windows, Science Software For Linux
  • Aika by Aika Project

    Aika is an open source text mining engine. It can automatically extract and annotate semantic information into text. In case this information is ambiguous, Aika will generate several hypothetical...

    Latest version of Aika is 0.5 and it was released on 2017-06-01.

    Tags: Data Mining And Machine Learning Software, Free Computer Libraries, Free Science Software, Knowledge Representation, Natural Language Processing Toolkits, Neuralnetworksoftware, Crossplatform Software, Java, Free Software Programmed In Java, Linguisticresearchsoftware
  • NumPy by Community project

    NumPy (pronounced or sometimes ) is a library for the Python programming language, adding support for large, multi-dimensional arrays and matrices, along with a large collection of high-level...

    Latest version of NumPy is 1.12.1 and it was released on 2017-03-18.

    Tags: Array Programming Languages, Articles With Example Python Code, Free Mathematics Software, Free Science Software, Numerical Analysis Software For Linux, Numerical Analysis Software For Macos, Numerical Analysis Software For Windows, Numerical Programming Languages, Python Scientific Libraries
  • mlpack

    mlpack is a machine learning software library for C++, built on top of the Armadillo library. mlpack has an emphasis on scalability, speed, and ease-of-use. Its aim is to make machine learning...

    Latest version of mlpack is 2.0.3 and it was released on 2016-07-21.

    Tags: C Libraries, Data Mining And Machine Learning Software, Free Computer Libraries, Free Mathematics Software, Free Science Software, Free Software Programmed In C, Free Statistical Software
  • Armadillo C Library

    Armadillo is a linear algebra software library for the C++ programming language. It aims to provide efficient and streamlined base calculations, while at the same time having a straightforward and...

    Latest version of Armadillo C++ Library is 7.800.0 and it was released on 2017-02-17.

    Tags: Articles With Example C Code, C Numerical Libraries, Free Computer Libraries, Free Mathematics Software, Free Science Software, Free Software Programmed In C, Free Statistical Software, Numerical Linear Algebra, Software Using The Apache License
  • EgoNet by University of Florida

    EgoNet (Egocentric Network Study Software) for the collection and analysis of egocentric social network data. It helps the user to collect and analyse all the egocentric network data (all social...

    Latest version of EgoNet is 1.0.0 1ea8b79 and it was released on 2017-05-20.

    Tags: Social Networking Services, Data Analysis Software, Free Software Programmed In Java, Free Science Software
  • SHARC

    SHARC (Surface Hopping including ARbitrary Couplings) is an ab initio molecular dynamics program suite primarily dedicated to study the excited-state dynamics of molecules. It is free for academic...

    Latest version of SHARC is 1.0 and it was released on 2014-10-20..

    Tags: Molecular Dynamics Software, Free Science Software
  • Mimee by Pierre Brial

    Mimee is a program which can convert geographical coordinates between various datums and...

    Tags: Free Science Software, Geodesy
  • Image Studio Lite by LI-COR Biosciences

    Image Studio™ Lite is free image processing software used for quantitation of Western blot images and images from related...

    Tags: Free Science Software, Free Software Programmed In Java
  • BigDL by Intel

    BigDL is a deep learning framework, developed a.o. by Jason Dai and Sergey Ermolin at...

    Tags: Applied Machine Learning, Artificial Neural Networks, Data Mining And Machine Learning Software, Deep Learning, Free Science Software, Free Statistical Software, Image Processing, Information Technology Companies Of The United States, Machine Learning
  • SU2 code

    SU2 is a suite of open-source software tools written in C++ for the numerical solution of partial differential equations (PDE) and performing PDE constrained optimization. The primary applications...

    Latest version of SU2 code is 5.0.0 and it was released on {{Start date and age|2017|01}}.

    Tags: Computational Fluid Dynamics, Free Science Software, Free Computeraided Design Software, Scientific Simulation Software, 2012 Software
  • Nektar

    Nektar++ is a spectral/hp element framework designed to support the construction of efficient high-performance scalable solvers for a wide range of partial differential equations (PDE). The code is...

    Latest version of Nektar++ is 4.4.0 and it was released on March 2017.

    Tags: Computational Fluid Dynamics, Free Science Software, Free Computeraided Design Software, Scientific Simulation Software
  • MoFEM by University of Glasgow

    MoFEM (Mesh Orientated Finite Element Method) is an open source finite element analysis code developed and maintained at the University of Glasgow. MoFEM is tailored for the solution of...

    Tags: Finite Element Software, Scientific Simulation Software, Free Computeraided Design Software, Free Software Programmed In C, Computational Physics, Free Science Software, Finite Element Software For Linux, University Of Glasgow
  • ITK by Insight Software Consortium

    ITK is a cross-platform, open-source application development framework widely used for the development of image segmentation and image registration programs. Segmentation is the process of...

    Latest version of ITK is 4.11.0 and it was released on 2017-01-24.

    Tags: Computer Vision Software, Free Computer Libraries, Free Science Software, Free Software Programmed In C, Image Segmentation, Software Using The Apache License
  • JOELib by JOELib development team

    JOELib is computer software, a chemical expert system used mainly to interconvert chemical file formats. Because of its strong relationship to informatics, this program belongs more to the category...

    Latest version of JOELib is 2007-03-03 and it was released on 2007-03-03.

    Tags: Free Science Software, Free Software Programmed In Java, Computational Chemistry Software, Science Software For Linux
  • Virtual Cell

    Virtual Cell (VCell) is an open-source software platform for modeling and simulation of living organisms, primarily cells. It has been designed to be a tool for a wide range of scientists, from...

    Latest version of Virtual Cell is 6.1 and it was released on {{Start date and age|2017|04}}.

    Tags: Mathematical And Theoretical Biology, Systems Biology, Numerical Software, Numerical Differential Equations, Free Science Software
  • Orange by University of Ljubljana

    Orange is an open-source data visualization, machine learning and data mining toolkit. It features a visual programming front-end for explorative data analysis and interactive data visualization,...

    Latest version of Orange is 3.4.0 and it was released on 2017-03-06.

    Tags: Artificial Intelligence Applications, Crossplatform Free Software, Data Mining And Machine Learning Software, Data Visualization Software, Free Plotting Software, Free Science Software, Free Software Programmed In Python, Numerical Software, Science Software That Uses Qt, Software Using The Gpl License, Time Series Software
  • ND4S NDimensional Arrays for Scala

    ND4S is a free, open-source extension of the Scala programming language operating on the Java Virtual Machine - though it is compatible with both Java and Clojure. ND4S is a scientific computing...

    Latest version of ND4S: N-Dimensional Arrays for Scala is 0.7.2 and it was released on 2016-12-27.

    Tags: Array Programming Languages, Numerical Programming Languages, Data Mining And Machine Learning Software, Free Statistical Software, Java Platform, Java Programming Language Family, Jvm Programming Languages, Scala, Linear Algebra, Numerical Analysis, Computational Statistics, Artificial Neural Networks, Free Software Programmed In Java, Free Science Software, Numerical Analysis Software For Linux, Numerical Analysis Software For Macos, Numerical Analysis Software For Windows, Free Mathematics Software, Java Libraries, Numerical Software, Cluster Computing, Hadoop, Software Using The Apache License, Free Software Programmed In Scala
  • ND4J NDimensional Arrays for Java by Various

    ND4J is a scientific computing library, written in the programming language C++, operating on the Java virtual machine (JVM), and compatible with the languages Java, Scala, and Clojure. ND4J is for...

    Latest version of ND4J: N-Dimensional Arrays for Java is 0.5.0 and it was released on 2016-08-03.

    Tags: Array Programming Languages, Numerical Programming Languages, Data Mining And Machine Learning Software, Free Statistical Software, Java Platform, Java Programming Language Family, Jvm Programming Languages, Scala, Linear Algebra, Numerical Analysis, Computational Statistics, Artificial Neural Networks, Free Software Programmed In Java, Free Science Software, Numerical Analysis Software For Linux, Numerical Analysis Software For Macos, Numerical Analysis Software For Windows, Free Mathematics Software, Java Libraries, Numerical Software, Cluster Computing, Hadoop, Software Using The Apache License
  • HippoDraw by Paul F. Kunz

    HippoDraw is a powerful object oriented statistical data analysis package written in C++, with user interaction via a Qt-based GUI and a Python scriptable interface. It is being developed by Paul...

    Latest version of HippoDraw is 1.21.3 and it was released on {{Start date and age|2007|10}}.

    Tags: Data Analysis Software, Free Plotting Software, Free Science Software, Free Software Programmed In C, Free Software Projects, Free Statistical Software, Numerical Software, Physics Software, Science Software For Linux, Science Software For Macos, Science Software For Windows, Science Software That Uses Qt
  • Elmer FEM solver

    Elmer is computational tool for multi-physics problems. It has been developed by CSC in collaboration with Finnish universities, research laboratories and industry. Elmer FEM solver is free and...

    Latest version of Elmer FEM solver is 8.0 and it was released on 2015-05-05.

    Tags: Numerical Software, Free Computeraided Design Software, Finite Element Software For Linux, Free Software Programmed In Fortran, Free Science Software, Computational Physics, Engineering Software That Uses Qt, Computeraided Engineering Software For Linux, Software That Uses Tk
  • OrbitVis

    Orbit-Vis is an orbit simulation program which is designed to allow users to simulate a satellite in any orbit around the Earth, and to give the user data on the position and motion of the satellite...

    Tags: Science Software For Windows, Astronomy Software, Free Software, Computational Astronomy, Free Science Software, Free Astronomy Software, Science Education Software, Computational Physics, Space Science, Physics Software
  • Marble by KDE

    Marble is a virtual globe application which allows the user to choose among the Earth, the Moon, Venus, Mars and other planets to display as a 3-D model. It is free software under the terms of the...

    Latest version of Marble is 2.2.0 (Part of KDE Applications 17.04) and it was released on 2018-12-04.

    Tags: 2006 Software, Astronomy Software, Earth Sciences Graphics Software, Educational Software For Linux, Educational Software For Macos, Educational Software For Windows, Free Educational Software, Free Science Software, Free Software Programmed In C, Geography Education Software, Kde Education Project, Keyhole Markup Language, Maps, Openstreetmap, Remote Sensing, Route Planning Software, Software That Uses Qt, Virtual Globes
  • ROOT by CERN

    ROOT is an object-oriented program and library developed by CERN. It was originally designed for particle physics data analysis and contains several features specific to this field, but it is also...

    Latest version of ROOT is 6.10/04 and it was released on 2017-07-28.

    Tags: C Libraries, Data Analysis Software, Data Management Software, Experimental Particle Physics, Free Physics Software, Free Plotting Software, Free Science Software, Free Software Programmed In C, Numerical Software, Physics Software, Plotting Software
  • XDrawChem

    XDrawChem is a free software program for drawing chemical structural formulas, available for Unix and macOS. It is distributed under the GNU GPL. In Microsoft Windows this program is called...

    Latest version of XDrawChem is 1.9.9 and it was released on 2005-11-30.

    Tags: Chemistry Software, Free Science Software, Free Software Programmed In C, Free Software Programmed In Fortran, Science Software That Uses Qt, Chemistry Software For Linux
  • Advanced Simulation Library

    Advanced Simulation Library (ASL) is free and open-source hardware-accelerated multiphysics simulation platform. It enables users to write customized numerical solvers in C++ and deploy them on a...

    Latest version of Advanced Simulation Library is 0.1.7 and it was released on 2016-11-09.

    Tags: Computational Chemistry Software, Computeraided Engineering Software For Linux, Software Using The Gnu Agpl License, Computational Fluid Dynamics, Free Science Software, Open Source Computer Aided Engineering Applications, Articles Containing Video Clips, Gpgpu, Numerical Libraries, C Libraries
  • FeatFlow CFD Solver by TU Dortmund, Inst. of Applied Mathematics and Numerics, LS3

    FeatFlow is a free and open-source high-performance computational fluid dynamics CFD code solving the incompressible Navier-Stokes equations in two and three dimensions. Unique for CFD codes,...

    Tags: Fortran, Fortran Software, Computational Fluid Dynamics, Computeraided Engineering Software, Computeraided Engineering Software For Linux, Continuum Mechanics, Finite Element Software, Finite Element Software For Linux, Fluid Dynamics, Free Science Software, Free Software Programmed In Fortran, Free Software, Linuxonly Software, Open Source Computer Aided Engineering Applications, Scientific Simulation Software
  • 3D Slicer

    3D Slicer (Slicer) is a free and open source software package for image analysis and scientific visualization. Slicer is used in a variety of medical applications, including autism, multiple...

    Latest version of 3D Slicer is 4.6.2 and it was released on 2016-11-08.

    Tags: Computer Vision Software, Free 3d Graphics Software, Free Bioimaging Software, Free Biovisualization Software, Free Dicom Software, Free Healthcare Software, Free Science Software, Free Software Programmed In C, Free Software Programmed In Java, Free Software Programmed In Python, Free Software Programmed In Tcl, Science Software For Linux, Science Software That Uses Qt
  • GIMIAS

    GIMIAS is a workflow-oriented environment focused on biomedical image computing and simulation. The open source framework is extensible through plug-ins and is focused on building research and...

    Latest version of GIMIAS is 1.5.r4 and it was released on {{Start date and age|2012|10}}.

    Tags: Computer Vision Software, Free 3d Graphics Software, Free Science Software, Free Software Programmed In C, Free Healthcare Software, Free Dicom Software, Free Bioimaging Software, Free Biovisualization Software, Free Biosimulation Software
  • Fityk by Marcin Wojdyr

    Fityk is a curve fitting and data analysis application, predominantly used to fit analytical, bell-shaped functions to experimental data. It is positioned to fill the gap between general plotting...

    Latest version of Fityk is 1.3.1 and it was released on 2016-12-19.

    Tags: 2004 Software, Data Analysis Software, Free Plotting Software, Free Science Software, Free Software Programmed In C, Free Software Projects, Regression And Curve Fitting Software, Software That Uses Wxwidgets
  • Natural Language Toolkit

    The Natural Language Toolkit, or more commonly NLTK, is a suite of libraries and programs for symbolic and statistical natural language processing (NLP) for English written in the Python programming...

    Latest version of Natural Language Toolkit is 3.2.3 and it was released on 2017-05-16.

    Tags: Data Analysis Software, Free Linguistic Software, Free Science Software, Free Software Programmed In Python, Natural Language Parsing, Natural Language Processing, Natural Language Processing Toolkits, Python Libraries, Statistical Natural Language Processing
  • VTK by Kitware Inc.

    The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several...

    Latest version of VTK is 8.0.0 and it was released on 2017-06-26.

    Tags: Computer Vision Software, Free 3d Graphics Software, Free Biovisualization Software, Free Healthcare Software, Free Science Software, Free Software Programmed In C, Free Software Programmed In Java, Free Software Programmed In Perl, Free Software Programmed In Python, Free Software Programmed In Tcl, Software That Uses Qt, Software That Uses Tk, Software Using The Bsd License
  • The Grid Analysis and Display System by Center for Ocean-Land-Atmosphere Studies, Institute of Global Environment and Society, George Mason University

    The Grid Analysis and Display System (GrADS) is an interactive desktop tool that is used for easy access, manipulation, and visualization of earth science data. The format of the data may be either...

    Latest version of The Grid Analysis and Display System (GrADS) is 2.2.0 and it was released on 2017-09-05.

    Tags: Earth Sciences Graphics Software, Free Science Software, Graphic Software In Meteorology, Meteorological Data And Networks
  • MOEA Framework

    The MOEA Framework is an open-source evolutionary computation library for Java that specializes in multi-objective optimization. It supports a variety of multiobjective evolutionary algorithms...

    Latest version of MOEA Framework is 2.7 and it was released on 2015-12-11.

    Tags: Evolutionary Computation, Free Software Programmed In Java, Free Mathematics Software, Mathematical Optimization, Operations Research, Free Application Software, Free Science Software, Free Computer Libraries
  • Massively Parallel Monte Carlo by University of South Florida

    Massively Parallel Monte Carlo (MPMC) is an Monte Carlo method package primarily designed to simulate liquids, molecular interfaces, and functionalized nanoscale materials. It was developed...

    Tags: Monte Carlo Particle Physics Software, Science Software For Linux, Computational Physics, Monte Carlo Methods, Theoretical Chemistry, Stochastic Models, Molecular Modelling, Free Software Programmed In C
  • Quirkos by Quirkos Software

    Quirkos is a CAQDAS software package for the qualitative analysis of text data, commonly used in social science. It provides a graphical interface in which the nodes or themes of analysis are...

    Latest version of Quirkos is 1.4.1 and it was released on March 2017.

    Tags: Qda Software, Qualitative Research, Science Software For Macos, Science Software For Linux
  • f4analyse by dr. dresing & pehl GmbH - audiotranskription.de

    f4analyse is a software that supports the analysis and interpretation of qualitative data (CAQDAS). The software facilitates the analysis of qualitative text data within the framework of different...

    Latest version of f4analyse is 2.2 and it was released on Jun 2017.

    Tags: Qda Software, Qualitative Research, Science Software For Macos, Science Software For Linux
  • Autodesk Simulation

    Autodesk Simulation is a general-purpose multiphysics finite element analysis software package initially developed by ALGOR Incorporated and acquired by Autodesk in January 2009. It is intended for...

    Tags: Finite Element Software, Windows Software Stubs, Science Software For Linux, Finite Element Software For Linux
  • SPSS by IBM Corporation

    SPSS Statistics is a software package used for logical batched and non-batched statistical analysis. Long produced by SPSS Inc., it was acquired by IBM in 2009. The current versions (2015) are...

    Latest version of SPSS is 25.0 and it was released on 2017-08-08.

    Tags: Ibm Software, Java Platform Software, Proprietary Commercial Software For Linux, Science Software For Linux, Statistical Programming Languages, Statistical Software
  • AnyLogic by The AnyLogic Company (former XJ Technologies)

    AnyLogic is a multimethod simulation modeling tool developed by The AnyLogic Company (former XJ Technologies). It supports agent-based, discrete event, and system dynamics simulation methodologies....

    Latest version of AnyLogic is 8.1 Professional and it was released on 2017.

    Tags: Simulation Software, Free Simulation Software, Traffic Simulation, Java Development Tools, Science Software For Macos, Science Software For Windows, Science Software For Linux, Agentbased Software, 2000 Software
  • Stata by StataCorp

    Stata is a general-purpose statistical software package created in 1985 by StataCorp. Most of its users work in research, especially in the fields of economics, sociology, political science,...

    Latest version of Stata is 15.0 and it was released on 2017-06-06.

    Tags: 1985 Software, C Software, Proprietary Commercial Software For Linux, Science Software For Linux, Statistical Software
  • UrQMD HadronString Transport Model by Goethe University

    UrQMD (Ultra relativistic Quantum Molecular Dynamics) is a fully integrated Monte Carlo simulation package for Proton+Proton, Proton+nucleus and nucleus+nucleus interactions. UrQMD has many...

    Latest version of UrQMD Hadron-String Transport Model is UrQMD 3.4 and it was released on August 2014.

    Tags: Fortran Software, Physics Software, Monte Carlo Particle Physics Software, Science Software For Linux
  • Neuro Laboratory by Scientific Software

    Neuro Laboratory is a shareware scientific computing software for Windows and Linux platforms developed by Scientific Software. The current version is...

    Latest version of Neuro Laboratory is 1.1 and it was released on September, 2006.

    Tags: Science Software For Linux, Neural Network Software, Shareware, Science Software For Windows
  • FLUKA Particle Transport Code by INFN,CERN

    FLUKA (FLUktuierende KAskade) is a fully integrated Monte Carlo simulation package for the interaction and transport of particles and nuclei in matter. FLUKA has many applications in particle...

    Latest version of FLUKA Particle Transport Code is FLUKA 2011.2c.0 and it was released on 15 Oct 2014.

    Tags: Fortran Software, Physics Software, Monte Carlo Molecular Modelling Software, Science Software For Linux, Linuxonly Software
  • Transcriber

    Transcriber is a tool for the transcription and annotation of speech signals for linguistic research. It supports multiple hierarchical layers of segmentation, named entity annotation, speaker...

    Latest version of Transcriber is 1.5.1 and it was released on June 6, 2005.

    Tags: Linguistic Research Software, Free Software Programmed In Tcl, Software That Uses Tk, Qualitative Research, Science Software For Linux
  • Prime95 by George Woltman

    Prime95 is the freeware application written by George Woltman that is used by GIMPS, a distributed computing project dedicated to finding new Mersenne prime numbers. More specifically, Prime95...

    Latest version of Prime95 is 28.10 and it was released on 2016-10-30.

    Tags: Distributed Computing Projects, Primality Tests, Computer Benchmarks, Science Software For Macos, Science Software For Windows, Science Software For Linux, Bsd Software, Mathematical Software
  • Foldinghome by Pande Laboratory, Sony,Nvidia,ATI, Cauldron Development

    Folding@home (FAH or F@h) is a distributed computing project for disease research that simulates protein folding, computational drug design, and other types of molecular dynamics. The project uses...

    Latest version of Folding@home is 7.4.4 and it was released on 2014-03-19.

    Tags: Computerrelated Introductions In 2000, Bioinformatics, Computational Biology, Computational Chemistry, Crossplatform Software, Data Mining And Machine Learning Software, Distributed Computing Projects, Hidden Markov Models, Mathematical And Theoretical Biology, Molecular Dynamics Software, Molecular Modelling, Molecular Modelling Software, Playstation 3 Software, Proprietary Crossplatform Software, Protein Folds, Protein Structure, Simulation Software, Stanford University, Medical Technology, Medical Research Organizations, Science Software For Linux, Science Software For Macos, Science Software For Windows
  • GraphCalc by Mike Arrison and Brendan Fields

    GraphCalc is an open source computer program that runs in Microsoft Windows and Linux that provides the functionality of a graphing calculator. GraphCalc includes many of the standard features of...

    Latest version of GraphCalc is 4.0.1 and it was released on 2003-11-24.

    Tags: Free Plotting Software, Free Software Programmed In C, Plotting Software, Science Software For Windows, Science Software For Linux, 2000 Software, Free Educational Software
  • X12ARIMA by U.S. Census Bureau

    X-12-ARIMA was the U.S. Census Bureau's software package for seasonal adjustment. X-12-ARIMA can be used together with many statistical packages, such as Gretl or EViews which provides a graphical...

    Latest version of X-12-ARIMA is 0.3 and it was released on 2007-06-15.

    Tags: Free Econometrics Software, Free Statistical Software, Publicdomain Software With Source Code, Science Software For Windows, Science Software For Linux, United States Census Bureau, Time Series Software
  • Voreen

    Voreen (volume rendering engine) is an open source volume visualization library and development platform. Through the use of GPU-based volume rendering techniques it allows high frame rates on...

    Latest version of Voreen is 4.4 and it was released on 2013-12-20.

    Tags: Free Data Visualization Software, Free 3d Graphics Software, Free Software Programmed In C, 3d Imaging, Free Dicom Software, Free Bioimaging Software, Science Software That Uses Qt, Science Software For Linux
  • NetCDF Explorer

    NetCDF Explorer is a multi-platform graphical browser for netCDF files. netCDF Explorer can browse files locally or remotely, by means of OPeNDAP. HDF Explorer was developed by Space Research...

    Latest version of NetCDF Explorer is 1.00 and it was released on November 01, 2015.

    Tags: Meteorological Data And Networks, Earth Sciences Graphics Software, Science Software For Windows, Science Software For Linux
  • SOFA Statistics by Paton-Simpson & Associates Ltd

    SOFA Statistics is an open-source statistical package. The name stands for Statistics Open For All. It has a graphical user interface and can connect directly to MySQL, PostgreSQL, SQLite, MS...

    Latest version of SOFA Statistics is 1.4.6 and it was released on 2016-01-02.

    Tags: Crossplatform Free Software, Crossplatform Software, Free Statistical Software, Numerical Software, Science Software For Linux, Science Software For Macos, Science Software For Windows, Software That Uses Wxpython, Software Using The Gnu Agpl License
  • SAS by SAS Institute

    SAS (previously "Statistical Analysis System") is a software suite developed by SAS Institute for advanced analytics, multivariate analyses, business intelligence, data management, and predictive...

    Latest version of SAS is 9.4 and it was released on 2013-07-10.

    Tags: 4gl, Articles With Example Code, Business Intelligence, C Software, Data Mining And Machine Learning Software, Data Warehousing, Extract Transform Load Tools, Mathematical Optimization Software, Numerical Software, Proprietary Commercial Software For Linux, Proprietary Crossplatform Software, Science Software For Linux
  • DataScene by Cyberwit, Inc.

    DataScene is a scientific graphing, animation, data analysis, and real-time data monitoring software package. It was developed with the Common Language Infrastructure technology and the GDI+...

    Latest version of DataScene is 3.0.7 and it was released on March 2011.

    Tags: Animation Software, Computer Animation, Data Analysis Software, Data Visualization Software, Earth Sciences Graphics Software, Educational Math Software, Financial Charts, Graphics Software, Plotting Software, Mathematical Software, Regression And Curve Fitting Software, Science Software, Statistical Charts And Diagrams, Visualization, Web Animation, Graphicsrelated Software For Linux, Science Software For Linux, Science Software For Windows
  • baudline

    The baudline time-frequency browser is a signal analysis tool designed for scientific visualization. It runs on several Unix-like operating systems under the X Window System. Baudline is useful for...

    Tags: Timefrequency Analysis, Linux Media Players, Acoustics Software, Numerical Software, Unix Software, Audio Software With Jack Support, Science Software For Linux, Science Software For Macos, Audio Software For Linux
  • PhysX by NVIDIA Corporation

    PhysX is a proprietary realtime physics engine middleware SDK. PhysX was authored at NovodeX, an ETH Zurich spin-off. In 2004, NovodeX was acquired by Ageia, and in February 2008, Ageia was acquired...

    Latest version of PhysX is 9.17.0527 and it was released on 2017-06-29.

    Tags: Computer Physics Engines, Nvidia Software, Macos Programming Tools, Playstation 3 Software, Playstation 4 Software, Programming Tools For Windows, Proprietary Commercial Software For Linux, Proprietary Freeware For Linux, Science Software For Macos, Science Software For Windows, Virtual Reality, Wii Software, Xbox 360 Software
  • MAXQDA by VERBI GmbH

    MAXQDA is a software program designed for computer-assisted qualitative and mixed methods data, text and multimedia analysis in academic, scientific, and business institutions. It is being developed...

    Latest version of MAXQDA is 12.3.1 (Win and Mac) and it was released on 2017-02-24.

    Tags: Qda Software, Qualitative Research, Science Software For Macos
  • Evergreen by Georgia Public Library Service (GPLS) Public Information Network for Electronic Services (PINES) and the Evergreen Community

    Evergreen is an open source Integrated Library System (ILS), initially developed by the Georgia Public Library Service for Public Information Network for Electronic Services (PINES), a statewide...

    Latest version of Evergreen is 2.12.0 and it was released on 2017-03-22.

    Tags: Science Software For Macos, Science Software For Windows, Linux Library And Information Science Software, Free Library And Information Science Software, Free Software Programmed In Perl
  • GraphPad InStat by GraphPad Software, Inc.

    GraphPad InStat is a commercial scientific statistics software published by GraphPad Software, Inc., a privately owned California corporation. InStat is available for both Windows and Macintosh...

    Tags: Statistical Software, Science Software For Macos, Science Software For Windows
  • GraphPad Prism by GraphPad Software, Inc.

    GraphPad Prism is a commercial scientific 2D graphing and statistics software published by GraphPad Software, Inc., a privately held California corporation. Prism is available for both Windows and...

    Tags: Plotting Software, Regression And Curve Fitting Software, Science Software For Macos, Science Software For Windows
  • EarthBrowser by Lunar Software

    EarthBrowser is a virtual globe software developed by Lunar software. It is available online as a flash application or be installed locally as an AIR application. It focuses mainly on visualising...

    Latest version of EarthBrowser is 3.1.2 and it was released on 2009.

    Tags: Virtual Globes, Science Software For Macos, Science Software For Windows
  • Celestia by Chris Laurel, Celestia developers

    Celestia is a 3D astronomy program created by Chris Laurel. The program is based on the Hipparcos Catalogue (HIP) and allows users to travel through an extensive universe, modeled after reality, at...

    Tags: 2001 Software, Free Astronomy Software, Free Educational Software, Planetarium Software For Linux, Science Software That Uses Gtk, Amigaos 4 Software, Science Software For Macos, Science Software For Windows, Educational Software For Macos, Educational Software For Windows, Crossplatform Free Software, Luascriptable Software, Portable Software, Space Mmorpgs, Freeware
  • ChemDraw by CambridgeSoft

    ChemDraw is a molecule editor first developed in 1985 by David A. Evans and Stewart Rubenstein (later by the cheminformatics company CambridgeSoft). The company was sold to PerkinElmer in the year...

    Latest version of ChemDraw is 16.0 and it was released on August 2016.

    Tags: Chemistry Software, Science Software For Macos, Science Software For Windows
  • Starry Night by Simulation Curriculum Corp.

    Starry Night is a commercial planetarium software package, available for macOS and Microsoft Windows. Starry Night focuses heavily on providing attractive, realistic imagery, although recent...

    Latest version of Starry Night is 7.5.6 and it was released on 2017-04-07.

    Tags: Astronomy Software, Science Software For Macos, Science Software For Windows, Classic Mac Os Software
  • TheSky by Software Bisque

    TheSky is an astronomy application designed to be used for educational and observational purposes. TheSky provides an extensive feature set including the following: *The display of star charts...

    Tags: Astronomy Software, Science Software For Macos, Science Software For Windows
  • Digital Universe Atlas by American Museum of Natural History's Hayden Planetarium,National Aeronautics and Space Administration

    Digital Universe Atlas is a free open source software planetarium application, available under the terms of the Illinois Open Source License, and running on Linux, Windows, macOS (10.5 and above),...

    Tags: Amigaos 4 Software, Astronomy Software, Free Astronomy Software, Planetarium Software For Linux, Science Software For Macos, Science Software For Windows, Software Using The Ncsa License
  • XEphem by Elwood C. Downey

    XEphem is a Motif based ephemeris and planetarium program for Unix-like operating systems developed by Elwood C....

    Latest version of XEphem is 3.7.7 and it was released on 2015-08-09.

    Tags: Planetarium Software For Linux, Science Software For Macos, Astronomy Software
  • Stellarium by Alexander Wolf,Georg Zotti,Marcos Cardinot,Guillaume Chéreau,Bogdan Marinov,Timothy Reaves,Florian Schaukowitsch

    Stellarium is an open-source free-software planetarium, licensed under the terms of the GNU General Public License version 2, available for Linux, Windows and macOS. A port Stellarium called...

    Latest version of Stellarium is 0.16.0 and it was released on 2017-06-21.

    Tags: 2001 Software, Crossplatform Software, Free Astronomy Software, Free Educational Software, Free Software Programmed In C, Planetarium Software For Linux, Portable Software, Science Software For Macos, Science Software For Windows, Software That Uses Qt
  • Systrip

    Systrip is a visual environment for the analysis of time-series data in the context of biological networks. Systrip gathers bioinformatics and graph theoretical algorithms that can be assembled in...

    Latest version of Systrip is 1.0 and it was released on 27 May 2011.

    Tags: Articles Created Via The Article Wizard, Science Software For Windows, Linux Software
  • SPEED2000 by Sigrity

    SPEED2000 is a software package designed for electromagnetic simulation for the analysis and design of high-speed electronic systems. It combines an electromagnetic field solver with circuit and...

    Tags: Science Software For Windows
  • MasterPlex ReaderFit by MiraiBio Group of Hitachi Solutions America, Ltd.

    MasterPlex ReaderFit is a commercial curve-fitting software designed specifically for elisa assay analysis published by the MiraiBio Group of Hitachi Solutions America,...

    Latest version of MasterPlex ReaderFit is 2.0.0.66 and it was released on May 27, 2011.

    Tags: Regression And Curve Fitting Software, Science Software For Windows
  • MasterPlex QT by MiraiBio Group of Hitachi Software Engineering America, Ltd.

    MasterPlex QT is curve-fitting software published by the MiraiBio Group of Hitachi Software Engineering America, Ltd. It is designed for the analysis of data from the Luminex and Bio-Plex...

    Latest version of MasterPlex QT is 4.1.5.49 and it was released on Jan. 21, 2010.

    Tags: Regression And Curve Fitting Software, Science Software For Windows
  • QDA Miner by Provalis Research

    QDA Miner is a mixed methods and qualitative data analysis software developed by Provalis Research. The program was designed to assist researchers in managing, coding and analyzing qualitative...

    Tags: Qualitative Research, Qda Software, Science Software For Windows
  • Unistat by Unistat Ltd

    The Unistat computer program is a statistical data analysis tool featuring two modes of operation: The stand-alone user interface is a complete workbench for data input, analysis and visualization...

    Latest version of Unistat is 6.5 and it was released on October 15, 2013.

    Tags: Statistical Software, Science Software For Windows, Windowsonly Software
  • Statistica by Dell Software

    Statistica is an advanced analytics software package originally developed by StatSoft which was acquired by Dell in March, 2014. In November 2016, Dell sold off several pieces of its software group,...

    Latest version of Statistica is 13.0 (32-/64-bit) and it was released on September 2015.

    Tags: Statistical Software, Science Software For Windows, Windowsonly Software
  • Statgraphics by Statpoint Technologies, Inc.

    Statgraphics is a statistics package that performs and explains basic and advanced statistical functions. The software was created in 1980 by Dr. Neil Polhemus while working as a professor of...

    Latest version of Statgraphics is 17.1.08 and it was released on July, 2015.

    Tags: Statistical Software, Science Software For Windows
  • Opticks by Ball Aerospace & Technologies Corp.

    Opticks is a ] that supports imagery, video (motion imagery), synthetic aperture radar (SAR), multi-spectral, hyper-spectral, and other types of remote sensing data. Opticks supports processing...

    Tags: Remote Sensing Software, Science Software For Windows, Solaris Software, Free Software Programmed In C, 2001 Software, Synthetic Aperture Radar
  • SIMION

    SIMION is an ion optics simulation program that calculates electric fields for electrodes of defined voltages and ion trajectories in those...

    Latest version of SIMION is 8.1.1.1 and it was released on 2012-05-14.

    Tags: Mass Spectrometry Software, Science Software For Windows
  • Derive by Texas Instruments

    Derive was a computer algebra system, developed as a successor to muMATH by the Soft Warehouse in Honolulu, Hawaii, now owned by Texas Instruments. Derive was implemented in , also by Soft...

    Tags: 1988 Software, Computer Algebra Systems, Discontinued Software, Lisp Software, Science Software For Windows
  • Promine

    Promine Inc. is a company which produces a self-titled software used for mining engineering and geological work. Promine functions as an extension of AutoDesk's AutoCAD software, providing...

    Tags: Software Companies Of Canada, Science Software For Windows, Geology Software
  • PP3 by Torsten Bronger

    PP3 is free software that produces sky charts, focussing on high quality graphics and typography. It is distributed a license based on the MIT License, but with this restriction added: Sky charts...

    Latest version of PP3 is 1.3.3 and it was released on 2004-08-13.

    Tags: Free Astronomy Software, Science Software For Windows, Free Software Programmed In C
  • GEUP 7 by GEUP.net

    GEUP is a commercial interactive geometry software program, similar to Cabri Geometry. Originally using the Spanish language, it was programmed by Ramón Alvarez Galván. Recent versions include...

    Latest version of GEUP 7 is 7.0.2 and it was released on Jan 2017.

    Tags: Mathematical Software, Interactive Geometry Software, Science Software For Windows
  • imc FAMOS by imc Meßsysteme GmbH (integrated measurement & control), Berlin

    FAMOS is a graphical data analysis program for evaluating and visually displaying measurement results. The program, whose name is an acronym for Fast Analysis And Monitoring Of Signals, was...

    Tags: Science Software, Physics Software, Science Software For Windows, Data Analysis Software
  • Epi Info by Centers for Disease Control and Prevention

    Epi Map is a module that displays geographic maps with data from Epi Info. Epi Map is built around the Esri MapObjects software. Epi Map displays shapefiles containing the geographic boundaries...

    Latest version of Epi Info is 3.5.3 and it was released on 2011-01-26.

    Tags: Centers For Disease Control And Prevention, Publicdomain Software, Science Software For Windows, Data Analysis Software, Geographic Information Systems
  • Analytica by Lumina Decision Systems

    Analytica is a visual software package developed by Lumina Decision Systems for creating, analyzing and communicating quantitative decision models. As a modeling environment, it is interesting in...

    Tags: Mathematical Modeling, Mathematical Optimization Software, Science Software, Statistical Programming Languages, Visual Programming Languages, Numerical Programming Languages, Numerical Software, Array Programming Languages, Science Software For Windows, Computer Algebra Systems, Operations Research, Plotting Software, Mathematical Optimization
  • Vensim by Ventana Systems, Inc.

    Vensim is simulation software developed by Ventana Systems. It primarily supports continuous simulation (system dynamics), with some discrete event and agent-based modelling capabilities. It is...

    Latest version of Vensim is Version 6.4 and it was released on {{start date and age|df=yes|paren=yes|2016|06}}.

    Tags: Environmental Science Software, Mathematical Software, Numerical Software, Probabilistic Software, Risk Management Software, Science Software For Windows, Scientific Simulation Software, Simulation Programming Languages, Simulation Software
  • HDF Explorer

    HDF Explorer is a data visualization program that reads the HDF, HDF5 and netCDF data file formats. It runs in the Microsoft Windows operating systems. HDF Explorer was developed by Space Research...

    Latest version of HDF Explorer is 1.5.009 and it was released on October 08, 2015.

    Tags: Meteorological Data And Networks, Earth Sciences Graphics Software, Science Software For Windows
  • GoldSim by GoldSim Technology Group LLC

    GoldSim is dynamic, probabilistic simulation software developed by GoldSim Technology Group. This general-purpose simulator is a hybrid of several simulation approaches, combining an extension of...

    Latest version of GoldSim is 12.0 and it was released on 2017-02-15.

    Tags: Simulation Software, Risk Management Software, Scientific Simulation Software, Mathematical Software, Environmental Science Software, Numerical Software, Simulation Programming Languages, Probabilistic Software, Science Software For Windows
  • SpaceEngine by Vladimir Romanyuk

    SpaceEngine (stylized as "Space Engine") is a proprietary 3D astronomy program and game engine developed by Russian astronomer and programmer Vladimir Romanyuk. It creates a three-dimensional...

    Latest version of SpaceEngine is 0.9.8.0 and it was released on 30 July 2016.

    Tags: Astronomy Software, Science Software For Windows, Steam Greenlight Games, Video Game Engines, Articles Containing Video Clips
  • WinStars by Richard Franck

    WinStars is an ASCOM standard-compliant shareware planetarium, ephemeris and solar system simulator developed by Richard Franck for the Microsoft Windows operating system. WinStars includes the...

    Latest version of WinStars is 2.079 R3 and it was released on 2011-07-06.

    Tags: Astronomy Software, Science Software For Windows
  • SkyTools by Skyhound

    SkyTools is an observation-planning program for amateur astronomers, running under Windows. Unlike most astronomy software, SkyTools is not a planetarium but instead is centred on a database of...

    Latest version of SkyTools is 3.0a and it was released on 2008-12-17.

    Tags: Astronomy Software, Science Software For Windows
  • HNSKY by Han Kleijn

    HNSKY or Hallo Northern Sky is a popular freeware planetarium program for Linux and Microsoft Windows to simulate the night sky. It is provided with several non-English language modules, numerous...

    Latest version of HNSKY is 3.3.5g (Microsoft Windows); 3.4.0ß11_FPC (Linux) and it was released on 2017-08-22.

    Tags: Astronomy Software, Freeware, Science Software For Windows
  • Gravity

    Gravity (ver. 2.01) is a software program designed by Steve Safarik to simulate the motions of planetary bodies in space. Users can create solar systems of up to 16 bodies. Mass, Density, Initial...

    Latest version of Gravity is 2.01 and it was released on 1990-05-27.

    Tags: Science Software For Windows, Windowsonly Shareware, Astronomy Software
  • DeepSky Planner by Knightware

    Deep-Sky Planner is observation planning and logging software for amateur astronomers. It helps observers to determine where and when to view all types of celestial objects. It runs on...

    Latest version of Deep-Sky Planner is v7 and it was released on 2016-04-18.

    Tags: Astronomy Software, Science Software For Windows
  • FreeFlyer by a.i. solutions, Inc.

    FreeFlyer is a software application for use in satellite mission analysis, design and operations. FreeFlyer's architecture centers on its native scripting language, known as FreeForm script. As a...

    Latest version of FreeFlyer is 7.3 and it was released on {{start date and age|2017|9}}.

    Tags: 3d Graphics Software, Aerospace Engineering Software, Astronomy Software, Mathematical Software, Physics Software, Science Software For Windows
  • FlexPro by Weisang GmbH

    FlexPro is a software package for analysis and presentation of scientific and technical data, produced by Weisang GmbH. It runs on Microsoft Windows and is available in English, German, Japanese and...

    Tags: Plotting Software, Science Software For Windows, Data Visualization Software, Numerical Software, Regression And Curve Fitting Software