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Abalone

Molecular dynamicsmolecular graphics

Abalone Description
Abalone is a general purpose molecular dynamics and molecular graphics program for simulations of bio-molecules in a periodic boundary conditions in explicit (flexible SPC water model) or in implicit water models. Mainly designed to simulate the protein folding and DNA-ligand complexes in AMBER force field.
A list below shows Abalone alternatives which were either selected by us or voted for by users. You can filter this list by tags and platforms

Latest version of Abalone is 1.9.0 and it was released on 2016-05-17.

Abalone Alternatives

  • UCSF Chimera by Resource for Biocomputing, Visualization, and Informatics (RBVI), UCSF

    UCSF Chimera (or simply Chimera) is an extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies,...

    Latest version of UCSF Chimera is 1.11.2 and it was released on 2016-12-02.

    Tags: Bioinformatics Software, Freeware, Molecular Modelling Software, Science Software
  • TreeFinder by Gangolf Jobb

    Treefinder is a computer program for the likelihood-based reconstruction of phylogenetic trees from molecular sequences. It was written by Gangolf Jobb, a former researcher at the University of...

    Latest version of TreeFinder is march2011 and it was released on 2011-03-01.

    Tags: Computational Phylogenetics, Bioinformatics Software, Science Software, Molecular Biology, Genetics
  • TCoffee by Cédric Notredame, Centro de Regulacio Genomica (CRG) - Barcelona

    T-Coffee (Tree-based Consistency Objective Function For alignment Evaluation) is a multiple sequence alignment software using a progressive approach. It generates a library of pairwise alignments to...

    Latest version of T-Coffee is 11.00.8cbe486 and it was released on 2014-08-13.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • SPAdes by St. Petersburg State University, Russia,St. Petersburg Academic University, Russia,University of California, San Diego, USA

    SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. However, it might not be suitable for large genomes...

    Latest version of SPAdes is 3.10.1 and it was released on March 1st, 2017.

    Tags: Bioinformatics Algorithms, Bioinformatics Software, Dna Sequencing, Metagenomics Software
  • SEQUEST

    SEQUEST is a tandem mass spectrometry data analysis program used for protein identification. Sequest identifies collections of tandem mass spectra to peptide sequences that have been generated from...

    Tags: Proteomics, Bioinformatics Software, Mass Spectrometry Software
  • by Bennett N.F., Ganesan N Georgetown University

    Sequerome is a web-based Sequence profiling tool for integrating the results of a BLAST sequence-alignment report with external research tools and servers that perform advanced sequence...

    Tags: Bioinformatics Software, Freeware
  • RasMol by Herbert J. Bernstein

    RasMol is a computer program written for molecular graphics visualization intended and used mainly to depict and explore biological macromolecule structures, such as those found in the Protein Data...

    Latest version of RasMol is 2.7.5.1 and it was released on 2009-07-17.

    Tags: Bioinformatics Software, Molecular Modelling Software, Free Science Software, Free Software Programmed In C, Free Educational Software
  • PICRUSt by Morgan Langille,Jesse Zaneveld,Daniel McDonald,Greg Caporaso,Gavin Douglas

    PICRUSt is a bioinformatics software package. The name is an abbreviation for Phylogenetic Investigation of Communities by Reconstruction of Unobserved States. The tool serves in the field of...

    Tags: Metagenomics, Bioinformatics Software, Environmental Microbiology
  • Phyre2 by {{Plainlist| * Lawrence Kelley * Bob Maccallum * Benjamin Jefferys * Alex Herbert * Riccardo Bennett-Lovsey *Michael Sternberg}}

    Phyre and Phyre2 (Protein Homology/AnalogY Recognition Engine; pronounced as 'fire') are web-based services for protein structure prediction that are free for non-commercial use. Phyre is among the...

    Latest version of Phyre2 is 2.0 and it was released on 2011-02-23.

    Tags: Bioinformatics Software, Computational Science
  • PHYLogeny Inference Package by University of Washington

    PHYLogeny Inference Package (PHYLIP) is a free computational phylogenetics package of programs for inferring evolutionary trees (phylogenies). It consists of 35 portable programs, i.e., the source...

    Latest version of PHYLogeny Inference Package is 3.696 and it was released on 2014-11-02.

    Tags: Computational Phylogenetics, Bioinformatics Software
  • OpenChrom by Philip Wenig, Alexander Kerner, Lorenz Gerber, Matthias Mailänder, ...

    OpenChrom is an open source software for the analysis and visualization of mass spectrometric and chromatographic data. Its focus is to handle native data files from several mass spectrometry...

    Latest version of OpenChrom is 1.2.0 and it was released on 2017-08-25.

    Tags: Bioinformatics Software, Mass Spectrometry Software, Chemistry Software For Linux, Science Software For Macos, Science Software For Windows, Chromatography Software, Eclipse Software
  • OLIGO Primer Analysis Software by Molecular Biology Insights, Inc.

    OLIGO Primer Analysis Software was the first publicly available software for DNA primer design. The first papers describing this software were published in 1989 and 1990, and consecutive upgrades in...

    Latest version of OLIGO Primer Analysis Software is 7.54 and it was released on March 23, 2011.

    Tags: Bioinformatics Software
  • MUltiple Sequence Comparison by LogExpectation by drive5

    MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is computer software for multiple sequence alignment of protein and nucleotide sequences. It is licensed as public domain. The method was...

    Latest version of MUltiple Sequence Comparison by Log-Expectation is 3.8.31 and it was released on 2016-08-18.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Modeller by University of California, San Francisco,Accelrys

    Modeller, often stylized as MODELLER, is a computer program used for homology modeling to produce models of protein tertiary structures and quaternary structures (rarer). It implements a method...

    Latest version of Modeller is 9.19 and it was released on 2017-07-25.

    Tags: Molecular Modelling Software, Bioinformatics Software, Computational Biology
  • MEGAN by Daniel Huson et al.

    MEGAN ("MEtaGenome ANalyzer") is a computer program that allows optimized analysis of large metagenomic datasets. Metagenomics is the analysis of the genomic sequences from a usually uncultured...

    Latest version of MEGAN is 6.4 and it was released on 2016.

    Tags: Metagenomics Software, Bioinformatics Software, Computational Phylogenetics, Genetics, Molecular Biology
  • Molecular Evolutionary Genetics Analysis by Pennsylvania State University

    Molecular Evolutionary Genetics Analysis (MEGA) is computer software for conducting statistical analysis of molecular evolution and for constructing phylogenetic trees. It includes many...

    Latest version of Molecular Evolutionary Genetics Analysis is 7.0.26 and it was released on {{Start date and age|2017|05}}.

    Tags: Data Visualization Software, Bioinformatics Software
  • Mascot

    Mascot is a software search engine that uses mass spectrometry data to identify proteins from peptide sequence databases. Mascot is widely used by research facilities around the world. Mascot uses a...

    Latest version of Mascot is 2.6.00 and it was released on {{Start date and age|2016|12|df=yes}}.

    Tags: Proteomics, Bioinformatics Software, Mass Spectrometry Software
  • Jmol by Jmol development team

    Jmol is computer software for molecular modelling chemical structures in 3-dimensions. Jmol returns a 3D representation of a molecule that may be used as a teaching tool, or for research e.g., in...

    Tags: Bioinformatics Software, Chemistry Software For Linux, Free Chemistry Software, Free Software Programmed In Java, Molecular Modelling Software
  • MacVector by MacVector, Inc.

    MacVector is a commercial sequence analysis application for Apple Macintosh computers running Mac OS X. It is intended to be used by molecular biologists to help analyze, design, research and...

    Latest version of MacVector is 15.5.3 and it was released on [wiki=ecb0313c48409e389f36a444b070e0da]10 July 2016[/wiki].

    Tags: Bioinformatics Software, Computational Science
  • Kepler Scientific Workflow System

    Kepler is a free software system for designing, executing, reusing, evolving, archiving, and sharing scientific workflows. Kepler's facilities provide process and data monitoring, provenance...

    Latest version of Kepler Scientific Workflow System is 2.5 and it was released on 2015-10-28.

    Tags: Workflow Technology, Bioinformatics Software
  • ITASSER by Yang Zhang Lab

    I-TASSER (Iterative Threading ASSEmbly Refinement) is a bioinformatics method for predicting three-dimensional structure model of protein molecules from amino acid sequences. It detects structure...

    Tags: Bioinformatics, Bioinformatics Software
  • HHsearch by Johannes Söding

    HHsearch is an open-source software program for protein sequence searching that is part of the free HH-suite software package. HHpred is a free protein function and protein structure prediction...

    Latest version of HHsearch is 2.0.16 and it was released on 2013-02-18.

    Tags: Bioinformatics Software, Computational Science
  • HHsuite by Johannes Söding, Michael Remmert, Andreas Biegert, Andreas Hauser, Markus Meier, Martin Steinegger

    The HH-suite is an open-source software package for sensitive protein sequence searching. It contains programs that can search for similar protein sequences in protein sequence databases. These...

    Latest version of HH-suite is 2.0.16 and it was released on 2013-02-18.

    Tags: Bioinformatics Software, Computational Science
  • geWorkbench by Columbia University,,First Genetic Trust,National Cancer Institute

    geWorkbench (genomics Workbench) is an open-source software platform for integrated genomic data analysis. It is a desktop application written in the programming language Java. geWorkbench uses a...

    Latest version of geWorkbench is 2.6.0.3 and it was released on 2016-12-21.

    Tags: Bioinformatics Software, Free Software, Cluster Analysis, Systems Biology, Protein Structure, Gene Expression
  • GenMAPP by Alexander Pico, Kristina Hanspers, Nathan Salomonis, Kam Dahlquist, Scott Doniger, Jeff Lawlor, Alex Zambon, Lynn Ferrante, Karen Vranizan, Steven C. Lawlor, Bruce Conklin

    GenMAPP (Gene Map Annotator and Pathway Profiler) is a free, open-source bioinformatics software tool designed to visualize and analyze genomic data in the context of pathways (metabolic,...

    Tags: Bioinformatics Software, Free Science Software, Systems Biology, Windowsonly Free Software
  • GENESIS

    GENESIS (The GEneral NEural SImulation System) is a simulation environment for constructing realistic models of neurobiological systems at many levels of scale including: sub-cellular processes,...

    Latest version of GENESIS is 2.4 and it was released on {{Start date and age|2014|11}}.

    Tags: 1988 Software, Bioinformatics Software, Artificial Intelligence, Software Using The Gpl License
  • GeneMark by Georgia Institute of Technology

    GeneMark is a generic name for a family of ab initio gene prediction programs developed at the Georgia Institute of Technology in Atlanta. Developed in 1993, original GeneMark was used in 1995 as a...

    Tags: Metagenomics Software, Mathematical And Theoretical Biology, Genomics, Bioinformatics Software
  • GeneNetwork by GeneNetwork Development Team, University of Tennessee

    GeneNetwork is a combined database and open source bioinformatics data analysis software resource for systems genetics. This resource is used to study gene regulatory networks that link DNA sequence...

    Latest version of GeneNetwork is 2.0 and it was released on 2017-06-02.

    Tags: Biological Databases, Systems Biology, Bioinformatics Software, Software Using The Gnu Agpl License
  • Galaxy

    Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not...

    Latest version of Galaxy is 17.01 and it was released on 2017-02-23.

    Tags: Bioinformatics Software, Free Software Projects, Workflow Software
  • FastPCR

    FastPCR is an integrated tool for PCR primers or probes design, in silico PCR, oligonucleotide assembly and analyses, alignment and repeat...

    Tags: Bioinformatics, Bioinformatics Software, Polymerase Chain Reaction
  • DAVID Bioinformatics Resources by Laboratory of Immunopathogenesis and Bioinformatics

    DAVID (the Database for Annotation, Visualization and Integrated Discovery) is a free online url=://david.abcc.ncifcrf.gov The DAVID Bioinformatics Resources consists of the DAVID Knowledgebase and...

    Latest version of DAVID Bioinformatics Resources is 6.7 and it was released on 2010-01-27.

    Tags: Biological Databases, Bioinformatics Software, Laboratory Software, Systems Biology
  • CSBLAST by Angermueller C, Biegert A, and Soeding J

    CS-BLAST (Context-Specific BLAST) is a tool that searches a protein sequence that extends BLAST (Basic Local Alignment Search Tool), (Basic Local Alignment Search Tool) using context-specific...

    Latest version of CS-BLAST is 2.2.3 and it was released on 2013-12-07.

    Tags: Bioinformatics Software, Computational Science
  • cTAKES by Apache Software Foundation

    Apache cTAKES: clinical Text Analysis and Knowledge Extraction System is an open-source natural language processing system for information extraction from electronic health record clinical...

    Tags: Apache Software Foundation Projects, Electronic Health Record Software, Natural Language Processing Software, Free Healthcare Software, Bioinformatics Software
  • Coot by Paul Emsley,Kevin D. Cowtan

    The program Coot (Crystallographic Object-Oriented Toolkit) is used to display and manipulate atomic models of macromolecules, typically of proteins or nucleic acids, using 3D computer graphics. It...

    Latest version of Coot is 0.8.7 and it was released on 2016-11-08.

    Tags: Crystallography Software, Molecular Modelling Software, Bioinformatics Software, Free Science Software, Free Chemistry Software, Science Software That Uses Gtk, Science Software For Linux
  • Chemistry Development Kit by The CDK Project

    The Chemistry Development Kit (CDK) is computer software, a library in the programming language Java, for chemoinformatics and bioinformatics. It is available for Windows, Linux, Unix, and macOS. It...

    Tags: Bioinformatics Software, Chemistry Software For Linux, Computational Chemistry Software, Free Chemistry Software, Free Software Programmed In Java
  • Biopython

    The Biopython Project is an open-source collection of non-commercial Python tools for computational biology and bioinformatics, created by an international association of developers. It contains...

    Latest version of Biopython is 1.70 and it was released on 2017-07-11.

    Tags: Articles With Example Python Code, Bioinformatics Software, Computational Science, Python Scientific Libraries
  • BioPerl

    BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral role in the Human Genome...

    Latest version of BioPerl is 1.6.924 and it was released on 2014-07-10.

    Tags: Bioinformatics Software, Perl Software, Free Bioinformatics Software
  • BioJava

    BioJava is an open-source software project dedicated to provide Java tools to process biological data. BioJava is a set of library functions written in the programming language Java for manipulating...

    Latest version of BioJava is 4.2.1 and it was released on 2016-01-15.

    Tags: Bioinformatics Software, Java Platform Software
  • Bioconductor

    Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. Bioconductor is...

    Latest version of Bioconductor is 3.5 and it was released on 2017-04-25.

    Tags: Bioinformatics Software, Free Bioinformatics Software, Free Science Software, Free R Software, Science Software For Macos, Science Software For Windows, Science Software For Linux
  • Bioclipse by The Bioclipse Project

    The Bioclipse project is a Java-based, open source, visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). It gained scripting functionality in 2009. Like...

    Tags: Bioinformatics Software, Cheminformatics, Java Platform Software, Free Chemistry Software
  • BioBIKE

    BioBike(nee. BioLingua ) is a cloud-based, through-the-web programmable (Paas) symbolic biocomputing and bioinformatics platform that aims to make computational biology, and especially intelligent...

    Tags: Bioinformatics Software, Free Software Projects, Cloud Computing, Cloud Platforms
  • BioloMICS by BioAware SA NV

    BioloMICS is a bioinformatics software application developed by the company BioAware SA NV. It is tool allowing specialized and scientific biological databases to be created to fit the specific...

    Tags: Bioinformatics Software, Biological Databases
  • BALL project by BALL project team

    BALL (pronounced "ball") is computer software consisting of the versatile C++ class framework Biochemical Algorithms Library (BALL), a set of algorithms and data structures for molecular modelling...

    Latest version of BALL project is 1.4.2 and it was released on 2013-01-28.

    Tags: C Libraries, Computational Chemistry Software, Molecular Modelling Software, Bioinformatics Software, Free Bioinformatics Software, Chemistry Software For Linux, Science Software That Uses Qt, Articles With Example C Code
  • ArrayTrack by U.S. Food and Drug Administration

    ArrayTrack is a multi-purpose bioinformatics tool primarily used for microarray data management, analysis, and interpretation. ArrayTrack was developed to support in-house filter array research for...

    Latest version of ArrayTrack is 3.5.0 and it was released on 2010-03-03.

    Tags: Bioinformatics Software, Microarrays
  • BAliPhy by Benjamin Redelings

    BAli-Phy is a free software program for simultaneously estimating a multiple sequence alignment and its phylogenetic tree. BAli-Phy achieves high accuracy in alignment estimation by using...

    Latest version of BAli-Phy is 2.3.8 and it was released on {{release date and age|16|1|30|df=yes}}.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Anduril by University of Helsinki

    Anduril is an open source component-based workflow framework for scientific data analysis developed at the Systems Biology Laboratory, University of Helsinki. Anduril is designed to enable...

    Latest version of Anduril is 1.2.23 and it was released on 2014-06-24.

    Tags: Workflow Technology, Bioinformatics Software
  • Pipeline Pilot by Accelrys

    Pipeline Pilot is the authoring tool for the Accelrys Enterprise Platform. It is a scientific visual and dataflow programming language, used in various scientific domains, such as cheminformatics...

    Latest version of Pipeline Pilot is 8.5 CU3 and it was released on {{Start date|2012|05||df=yes/no}}.

    Tags: Science Software, Enterprise Application Integration, Extract Transform Load Tools, Bioinformatics Software, Computational Chemistry Software, Computer Vision Software, Data Analysis Software, Data Mining And Machine Learning Software, Data Visualization Software, Laboratory Software, Mass Spectrometry Software, Natural Language Processing Software, Numerical Software, Plotting Software, Proprietary Software, Visual Programming Languages, Articles Created Via The Article Wizard
  • XRATE by Ian Holmes (UC Berkeley)

    XRATE is a program for prototyping phylogenetic hidden Markov models and stochastic context-free grammars. It is used to discover patterns of evolutionary conservation in sequence alignments. The...

    Tags: Bioinformatics Software
  • WHAT IF by University of Groningen;,EMBL,Heidelberg;,CMBI,Radboud University Nijmegen;,Radboud University Nijmegen Medical Centre (Radboudumc),WHAT IF Foundation

    WHAT IF is a computer program used in a wide variety of computational (in silico) macromolecular structure research fields. The software provides a flexible environment to display, manipulate, and...

    Latest version of WHAT IF is 6.0 and it was released on {{Start date and age|2016|df=yes}}.

    Tags: Molecular Modelling Software, Bioinformatics Software, Protein Structure
  • ViennaRNA Package by Institut für theoretische Chemie, Währingerstr

    The ViennaRNA Package is a set of standalone programs and libraries used for prediction and analysis of RNA secondary structures. The source code for the package is distributed freely and compiled...

    Latest version of ViennaRNA Package is v2.3.3 and it was released on 2017-01-24.

    Tags: Bioinformatics Software, Bioinformatics Algorithms, Computational Biology
  • Vector NTI by Life Technologies

    Vector NTI is a commercial bioinformatics software package used by many life scientists to work, among other things, with nucleic acids and proteins in silico .]It]allows researchers to, for...

    Latest version of Vector NTI is Vector NTI Express v1.1.1 (Mac & Windows); Vector NTI Advance v11.5.2 (Windows & Mac w/PC Emulation) and it was released on 2012-09-20.

    Tags: Bioinformatics Software
  • TPP by Institute for Systems Biology

    The Trans-Proteomic Pipeline (TPP) is an open-source data analysis software for proteomics developed at the Institute for Systems Biology (ISB) by the Ruedi Aebersold group under the Seattle...

    Latest version of TPP is 5.0.0 and it was released on 2016-10-11.

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Health Sciences
  • taveRNA by Simon Fraser University

    taveRNA is a software suite for RNA/DNA secondary structure. It is developed in the laboratories for computational biology of the School of Computing Science at the Simon Fraser University. The...

    Tags: Bioinformatics Software, Simon Fraser University
  • TimeTree

    TimeTree is a free public database developed by S. Blair Hedges and Sudhir Kumar, now at Temple University, for presenting times of divergence in the tree of life. The basic concept has been to...

    Tags: Bioinformatics Software
  • Staden Package by James Bonfield, et al.

    The Staden Package is computer software, a set of tools for DNA sequence assembly, editing, and sequence analysis. It is open-source software, released under a BSD 3-clause...

    Latest version of Staden Package is 2.0.0b9 and it was released on 2012-01-24.

    Tags: Bioinformatics Software, Computational Science
  • Sirius by San Diego Supercomputer Center

    Sirius is a molecular modelling and analysis system developed at San Diego Supercomputer Center. Sirius is designed to support advanced user requirements that go beyond simple display of small...

    Latest version of Sirius is 1.2 and it was released on 2008-11-18.

    Tags: Molecular Modelling Software, Bioinformatics Software
  • ShelXle by Christian B. Hübschle

    The program ShelXle is a graphical user interface for the structure refinement program SHELXL. ShelXle combines an editor with syntax highlighting for the SHELXL-associated .ins (input) and .res...

    Latest version of ShelXle is 1.0.825 and it was released on 2017-01-28.

    Tags: Crystallography Software, Molecular Modelling Software, Bioinformatics Software, Free Science Software
  • SeqCorator by NoeGen Inc.

    SeqCorator is a bioinformatics software which can run in multiple operating systems (Windows, Mac OS, Unix/Linux) with the same...

    Latest version of SeqCorator is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • Scigress by Fujitsu Limited

    Scigress, stylized SCiGRESS, is a software suite for molecular modelling, computational chemistry, drug design, and materials science, a successor to Computer Aided Chemistry (CAChe)...

    Latest version of Scigress is 2.7(3.2) and it was released on {{Start date and age|2016|05}}.

    Tags: Molecular Modelling Software, Computational Chemistry, Molecular Modelling, Bioinformatics Software, Physics Software, Computational Chemistry Software
  • QuteMol by ISTI,CNR

    QuteMol is an open source, interactive, molecular visualization system. QuteMol utilizes the current capabilities of modern GPUs through OpenGL shaders to offer an array of innovative visual...

    Latest version of QuteMol is 0.4.1 and it was released on 2007-06-06.

    Tags: Molecular Modelling Software, Free Science Software, Chemistry Software For Linux, Free 3d Graphics Software, Free Software Programmed In C, Bioinformatics Software, Software That Uses Wxwidgets
  • ProteoWizard

    ProteoWizard is a set of open-source, cross-platform tools and libraries for proteomics data analyses. It provides a framework for unified mass spectrometry data file access and performs standard...

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Software Using The Apache License
  • PrimerPlex by PREMIER Biosoft

    PrimerPlex designs oligos for standard multiplex PCR assays and for bead-based suspension array systems such as BioPlex-200 and Luminex 100/200 based on xMAP technology. The assays are used for...

    Tags: Bioinformatics Software
  • Primer Premier by Premier Biosoft

    Primer Premier software combines design of primers for various PCR applications under one common platform. The software supports design of degenerate primers on alignments for amplifying related set...

    Tags: Bioinformatics Software
  • Phyloscan by Wadsworth Center, New York State Department of Health

    Phyloscan is a web service for DNA sequence analysis that is free and open to all users (without login requirement). For locating matches to a user-specified sequence motif for a regulatory binding...

    Latest version of Phyloscan is 2.2 and it was released on 2010-01-28.

    Tags: Bioinformatics, Bioinformatics Software, Computational Science
  • Phylogenetic Analysis Using Parsimony and other methods

    PAUP* (Phylogenetic Analysis Using Parsimony *and other methods) is a computational phylogenetics program for inferring evolutionary trees (phylogenies), written by David L. Swofford. Originally, as...

    Tags: Computational Phylogenetics, Bioinformatics Software
  • NoePrimer by NoeGen Inc.

    NoePrimer is a bioinformatics software which can run in multiple operating systems (windows, Mac OS, Unix/Linux) with the same...

    Latest version of NoePrimer is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • Newbler by 454 Life Sciences

    Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life...

    Latest version of Newbler is v2.7 and it was released on 2012-02-28.

    Tags: Bioinformatics Software, Computational Science
  • Metascape Bioinformatics Resources by Sanford Burnham, UCSD, GNF

    Metascape is a free gene annotation and analysis resource that helps biologists make sense of one or multiple gene lists. Metascape provides automated meta-analysis tools to understand either common...

    Latest version of Metascape Bioinformatics Resources is 3.0 and it was released on 2016-11-02.

    Tags: Biological Databases, Bioinformatics Software, Laboratory Software, Systems Biology
  • Mesquite A modular system for evolutionary analysis

    Mesquite is a software package primarily designed for phylogenetic analyses. It was developed as a successor to MacClade, when the authors recognized that implementing a modular architecture in...

    Latest version of Mesquite: A modular system for evolutionary analysis is 3.2 and it was released on 2017-01-01.

    Tags: Computational Phylogenetics, Bioinformatics Software, Phylogenetics
  • Mega2 by Daniel E. Weeks, Robert V. Baron, Justin R. Stickel.

    Mega2 (short for manipulation environment for genetic analysis) allows the applied statistical geneticist to convert one's data from several input formats to a large number output formats suitable...

    Latest version of Mega2 is 4.9.2 and it was released on 2017-06-13.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • MAVID by Nicolas Bray (UC Berkeley), Lior Pachter (UC Berkeley)

    MAVID is a multiple sequence alignment program suitable for the alignment of large numbers of DNA sequences. The sequences can be small mitochondrial genomes or large genomic regions up to megabases...

    Tags: Bioinformatics Software, Computational Phylogenetics
  • LabKey Server by LabKey

    LabKey Server is free, open source software available for scientists to integrate, analyze, and share biomedical research data. The platform provides a secure data repository that allows web-based...

    Latest version of LabKey Server is 17.2 and it was released on 2017-07-14.

    Tags: Bioinformatics Software, Free Bioinformatics Software, Free Science Software, Mass Spectrometry Software, Proteomics, Science Software For Windows, Science Software For Linux, Science Software For Macos
  • Jalview by Andrew Waterhouse, James Procter, David Martin and Geoffrey Barton at the University of Dundee.,Original version by Michele Clamp, James Cuff, Stephen Searle, Geoffrey Barton.

    Jalview is a piece of bioinformatics software that is used to look at and edit multiple sequence alignments. It is written in the Java programming language. The programme was originally written by...

    Latest version of Jalview is 2.10.1 and it was released on 2016-11-29.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Integrated Genome Browser

    Integrated Genome Browser (IGB) (pronounced Ig-Bee) is an open source genome browser, a visualization tool used to observe biologically-interesting patterns in genomic data sets, including sequence...

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • IMOD by David Mastronarde et al. at the Boulder Laboratory for 3-D Electron Microscopy of Cells

    IMOD is an open-source, cross-platform suite of modeling, display and image processing programs used for 3D reconstruction and modeling of microscopy images with a special emphasis on electron...

    Latest version of IMOD is 4.3.7 and it was released on February 23, 2012.

    Tags: Bioinformatics Software, Science Software, Freeware
  • HyPhy by Sergei L Kosakovsky Pond, Art FY Poon, Steven Weaver, N. Lance Hepler, Martin Smith.

    HYPHY is a free multiplatform (Mac, Windows and UNIX) Computational phylogenetics software package intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to...

    Latest version of HyPhy is June, 2012 and it was released on 2012-06-21.

    Tags: Computational Phylogenetics, Bioinformatics Software
  • GESS by NCSS, LLC

    GESS is a computer program for analyzing gene expression data obtained from microarrays. NCSS LLC is the name of the company that produces GESS. NCSS LLC also produces PASS (Power Analysis and...

    Latest version of GESS is GESS 2006 and it was released on May, 2006.

    Tags: Bioinformatics Software, Microarrays
  • GENtle by Magnus Manske

    GENtle is a free software under GPL...

    Latest version of GENtle is 1.9.0 and it was released on 2006-04-07.

    Tags: Bioinformatics Software, Free Science Software, Science Software For Linux, Software That Uses Wxwidgets
  • GenomeSpace by Broad Institute

    GenomeSpace is an environment for genomics software tools and applications. It helps users manage their analysis workflows involving multiple diverse tools, including web applications and desktop...

    Latest version of GenomeSpace is beta 5.0 and it was released on {{Start date and age|2012|04}}.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • GenGIS by Donovan Parks, Mike Porter, Timothy Mankowski, Suwen Wang, Sylvia Churcher, Alex Keddy, Christian Blouin, Jacqueline Whalley, Stephen Brooks, Rob Beiko

    GenGIS merges geographic, ecological and phylogenetic biodiversity data in a single interactive visualization and analysis environment. A key feature of GenGIS is the testing of geographic axes that...

    Latest version of GenGIS is 2.4.1 and it was released on 2015.

    Tags: Bioinformatics Software, Biogeography, Genetics, Molecular Biology
  • GenePattern by Broad Institute

    GenePattern is a freely available computational biology open-source software package developed at the Broad Institute of MIT and Harvard for the analysis of genomic data. Designed to enable...

    Latest version of GenePattern is 3.9.8 and it was released on June 2016.

    Tags: Bioinformatics Software, Dna Sequencing, Gene Expression
  • Gene Designer by DNA2.0

    Gene Designer is a computer software package for bioinformatics. It is used by molecular biologists from academia, government, and the pharmaceutical, chemical, agricultural, and biotechnology...

    Latest version of Gene Designer is 2.01.191 and it was released on 2015-10-09.

    Tags: Bioinformatics, Bioinformatics Software
  • Foldit by University of Washington, Center for Game Science, Department of Biochemistry

    Foldit is an online puzzle video game about protein folding. It is part of an experimental research project developed by the University of Washington, Center for Game Science, in collaboration with...

    Tags: 2008 Video Games, Linux Games, Macos Games, Windows Games, Puzzle Video Games, Humanbased Computation Games, Luascripted Video Games, Bioinformatics Software, Computational Biology, Molecular Biology, Protein Folding, Protein Structure, Gamification
  • FlyExpress

    FlyExpress is a free database that collects the expression patterns of Drosophila melanogaster in embryogenesis via a series of images submitted from BDGP, Fly-FISH and publications from other...

    Tags: Insect Developmental Biology, Model Organism Databases, Bioinformatics Software
  • FASTA by Pearson W.R.

    FASTA is a DNA and protein sequence alignment software package first described (as FASTP) by David J. Lipman and William R. Pearson in 1985. Its legacy is the FASTA format which is now ubiquitous in...

    Tags: Computational Phylogenetics, Bioinformatics Software
  • esyN

    esyN (Easy Networks) is an open source bioinformatics web-tool for visualizing, building and analysing molecular interaction networks. esyN is based on cytoscape.js and its aim is to make it easy...

    Latest version of esyN (Easy Networks) is 2.1 and it was released on 2016-01-17.

    Tags: Bioinformatics Software, Proteomics, Metabolomic Databases, Free Software
  • eMovie by Israel Structural Proteomics Center

    eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of...

    Tags: Molecular Modelling Software, Data Visualization Software, Bioinformatics Software
  • DNADynamo by BlueTractorSoftware Ltd

    DNADynamo is a commercial DNA sequence analysis software package produced by Blue Tractor Software Ltd that runs on Microsoft Windows, Mac OS X and Linux It is used by molecular biologists to...

    Tags: Bioinformatics Software, Computational Science
  • DECIPHER by Erik Wright

    Decipher, stylized as DECIPHER, is a software toolset that can be used to decipher and manage biological sequences efficiently using the programming language R. Some functions of the program are...

    Latest version of DECIPHER is 2.2.0 and it was released on {{Start date and age|2016}}.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Cytoscape

    Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression profiles and other state data. Additional features...

    Latest version of Cytoscape is 3.5.1 and it was released on 2017-04-26.

    Tags: Bioinformatics Software, Systems Biology, Mathematical And Theoretical Biology, Graph Drawing Software, Crossplatform Software, Java Platform Software
  • CLUSTAL by {{Plainlist| * Des Higgins * Fabian Sievers * David Dineen * Andreas Wilm (all at the Conway Institute, UCD)}}

    Clustal is a series of widely used computer programs used in Bioinformatics for multiple sequence...

    Latest version of CLUSTAL is 1.2.2 and it was released on 2016-07-01.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • CheShift2

    CheShift-2 (pronounced /tʃeʃɪft/) is an application created to compute 13Cα and 13Cβ protein chemical shifts and to validate protein structures. It is based on quantum mechanics computations of 13Cα...

    Latest version of CheShift-2 is 3.0 and it was released on 2013-09-01.

    Tags: Bioinformatics Software
  • Budapest Reference Connectome by Balázs Szalkai, Csaba Kerepesi, Bálint Varga, Vince Grolmusz

    The Budapest Reference Connectome server computes the frequently appearing anatomical brain connections of 418 healthy subjects. It has been prepared from diffusion MRI datasets of the Human...

    Tags: Computational Neuroscience, Neuroscience, Neuroinformatics, Bioinformatics, Bioinformatics Software, Free Bioinformatics Software
  • BLAT by Jim Kent,UCSC

    BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the...

    Tags: Bioinformatics Software, Laboratory Software
  • Biskit by Raik Grünberg, Johan Leckner, and others

    Biskit is an open source software package written in Python. The package facilitates research in Structural bioinformatics and molecular modelling. Biskit falls into two parts: * an Object-oriented...

    Tags: Bioinformatics Software, Molecular Modelling, Physics Software, Computational Chemistry Software, Free Science Software, Free Software Programmed In Python, Molecular Dynamics
  • BioPHP

    BioPHP is a collection of open source PHP code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other bioinformatics tools. BioRuby is released under the GNU GPL...

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • BioRuby

    BioRuby is a collection of Open Source Ruby code, comprising classes for computation molecular biology and bioinformatics. It contains classes for DNA and protein sequence analysis, sequence...

    Latest version of BioRuby is 1.5.0 and it was released on 2015-07-01.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • BioMart

    BioMart is a community-driven project to provide a single point of access to distributed research data. The BioMart project contributes open source software and data services to the international...

    Tags: Bioinformatics Software, Free Software Projects, Biological Databases, Data Warehousing Products
  • BioNumerics by Applied Maths N.V.

    BioNumerics is a suite of bioinformatics software applications developed by the company Applied Maths...

    Tags: Bioinformatics Software
  • Bioinformatic Harvester by Urban Liebel, Björn Kindler

    The Bioinformatic Harvester was a bioinformatic meta search engine created by the European Molecular Biology Laboratory and subsequently hosted and further developed by KIT Karlsruhe Institute of...

    Latest version of Bioinformatic Harvester is 4 and it was released on 2011-05-24.

    Tags: Bioinformatics Software, Biological Databases, Internet Search Engines, Biology Websites
  • Beacon Designer by Premier Biosoft

    Beacon Designer designs highly specific and efficient primers and probes for real time PCR (polymerase chain reaction) assays. It is compatible to work on Windows as well as on Mac. The software...

    Latest version of Beacon Designer is 7.9 and it was released on [wiki=58c032d8e88b253d5577448141ed2384]17 June 2010[/wiki].

    Tags: Bioinformatics Software
  • Archaeopteryx by Christian M. Zmasek

    Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees. This type of program can be used for a variety of analyses of...

    Latest version of Archaeopteryx is 0.972+ beta 9M and it was released on 2012.08.08.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • AMPHORA by Martin Wu, Jonathan Eisen et al.

    AMPHORA ("AutoMated Phylogenomic infeRence Application") is an open-source bioinformatics workflow. AMPHORA2 uses 31 bacterial and 104 archaeal phylogenetic marker genes for inferring phylogenetic...

    Latest version of AMPHORA is 2.0 and it was released on 2013.

    Tags: Metagenomics Software, Bioinformatics Software, Free Bioinformatics Software, Computational Phylogenetics, Free Science Software
  • AMAP by Ariel Schwartz (UC Berkeley), Lior Pachter (UC Berkeley)

    AMAP is a multiple sequence alignment program based on a new approach to multiple alignment called sequence annealing. This approach consists of building up the multiple alignment one match at a...

    Tags: Bioinformatics Software
  • AlleleID by PREMIER Biosoft

    AlleleID designs oligos for strain differentiation and taxa specific assays. This aids in bacterial identification, pathogen detection and species identification. The software is designed to run on...

    Latest version of AlleleID is 7.80 and it was released on 29 June 2013.

    Tags: Bioinformatics Software
  • Stemloc by Ian Holmes (UC Berkeley)

    Stemloc is a program for pairwise RNA structural alignment based on probabilistic models of RNA structure known as Pair stochastic context-free grammars. Stemloc implements constrained versions of...

    Tags: Bioinformatics Software
  • SplitsTree by Daniel Huson and David Bryant

    SplitsTree is a popular program for inferring phylogenetic trees or, more generally, phylogenetic networks from various types of data such as a sequence alignment, a distance matrix or a set of...

    Latest version of SplitsTree is 4.14.4 and it was released on 2008.

    Tags: Bioinformatics Software, Computational Phylogenetics, Genetics, Molecular Biology
  • RAPTOR by Bioinformatics Solutions Inc.

    RAPTOR is protein threading software used for protein structure prediction. It has been replaced by RaptorX, which is much more accurate than...

    Latest version of RAPTOR is 4.2 and it was released on {{Start date and age|2008|11}}.

    Tags: Bioinformatics Software, Molecular Modelling Software
  • NoeClone by NoeGen Inc.

    NoeClone is a bioinformatics software which can run in multiple operating systems (Windows, Mac OS, Unix/Linux) with the same...

    Latest version of NoeClone is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • MAFFT by Kazutaka Katoh

    In bioinformatics, MAFFT is a multiple sequence alignment program for amino acid or nucleotide sequences. The software is named after the acronym Multiple Alignment using Fast Fourier Transform...

    Latest version of MAFFT is 7.299 and it was released on 2016-06-28.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Handel by Ian Holmes (UC Berkeley)

    Handel is a suite of programs for multiple sequence alignment. Since it is based on a model of DNA sequence evolution that explicitly incorporates insertion and deletion events, it effectively...

    Tags: Bioinformatics Software
  • Giant Virus Finder by Csaba Kerepesi

    The Giant Virus Finder is a free bioinformatics software for finding giant viruses in...

    Tags: Metagenomics Software, Bioinformatics Software, Free Bioinformatics Software, Free Science Software
  • GENSCAN by Christopher Burge

    In bioinformatics GENSCAN is a program to identify complete gene structures in genomic DNA. It is a GHMM-based program that can be used to predict the location of genes and their exon-intron...

    Tags: Bioinformatics Software
  • Dendroscope by Daniel Huson et al.

    Dendroscope is an interactive computer software program written in Java for viewing Phylogenetic trees. This program is designed to view trees of all sizes and is very useful for creating figures....

    Latest version of Dendroscope is 3.2.10 and it was released on 2013.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Apache Taverna by Apache Software Foundation (myGrid for 2.x)

    Apache Taverna is an open source software tool for designing and executing workflows, initially created by the myGrid project under the name Taverna Workbench, now a project under the Apache...

    Latest version of Apache Taverna is 2.5 and it was released on 2014-04-16.

    Tags: Workflow Technology, Bioinformatics Software, School Of Computer Science University Of Manchester, Workflow Software, Apache Software Foundation, Apache Software Foundation Projects, Software Using The Apache License
  • BLAST by Altschul SF,Gish W,Miller W,Myers EW,Lipman DJ,NCBI

    In bioinformatics, BLAST for Basic Local Alignment Search Tool is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of proteins or the nucleotides...

    Latest version of BLAST is 2.6.0+ and it was released on 2016-12-07.

    Tags: Bioinformatics Algorithms, Computational Phylogenetics, Bioinformatics Software, Laboratory Software, Publicdomain Software
  • HMMER by Sean Eddy, Travis Wheeler, HMMER development team

    HMMER is a free and commonly used software package for sequence analysis written by Sean Eddy. Its general usage is to identify homologous protein or nucleotide sequences, and to perform sequence...

    Latest version of HMMER is 3.0 and it was released on 2010-03-28.

    Tags: Bioinformatics Software, Free Science Software, Free Software Programmed In C, Computational Science
  • MorphoBank by The MorphoBank Project

    MorphoBank is a web application for collaborative evolutionary research, specifically phylogenetic systematics or cladistics, on the phenotype. Historically, scientists conducting research on...

    Tags: Web Applications, Bioinformatics Software
  • OpenMS

    OpenMS is an open-source project for data analysis and processing in protein mass spectrometry and is released under the 3-clause BSD licence. It supports most common operating systems including...

    Latest version of OpenMS is 2.1.0 and it was released on 2016-11-22.

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Software Using The Bsd License
  • UGENE by Unipro

    UGENE is computer software for bioinformatics. It works on desktop computer operating systems such as Windows, macOS, or Linux. It is released as free and open-source software, under a GNU General...

    Latest version of UGENE is 1.27 and it was released on 2017-08-23.

    Tags: Bioinformatics Software, Free Science Software, Free Software Programmed In C, Computational Science
  • Yambo by Conor Hogan, Myrta Gruning, Daniele Varsano, Davide Sangalli, Andrea Ferretti, Pedro Melo, Ryan McMillan, Fabio Affinito, Alejandro Molina-Sanchez, Henrique Miranda

    Yambo is a computer software package for studying many-body theory aspects of solids and molecule systems. It calculates the excited state properties of physical systems from first principles, e.g.,...

    Latest version of Yambo is 4.1.2 and it was released on 2016-12-20.

    Tags: Physics Software, Computational Chemistry Software, Free Physics Software
  • TeraChem by PetaChem

    TeraChem is the first computational chemistry software program written completely from scratch to benefit from the new streaming processors such as graphics processing units (GPUs). The...

    Latest version of TeraChem is 1.9 and it was released on 2016-06-15.

    Tags: Molecular Modelling, Computational Chemistry, Computational Chemistry Software, Electronic Structure Methods
  • PLATO

    PLATO (Package for Linear-combination of ATomic Orbitals) is a suite of programs for electronic structure calculations. It receives its name from the choice of basis set (numeric atomic orbitals)...

    Tags: Computational Chemistry Software
  • ORCA by Frank Neese

    ORCA (Quantum Chemistry Program) is an ab initio quantum chemistry program package that contains modern electronic structure methods including density functional theory, many-body perturbation,...

    Tags: Computational Chemistry Software
  • Open Babel by Open Babel development team

    Open Babel is computer software, a chemical expert system mainly used to interconvert chemical file formats. Due to the strong relationship to informatics this program belongs more to the category...

    Latest version of Open Babel is 2.4.0 and it was released on 2016-09-25.

    Tags: Computational Chemistry Software, Free Chemistry Software, Free Software Programmed In C, Chemistry Software For Linux, Software That Uses Wxwidgets
  • MOE by Chemical Computing Group

    Molecular Operating Environment (MOE) is a drug discovery software platform that integrates visualization, modeling and simulations, as well as methodology development, in one package. MOE...

    Tags: Molecular Modelling Software, Chemistry Software For Linux, Computational Chemistry Software
  • Molden

    Molden is a general molecular and electronic structure processing...

    Latest version of Molden is 5.0.6 and it was released on 2013-04-09.

    Tags: Molecular Modelling Software, Computational Chemistry Software, Chemistry Software For Linux
  • JOELib by JOELib development team

    JOELib is computer software, a chemical expert system used mainly to interconvert chemical file formats. Because of its strong relationship to informatics, this program belongs more to the category...

    Latest version of JOELib is 2007-03-03 and it was released on 2007-03-03.

    Tags: Free Science Software, Free Software Programmed In Java, Computational Chemistry Software, Science Software For Linux
  • Ghemical

    Ghemical is a computational chemistry software package written in C++ and released under the GNU General Public License. The program has graphical user interface based on GTK+2 and supports quantum...

    Tags: Computational Chemistry Software, Free Software Programmed In C, Free Chemistry Software, Free Educational Software, Science Software That Uses Gtk
  • GAMESSUK by Computing for Science Ltd.,CCLRC Daresbury Laboratory

    General Atomic and Molecular Electronic Structure System (GAMESS-UK) is a computer software program for computational chemistry. The original code split in 1981 into GAMESS-UK and GAMESS (US)...

    Latest version of GAMESS-UK is 7.0 and it was released on 2010-01-01.

    Tags: Computational Chemistry Software, Science And Technology Facilities Council, Science And Technology In Cheshire
  • FreeON

    FreeON is an experimental, open source (GPL) suite of programs for linear scaling quantum chemistry, formerly known as MondoSCF. It is highly modular, and has been written from scratch for N-scaling...

    Latest version of FreeON is 1.0.8 and it was released on 2013-11-08.

    Tags: Computational Chemistry Software
  • Gabedit by A.R. ALLOUCHE

    Gabedit is a Graphical User Interface to GAMESS (US), Gaussian, MOLCAS, MOLPRO, MPQC, OpenMopac, PC GAMESS, Orca and Q-Chem computational chemistry...

    Latest version of Gabedit is 2.4.8 and it was released on 2014-02-07.

    Tags: Computational Chemistry Software, Scientific Software That Uses Gtk, Free Chemistry Software, Chemistry Software For Linux
  • Firefly by Moscow State University, Chemistry Department

    Firefly, formerly named PC GAMESS, is an ab initio computational chemistry program for Intel-compatible x86, x86-64 processors based on GAMESS (US) sources. However, it has been mostly rewritten...

    Latest version of Firefly is 8.1.1 and it was released on 2015-09-03.

    Tags: Computational Chemistry Software
  • Extensible Computational Chemistry Environment by Pacific Northwest National Laboratory

    The Extensible Computational Chemistry Environment (ECCE, pronounced "etch-ā") provides a sophisticated graphical user interface, scientific visualization tools, and the underlying data management...

    Latest version of Extensible Computational Chemistry Environment (ECCE) is 7.0 and it was released on 2013-08-01.

    Tags: Molecular Modelling Software, Computational Chemistry Software
  • CP2K

    CP2K is a freely available (GPL) program, written in Fortran 2003, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general...

    Latest version of CP2K is 4.1 and it was released on 2016-10-05.

    Tags: Free Physics Software, Free Software Programmed In Fortran, Density Functional Theory Software, Computational Chemistry Software, Free Chemistry Software, Chemistry Software For Linux
  • Chemicalize by ChemAxon

    Chemicalize is an online platform for chemical calculations, search, and text processing. It is developed and owned by ChemAxon and offers various cheminformatics tools in freemium model: chemical...

    Tags: Computational Chemistry Software, Chemical Databases
  • Avogadro

    Avogadro is a molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It is extensible...

    Latest version of Avogadro is Avogadro 1.2 and it was released on 2016-06-15.

    Tags: Free Chemistry Software, Free Software Programmed In C, Molecular Modelling Software, Computational Chemistry Software, Science Software That Uses Qt, Chemistry Software For Linux
  • aqion

    Aqion is a hydrochemistry software tool. It bridges the gap between scientific software (such like PhreeqC) and the calculation/handling of "simple" water-related tasks in daily routine practice....

    Latest version of aqion is version 6.3 and it was released on May 2017.

    Tags: Computational Chemistry Software, Science Education Software
  • ICMBrowser by Molsoft LLC

    ICM-Browser is a free product of Molsoft, and provides access to structural biology data and protein families. It reads PDB or alignment files directly from online databases and provides a molecular...

    Latest version of ICM-Browser is 3.5-0 and it was released on February 21, 2007.

    Tags: Molecular Modelling Software, Computational Chemistry Software
  • MADNESS by Oak Ridge National Laboratory,Stony Brook University,Virginia Tech,Argonne National Laboratory

    MADNESS (Multiresolution Adaptive Numerical Environment for Scientific Simulation) is a high-level software environment for the solution of integral and differential equations in many dimensions...

    Tags: Numerical Software, Parallel Computing, Mathematical Software, Free Mathematics Software, Computational Chemistry Software
  • Advanced Simulation Library

    Advanced Simulation Library (ASL) is free and open-source hardware-accelerated multiphysics simulation platform. It enables users to write customized numerical solvers in C++ and deploy them on a...

    Latest version of Advanced Simulation Library is 0.1.7 and it was released on 2016-11-09.

    Tags: Computational Chemistry Software, Computeraided Engineering Software For Linux, Software Using The Gnu Agpl License, Computational Fluid Dynamics, Free Science Software, Open Source Computer Aided Engineering Applications, Articles Containing Video Clips, Gpgpu, Numerical Libraries, C Libraries
  • ADF Info by Scientific Computing & Modelling

    Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory (DFT). ADF was first developed in the early...

    Latest version of ADF Info is 2017.106 and it was released on June 2017.

    Tags: Computational Chemistry Software, Molecular Modelling Software, Molecular Dynamics Software, Density Functional Theory Software
  • BigDFT by Commissariat à l'énergie atomique,Basel University

    BigDFT is a free software package for physicists and chemists, distributed under the GNU General Public License, whose main program allows the total energy, charge density, and electronic structure...

    Tags: Computational Physics, Density Functional Theory Software, Free Physics Software, Computational Chemistry Software
  • CASTEP

    CASTEP (Cambridge Serial Total Energy Package) is a commercial software package which uses density functional theory with a plane wave basis set to calculate the electronic properties of crystalline...

    Latest version of CASTEP is 17.2 and it was released on 2017-02-28.

    Tags: Computational Chemistry Software, Physics Software, Density Functional Theory Software
  • HORTON

    HORTON, the Helpful Open-source Research TOol for N-fermion systems, is an open-source modular quantum chemistry program written primarily in Python. It is composed of several quantum mechanical...

    Latest version of HORTON is 2.0.0 and it was released on June 11, 2015.

    Tags: Computational Chemistry Software, Density Functional Theory Software
  • Jaguar by Schrödinger Inc.

    Jaguar is an ab initio quantum chemistry package for both gas and solution phase calculations, with strength in treating metal-containing systems. It is commercial software marketed by the company...

    Tags: Computational Chemistry Software, Proprietary Commercial Software For Linux
  • Materials Studio by Accelrys, now BIOVIA

    Materials Studio is software for simulating and modeling materials. It is developed and distributed by BIOVIA (formerly Accelrys), a firm specializing in research software for computational...

    Latest version of Materials Studio is 5.5.2 and it was released on {{Start date and age|2017}}.

    Tags: Simulation Software, Computational Chemistry Software
  • NWChem by Pacific Northwest National Laboratory

    NWChem is an ab initio computational chemistry software package which also includes quantum chemical and molecular dynamics functionality. It was designed to run on high-performance parallel...

    Latest version of NWChem is 6.6 and it was released on October 20, 2015.

    Tags: Computational Chemistry Software, Free Chemistry Software, Chemistry Software For Linux
  • PSI4 by The PSI4 Project

    PSI is an ab initio computational chemistry package originally written by the research group of Henry F. Schaefer, III (University of Georgia). Utilizing PSI, one can perform a calculation on a...

    Latest version of PSI4 is PSI4 1.1 and it was released on 2017-05-19.

    Tags: Computational Chemistry Software, Free Chemistry Software, Chemistry Software For Linux
  • Spartan by Wavefunction, Inc. & Q-Chem

    Spartan is a molecular modelling and computational chemistry application from Wavefunction. It contains code for molecular mechanics, semi-empirical methods, ab initio models, density functional...

    Latest version of Spartan is Spartan'16 and it was released on {{Start date and age|2016}}.

    Tags: Molecular Modelling Software, Computational Chemistry Software, Electronic Structure Methods, Monte Carlo Molecular Modelling Software
  • TURBOMOLE by Turbomole GmbH

    TURBOMOLE is an ab initio computational chemistry program that implements various quantum chemistry methods. It was initially developed by the group of Prof. Reinhart Ahlrichs at the University of...

    Tags: Computational Chemistry Software
  • Yet Another Scientific Artificial Reality Application by YASARA Biosciences,WHAT IF Foundation,Spronk NMR Consultancy

    Yet Another Scientific Artificial Reality Application (YASARA) is a computer program for molecular visualising, modelling, and dynamics. It has many scientific uses, as expressed by the large number...

    Latest version of Yet Another Scientific Artificial Reality Application is 16.7.22 and it was released on 2016-07-22.

    Tags: Molecular Modelling Software, Molecular Dynamics Software
  • TREMOLOX

    TREMOLO-X is a software package used for the numerical simulation of interactions between atoms and molecules, the molecular dynamics. TREMOLO-X was originally developed at the Institute for...

    Tags: Molecular Dynamics Software
  • MacroModel by Schrödinger, LLC

    MacroModel is a computer program for molecular modelling of organic compounds and biopolymers. It features various chemistry force fields, plus energy minimizing algorithms, to predict geometry and...

    Latest version of MacroModel is 11.3 and it was released on {{Start date and age|2016|03}}.

    Tags: Molecular Modelling Software, Molecular Dynamics Software
  • Orac by CEA, Saclay, Paris, FR; Florence University, IT

    In computer software, Orac is a classical molecular dynamics program, to simulate complex molecular systems at the atomistic level. In 1989-1990, the code was written originally by Massimo Marchi...

    Latest version of Orac is 5.4.1 and it was released on {{Start date and age|2010}}.

    Tags: Fortran Software, Molecular Dynamics Software
  • MMTK

    The Molecular Modelling Toolkit (MMTK) is an open-source software package written in Python, which performs common tasks in molecular modelling. , MMTK consists of about 18,000 lines of Python...

    Latest version of MMTK is 2.7.4 and it was released on 2011-04-28.

    Tags: Molecular Modelling Software, Molecular Dynamics Software, Python Software
  • MesoBioNano Explorer by MBN Research Center

    MBN Explorer (MesoBioNano Explorer) is a software package for molecular dynamics simulations, structure optimization and kinetic Monte Carlo simulations. It is designed for computational analysis of...

    Latest version of MesoBioNano Explorer is 3.0 and it was released on 2017-03-31.

    Tags: Molecular Dynamics Software, Molecular Modelling Software, Physics Software
  • GROMOS by Wilfred van Gunsteren. Philippe Hünenberger, Sereina Riniker, Chris Oostenbrink

    GROMOS is the name of a force field for molecular dynamics simulation, and a related computer software package. Both are developed at the University of Groningen, and at the Computer-Aided Chemistry...

    Latest version of GROMOS is GROMOS 11 v1.3.0 and it was released on {{Start date and age|2011|05|df=yes}}.

    Tags: C Software, Fortran Software, Molecular Dynamics Software, Force Fields
  • GROMACS by University of Groningen,Royal Institute of Technology,Uppsala University

    GROningen MAchine for Chemical Simulations (GROMACS) is a molecular dynamics package mainly designed for simulations of proteins, lipids and nucleic acids. It was originally developed in the...

    Latest version of GROMACS is 2016.3 and it was released on 2017-03-14.

    Tags: Molecular Dynamics Software, Free Software Programmed In C
  • Assisted Model Building with Energy Refinement by University of California, San Francisco

    Assisted Model Building with Energy Refinement (AMBER) is a family of force fields for molecular dynamics of biomolecules originally developed by Peter Kollman's group at the University of...

    Latest version of Assisted Model Building with Energy Refinement (AMBER) is Amber16, AmberTools17 and it was released on 2017-04-17.

    Tags: Fortran Software, Molecular Dynamics Software, Force Fields
  • Tinker by Jay Ponder Lab, Department of Chemistry, Washington University in St. Louis; Pengyu Ren Lab, Department of Biomedical Engineering, the University of Texas at Austin; Jean-Philip Piquemal Pierre and Marie Curie University

    Tinker, stylized as TINKER, is a computer software application for molecular dynamics simulation with a complete and general package for molecular mechanics and molecular dynamics, with some special...

    Latest version of Tinker is 8.1.2 and it was released on 2017-02-17.

    Tags: Science Software, Molecular Dynamics Software, Monte Carlo Molecular Modelling Software, Washington University In St Louis
  • Q by The Q development team at Uppsala University,Sweden,Uppsala Molekylmekaniska HB

    Q is a computer software package for molecular dynamics (MD) simulation (current release: Q6). Unlike other MD codes, it has specialized since its conception (Marelius et al. 1998) on three specific...

    Latest version of Q is 6.0 and it was released on {{Start date and age|2017}}.

    Tags: Molecular Dynamics Software
  • Desmond by D. E. Shaw Research

    Desmond is a software package developed at D. E. Shaw Research to perform high-speed molecular dynamics simulations of biological systems on conventional computer clusters. The code uses novel...

    Tags: Molecular Dynamics Software, Force Fields
  • CHARMM by Martin Karplus,Accelrys

    Chemistry at Harvard Macromolecular Mechanics (CHARMM) is the name of a widely used set of force fields for molecular dynamics, and the name for the molecular dynamics simulation and analysis...

    Latest version of CHARMM is c40b1, c40b2 and it was released on {{Start date and age|2015|df=yes}}.

    Tags: Molecular Dynamics Software, Force Fields, Fortran Software, Harvard University
  • Nanoscale Molecular Dynamics by University of Illinois at Urbana-Champaign: Theoretical and Computational Biophysics Group (TCB), Parallel Programming Laboratory (PPL)

    Nanoscale Molecular Dynamics (NAMD, formerly Not Another Molecular Dynamics Program) is computer software for molecular dynamics simulation, written using the Charm++ parallel programming model. It...

    Latest version of Nanoscale Molecular Dynamics is 2.11 and it was released on 2015-12-22.

    Tags: Molecular Dynamics Software, Free Science Software
  • Ascalaph Designer by Agile Molecule

    Ascalaph Designer is a computer program for general purpose molecular modelling for molecular design and simulations. It provides a graphical environment for the common programs of quantum and...

    Latest version of Ascalaph Designer is 1.8.94 and it was released on 2015-12-03.

    Tags: Molecular Modelling Software, Molecular Dynamics Software, Free Science Software
  • Foldinghome by Pande Laboratory, Sony,Nvidia,ATI, Cauldron Development

    Folding@home (FAH or F@h) is a distributed computing project for disease research that simulates protein folding, computational drug design, and other types of molecular dynamics. The project uses...

    Latest version of Folding@home is 7.4.4 and it was released on 2014-03-19.

    Tags: Computerrelated Introductions In 2000, Bioinformatics, Computational Biology, Computational Chemistry, Crossplatform Software, Data Mining And Machine Learning Software, Distributed Computing Projects, Hidden Markov Models, Mathematical And Theoretical Biology, Molecular Dynamics Software, Molecular Modelling, Molecular Modelling Software, Playstation 3 Software, Proprietary Crossplatform Software, Protein Folds, Protein Structure, Simulation Software, Stanford University, Medical Technology, Medical Research Organizations, Science Software For Linux, Science Software For Macos, Science Software For Windows
  • Molecular Dynamics of Mixtures by Stockholm University, Department of Materials and Environmental Chemistry, Division of Physical Chemistry

    Molecular Dynamics of Mixtures (MDynaMix) is a computer software package for general purpose molecular dynamics to simulate mixtures of molecules, interacting by AMBER- and CHARMM-like force fields...

    Latest version of Molecular Dynamics of Mixtures is 5.2.7 and it was released on 2015-01-31.

    Tags: Molecular Dynamics Software, Free Science Software, Free Software Programmed In C, Free Software Programmed In Fortran
  • Largescale AtomicMolecular Massively Parallel Simulator by Sandia National Laboratories,Temple University

    Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) is a molecular dynamics program from Sandia National Laboratories. LAMMPS makes use of Message Passing Interface (MPI) for parallel...

    Latest version of Large-scale Atomic/Molecular Massively Parallel Simulator is 11 Aug 2017 and it was released on 2017-08-11.

    Tags: Molecular Dynamics Software, Free Science Software
  • Winmostar

    Winmostar is a molecular modelling and visualisation software program that computes quantum chemistry, molecular dynamics, and solid...

    Tags: Molecular Dynamics Software
  • SHARC

    SHARC (Surface Hopping including ARbitrary Couplings) is an ab initio molecular dynamics program suite primarily dedicated to study the excited-state dynamics of molecules. It is free for academic...

    Latest version of SHARC is 1.0 and it was released on 2014-10-20..

    Tags: Molecular Dynamics Software, Free Science Software
  • Avizo

    Avizo (pronounce: ‘a-VEE-zo’) is a general-purpose commercial software application for scientific and industrial data visualization and analysis. Avizo is developed by FEI Visualization Sciences...

    Latest version of Avizo is 9.2 and it was released on {{Start date and age|2016|07}}.

    Tags: 3d Graphics Software, 3d Imaging, Computational Fluid Dynamics, Computer Vision Software, Data Visualization Software, Earth Sciences Graphics Software, Graphics Software, Image Processing Software, Image Segmentation, Mesh Generators, Molecular Dynamics Software, Molecular Modelling Software, Nondestructive Testing, Physics Software, Science Software, Simulation Software, Software That Uses Qt, Virtual Reality
  • SWISSMODEL

    SWISS-MODEL is a structural bioinformatics web-server dedicated to homology modeling of protein 3D structures. Homology modeling is currently the most accurate method to generate reliable...

    Tags: Bioinformatics, Molecular Modelling Software
  • Molekel by Swiss National Supercomputing Centre

    Molekel is a free software multiplatform molecular visualization program. It was originally developed at the University of Geneva by Peter F. Flükiger in the 1990s for Silicon Graphics Computers. In...

    Latest version of Molekel is 5.4 and it was released on {{Start date and age|2009|08}}.

    Tags: Chemistry Software For Linux, Free Chemistry Software, Molecular Modelling Software, Science Software That Uses Qt
  • MesoBioNano Studio by MBN Research Center

    MBN Studio (MesoBioNano Studio) is a general-purpose computer program for molecular modeling and design, as well as for visualization and analysis of atomistic simulations data. It is written in the...

    Latest version of MesoBioNano Studio is 3.0 and it was released on 2017-03-31.

    Tags: Molecular Modelling Software, Molecular Modelling, Physics Software
  • LigandScout by Inte:Ligand GmbH

    LigandScout is computer software that allows creating three-dimensional (3D) pharmacophore models from structural data of macromolecule-ligand complexes, or from training and test sets of organic...

    Latest version of LigandScout is 4.0 and it was released on {{Start date and age|2016}}.

    Tags: Medicinal Chemistry, Molecular Modelling Software
  • Biochemical and Organic Simulation System by Jorgensen Research Group, Yale University

    Biochemical and Organic Simulation System (BOSS) is a general-purpose molecular modeling program that performs molecular mechanics calculations, Metropolis Monte Carlo statistical mechanics...

    Latest version of Biochemical and Organic Simulation System is 4.9 and it was released on {{Start date and age|2013|01}}.

    Tags: Molecular Modelling Software, Monte Carlo Molecular Modelling Software
  • VMD by University of Illinois at Urbana-Champaign

    Visual molecular dynamics (VMD) is a molecular modelling and visualization computer program. VMD is developed as mainly a tool to view and analyze the results of molecular dynamics simulations. It...

    Latest version of VMD is 1.9.3 and it was released on {{Start date and age|2016|11}}.

    Tags: Molecular Modelling Software
  • PyMOL by Schrödinger, Inc.

    PyMOL is computer software, a molecular visualization system created by Warren Lyford DeLano. It is user-sponsored, open-source software, released under the Python License. It was commercialized...

    Latest version of PyMOL is 1.8.6.2 and it was released on 2017-06-26.

    Tags: Articles Containing Video Clips, Chemistry Software For Linux, Free Chemistry Software, Molecular Modelling Software, Software That Uses Tk
  • CoNTub

    CoNTub is a software project written in Java which runs on Windows, Mac OS X, Linux and Unix Operating systems through any Java-enabled web browser. It is the first implementation of an algorithm...

    Latest version of CoNTub is 2.0 and it was released on {{release date and age |2011|09}}.

    Tags: Molecular Modelling Software, Freeware, Science Software, Java Platform Software
  • LIGPLOT by European Bioinformatics Institute

    In bioinformatics LIGPLOT is a computer program that generates schematic 2-D representations of protein-ligand complexes from standard Protein Data Bank file input. The LIGPLOT is used to generate...

    Tags: Molecular Modelling Software
  • WinBUGS by The BUGS Project

    WinBUGS is statistical software for Bayesian analysis using Markov chain Monte Carlo (MCMC) methods. It is based on the BUGS (Bayesian inference Using Gibbs Sampling) project started in 1989. It...

    Latest version of WinBUGS is 1.4.3 and it was released on 2007-08-06.

    Tags: Statistical Software, Monte Carlo Software, Windowsonly Free Software, Bayesian Statistics
  • PSG2 Serpent by VTT

    Serpent is a continuous-energy Monte Carlo reactor physics code capable for highly detailed, three-dimensional burnup calculation. It is under current development at VTT Technical Research Centre of...

    Latest version of PSG2 Serpent is 1.1.19 and it was released on 2013-04-02.

    Tags: Nuclear Technology, Nuclear Safety And Security, Monte Carlo Software, Physics Software, Scientific Simulation Software, Monte Carlo Particle Physics Software
  • MCNP by LANL

    Monte Carlo N-Particle Transport Code (MCNP) is a software package for simulating nuclear processes. It is developed by Los Alamos National Laboratory since at least 1957 with several further major...

    Latest version of MCNP is MCNP 6.1 and it was released on 2013-08-05.

    Tags: Nuclear Technology, Nuclear Safety And Security, Monte Carlo Software, Physics Software, Fortran Software, Scientific Simulation Software, Monte Carlo Particle Physics Software
  • Stan

    Stan is a probabilistic programming language for statistical inference written in C++. The Stan language is used to specify a (Bayesian) statistical model with an imperative program calculating the...

    Latest version of Stan is 2.14.0 and it was released on 2016-12-26.

    Tags: Computational Statistics, Free Bayesian Statistics Software, Monte Carlo Software, Numerical Programming Languages, Probabilistic Software
  • OpenBUGS by OpenBUGS Foundation

    OpenBUGS is a software application for the Bayesian analysis of complex statistical models using Markov chain Monte Carlo (MCMC) methods. OpenBUGS is the open source variant of WinBUGS (Bayesian...

    Latest version of OpenBUGS is v3.2.3 and it was released on 2014-03-08.

    Tags: Free Bayesian Statistics Software, Numerical Programming Languages, Monte Carlo Software
  • LaplacesDemon by Statisticat, LLC.

    LaplacesDemon is an open-source statistical package that is intended to provide a complete environment for Bayesian inference. LaplacesDemon has been used in numerous fields. The user writes their...

    Latest version of LaplacesDemon is 15.03.19 and it was released on 2015-03-19.

    Tags: Free Bayesian Statistics Software, Monte Carlo Software
  • PyMC3

    PyMC3 is a Python package for Bayesian statistical modeling and probabilistic machine learning which focuses on advanced Markov chain Monte Carlo and variational fitting algorithms. It is a rewrite...

    Latest version of PyMC3 is 3.1 and it was released on 2017-06-25.

    Tags: Computational Statistics, Free Bayesian Statistics Software, Monte Carlo Software, Numerical Programming Languages, Probabilistic Software
  • Raman Tool Set

    Raman Tool Set is a free software package for processing and analysis of Raman spectroscopy datasets. It has been developed mainly aiming to Raman spectra analysis, but since it works with 2-columns...

    Latest version of Raman Tool Set is 2.1.0 and it was released on 2017.

    Tags: Science Software, Raman Spectroscopy, Spectroscopy
  • PeakFit by Systat Software, Inc.

    PeakFit is an automated nonlinear peak separation and analysis software package for scientists performing spectroscopy, chromatography and electrophoresis. It automatically finds and fits up to 100...

    Latest version of PeakFit is 4.1.2 and it was released on 2007.

    Tags: Science Software, Regression And Curve Fitting Software
  • Isis by USGS Astrogeology - Flagstaff

    Integrated Software for Imagers and Spectrometers, also abbreviated to Isis, is a specialized software package developed by the USGS to process images and spectra collected by current and past NASA...

    Latest version of Isis is 3.3.0 and it was released on 2011-10-11.

    Tags: Image Processing Software, Works About Astronomy, Science Software, Publicdomain Software
  • EMIGMA by Petros Eikon Incorporated

    EMIGMA is a geophysics interpretation software platform developed by Petros Eikon Incorporated for data processing, simulation, inversion and imaging as well as other associated tasks. The software...

    Latest version of EMIGMA is V9.1 and it was released on {{Start date and age|2016|10}}.

    Tags: Windows, Science Software, Proprietary Software
  • PhotoModeler by Eos Systems Inc.

    PhotoModeler is a software application that performs image-based modeling and close range stereophotogrammetry - producing 3D models and measurements from photography. Close Range Photogrammetry...

    Latest version of PhotoModeler is 2017.1 and it was released on Aug 22, 2017.

    Tags: Science Software, Photo Software, Stereophotogrammetry
  • SOCET SET by BAE Systems

    SOCET SET is a software application that performs functions related to photogrammetry. It is developed and published by BAE Systems. SOCET SET was among the first commercial digital photogrammetry...

    Latest version of SOCET SET (GXP) is 5.6.0 and it was released on Jun,2011.

    Tags: Science Software, Image Processing Software
  • SICONOS SImulation and COntrol of NOnsmooth Systems by INRIA

    SICONOS is an Open Source scientific software primarily targeted at modeling and simulating non-smooth dynamical systems (NSDS): * Mechanical systems (Rigid body or solid) with Unilateral contact...

    Latest version of SICONOS - SImulation and COntrol of NOnsmooth Systems is 3.7.1 and it was released on September 2014.

    Tags: Free Software, Science Software
  • PicoScope by Pico Technology

    PicoScope is computer software for real-time signal acquisition of Pico Technology oscilloscopes. PicoScope is supported on Microsoft Windows, Mac OS X, Debian and Ubuntu platforms. PicoScope is...

    Latest version of PicoScope is 6.10 and it was released on {{Start date and age|2015|03}}.

    Tags: Science Software
  • OECake by Prometech Software, Inc.

    OE-Cake, OE-CAKE! or OE Cake is a 2D fluid physics sandbox which was used to demonstrate the Octave Engine fluid physics simulator created by Prometech Software Inc.. It was one of the first engines...

    Tags: Video Game Development Software, Video Game Engines, Science Software, Computer Physics Engines
  • MovAlyzeR by NeuroScript

    MovAlyzeR is a software package for handwriting movement analysis for research and professional applications. Handwriting movements are recorded using a digitizing tablet connected to a computer....

    Latest version of MovAlyzeR is 6.1 and it was released on 2010-07-27.

    Tags: Research, Science Software
  • LabRAD by Markus Ansmann and Matthew Neeley (UCSB)

    LabRAD (RAD = Rapid Application Development) is an open source data acquisition and instrument control platform targeted at (university) research laboratories. It provides a framework to modularize...

    Latest version of LabRAD is [http://downloads.sourceforge.net/labrad/LabRAD-v1.1.3.exe v1.1.3] and it was released on Jan 23rd, 2009.

    Tags: Industrial Automation Software, Science Software
  • AnimatLab by David W. Cofer, Gennady Cymbalyuk, James Reid, Ying Zhu, William J. Heitler, and Donald H. Edwards

    AnimatLab is an open-source neuromechanical simulation tool that allows authors to easily build and test biomechanical models and the neural networks that control them to produce behaviors. Users...

    Latest version of AnimatLab is 2.0.7 and it was released on 2013-06-08.

    Tags: Robotics Simulation Software, Scientific Simulation Software, Science Software
  • ARTS

    ARTS (Atmospheric Radiative Transfer Simulator) is a widely used atmospheric radiative transfer simulator for infrared, microwave, and sub-millimeter wavelengths. While the model is developed by a...

    Latest version of ARTS is 2.2.61 and it was released on 2016-09-08.

    Tags: Science Software
  • 1000Minds by 1000Minds Ltd

    1000Minds is a web application for decision-making and conjoint analysis supplied by 1000Minds Ltd since 2002. 1000Minds helps business, government and non-profit users to make decisions based on...

    Tags: Decisionmaking Software, Science Software
  • 3D Virtual Creature Evolution by Lee Graham

    3D Virtual Creature Evolution, abbreviated to 3DVCE, is an artificial evolution simulation program created by Lee Graham. The website is currently down. Its purpose is to visualize and research...

    Tags: Artificial Life, Science Software, Artificial Life Models, Simulation Software
  • FORM by Jos Vermaseren, et al.

    FORM is a symbolic manipulation system. It reads text files containing definitions of mathematical expressions as well as statements that tell it how to manipulate these expressions. Its original...

    Tags: Computer Algebra Systems, Free Computer Algebra Systems, Free Software Programmed In C, Mathematical Software, Physics Software, Science Software
  • EPICS by Free software community

    The Experimental Physics and Industrial Control System (EPICS) is a software environment used to develop and implement distributed control systems to operate devices such as particle accelerators,...

    Latest version of EPICS is 3.14.12.5 and it was released on March 24, 2015.

    Tags: Science Software, Physics Software, Experimental Particle Physics, Industrial Automation Software
  • LONI Pipeline by Denis Trotckii, Samuel Hobel

    The LONI Pipeline is a free distributed system for designing, executing, monitoring and sharing scientific workflows on grid computing architectures. Pipeline allows users to connect and run any...

    Latest version of LONI Pipeline is 6.4 and it was released on 2016-11-01.

    Tags: Workflow Technology, Neuroimaging, Neuroimaging Software, Science Software
  • NEST by The NEST Initiative

    NEST is a simulation software for spiking neural network models, including large-scale neuronal networks. NEST was initially developed by Markus Diesmann and Marc-Oliver Gewaltig and is now...

    Latest version of NEST (Neural Simulation Tool) is 2.12.0 and it was released on 2017-03-01.

    Tags: Computational Biology, Computational Neuroscience, Simulation Software, Scientific Simulation Software, Science Software, Free Science Software
  • CNS by Axel T. Brunger and others

    CNS or Crystallography and NMR system, is a software library for computational structural biology. It is an offshoot of X-PLOR and uses much of the same syntax. It is used in the fields of X-ray...

    Latest version of CNS is 1.3 and it was released on 2010-07-22.

    Tags: Science Software, Computer Libraries
  • AKtoolbox

    AKtoolbox is a Matlab toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) and has been developed independently of Matlab Bioinformatics...

    Latest version of AKtoolbox is 1.5 and it was released on 2014-04-09.

    Tags: Science Software
  • MathMagic by InfoLogic

    MathMagic is a mathematical WYSIWYG equation editor, available for Windows, macOS, Android and iOS since its debut in 1998. MathMagic is known for its DTP quality equations and widely used by Adobe...

    Latest version of MathMagic is v9.31 for macOS, v8.31 for Windows and it was released on 2017-07-07.

    Tags: Mathematical Software, Formula Editors, Science Software, Desktop Publishing Software
  • imc FAMOS by imc Meßsysteme GmbH (integrated measurement & control), Berlin

    FAMOS is a graphical data analysis program for evaluating and visually displaying measurement results. The program, whose name is an acronym for Fast Analysis And Monitoring Of Signals, was...

    Tags: Science Software, Physics Software, Science Software For Windows, Data Analysis Software
  • Analytica by Lumina Decision Systems

    Analytica is a visual software package developed by Lumina Decision Systems for creating, analyzing and communicating quantitative decision models. As a modeling environment, it is interesting in...

    Tags: Mathematical Modeling, Mathematical Optimization Software, Science Software, Statistical Programming Languages, Visual Programming Languages, Numerical Programming Languages, Numerical Software, Array Programming Languages, Science Software For Windows, Computer Algebra Systems, Operations Research, Plotting Software, Mathematical Optimization
  • KStars by KDE developers

    KStars is a planetarium program using the KDE Platform. It can be used on most Unix-like computer operating systems, as well as on the Microsoft Windows platform using 'KDE for Windows'. It provides...

    Latest version of KStars is 2.7.8 and it was released on 2017-05-18.

    Tags: Kde Software, Astronomy Software, Free Astronomy Software, Planetarium Software For Linux, Kde Education Project, Science Education Software, Free Educational Software, Software That Uses Qt, Science Software, Linux Software, Free And Opensource Software
  • Range Software by Tomáš Šoltys

    Range Software is finite element analysis software...

    Latest version of Range Software is 2.3 and it was released on 2011.

    Tags: Computeraided Engineering Software, Engineering Software Companies, Finite Element Software, Numerical Software, Science Software, Scientific Simulation Software, Simulation Software, Specific Models, Finite Element Software For Linux
  • DataScene by Cyberwit, Inc.

    DataScene is a scientific graphing, animation, data analysis, and real-time data monitoring software package. It was developed with the Common Language Infrastructure technology and the GDI+...

    Latest version of DataScene is 3.0.7 and it was released on March 2011.

    Tags: Animation Software, Computer Animation, Data Analysis Software, Data Visualization Software, Earth Sciences Graphics Software, Educational Math Software, Financial Charts, Graphics Software, Plotting Software, Mathematical Software, Regression And Curve Fitting Software, Science Software, Statistical Charts And Diagrams, Visualization, Web Animation, Graphicsrelated Software For Linux, Science Software For Linux, Science Software For Windows
  • NOVAS by United States Naval Observatory

    The Naval Observatory Vector Astrometry Software (NOVAS) is a software library for astrometry-related numerical computations. It is developed by the Astronomical Applications Department, United...

    Latest version of NOVAS is C3.1 (C version); F3.1 (Fortran version); Python Edition 3.1.1 and it was released on March 31, 2011 (C); March 31, 2011 (FORTRAN); October 13, 2015 (Python).

    Tags: Astrometry, Astronomy Software, Science Software, Beta Software, United States Naval Observatory
  • Montage Image Mosaic Software Engine by , , ,

    Montage (full name Montage Astronomical Image Mosaic Engine) is a software toolkit used in astrophotography to assemble astronomical images in Flexible Image Transport System (FITS) format into...

    Latest version of Montage Image Mosaic Software Engine is 4.0 and it was released on 2015-09-30.

    Tags: Articles Created Via The Article Wizard, Astronomy Software, Science Software
  • MeVisLab by MeVis Medical Solutions AG,

    MeVisLab is a cross-platform application framework for medical image processing and scientific visualization. It includes advanced algorithms for image registration, segmentation, and quantitative...

    Latest version of MeVisLab is 2.8.1 and it was released on 2016-06-21.

    Tags: 1993 Software, 3d Graphics Software, Computer Vision Software, Data Visualization Software, Freeware, Image Processing Software, Science Software, Software That Uses Qt
  • ILNumerics by ILNumerics

    ILNumerics is a mathematical class library for Common Language Infrastructure (CLI) developers and a domain specific language (DSL) for the implementation of numerical algorithms on the .NET...

    Latest version of ILNumerics is v4.12 and it was released on 2016-11-11.

    Tags: 3d Graphics Software, 3d Scenegraph Apis, Array Programming Languages, C Sharp Libraries, Computer Vision Software, Data Analysis Software, Data Visualization Software, Mathematical Software, Numerical Analysis Software For Linux, Numerical Analysis Software For Macos, Numerical Analysis Software For Windows, Numerical Linear Algebra, Numerical Programming Languages, Objectoriented Programming Languages, Opengl, Parallel Computing, Science Software, Unix Programming Tools
  • tomvizcom

    tomviz is an open source software platform for reproducible volumetric visualization and data processing. The platform is designed for a wide range scientific applications but is especially tailored...

    Tags: 3d Graphics Software, 3d Imaging, Data Visualization Software, Image Processing Software, Graphics Software, Physics Software, Science Software
  • ScanIP by Synopsys

    ScanIP is a 3D image processing and model generation app developed by Synopsys Inc. to visualise, analyse, quantify, segment and export 3D image data from magnetic resonance imaging (MRI), computed...

    Latest version of ScanIP is M-2017.06 and it was released on 2017-06-05.

    Tags: Biomedical Engineering, Windows Multimedia Software, 3d Graphics Software, Mesh Generators, 3d Imaging, Image Processing Software, Nondestructive Testing, Science Software
  • Maxim DL by Cyanogen

    Maxim DL is an astronomical software created by Cyanogen Imaging for the intended purpose of astronomical imaging. The data processing comes from imaging array detectors such as CCDs. It is...

    Tags: Science Software, Astronomy Software
  • Amira by Zuse Institute Berlin,FEI Visualization Sciences Group

    Amira (pronounce: Ah-meer-ah) is a software platform for 3D and 4D data visualization, processing, and analysis. It is being actively developed by FEI Visualization Sciences Group, Bordeaux, France...

    Latest version of Amira is 6.1.1 and it was released on 2016-05-01.

    Tags: 3d Graphics Software, 3d Imaging, Computer Vision Software, Data Visualization Software, Graphics Software, Image Processing Software, Image Segmentation, Medical Software, Mesh Generators, Neuroimaging Software, Science Software, Software That Uses Qt, Virtual Reality
  • MountainsMap by Digital Surf

    MountainsMap is a surface imaging and metrology software published by the company Digital Surf. Its main application is micro-topography, the science of studying surface texture and form in 3D at...

    Latest version of MountainsMap is 7.3 and it was released on 2016-01-25.

    Tags: 1996 Software, Data Analysis Software, Science Software, Windows Graphicsrelated Software, Image Processing Software