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Scigress

Computational chemistrysimulation software

Scigress Description
Scigress, stylized SCiGRESS, is a software suite for molecular modelling, computational chemistry, drug design, and materials science, a successor to Computer Aided Chemistry (CAChe) software.
A list below shows Scigress alternatives which were either selected by us or voted for by users. You can filter this list by tags and platforms

Latest version of Scigress is 2.7(3.2) and it was released on {{Start date and age|2016|05}}.

Scigress Alternatives

  • UCSF Chimera by Resource for Biocomputing, Visualization, and Informatics (RBVI), UCSF

    UCSF Chimera (or simply Chimera) is an extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies,...

    Latest version of UCSF Chimera is 1.11.2 and it was released on 2016-12-02.

    Tags: Bioinformatics Software, Freeware, Molecular Modelling Software, Science Software
  • TreeFinder by Gangolf Jobb

    Treefinder is a computer program for the likelihood-based reconstruction of phylogenetic trees from molecular sequences. It was written by Gangolf Jobb, a former researcher at the University of...

    Latest version of TreeFinder is march2011 and it was released on 2011-03-01.

    Tags: Computational Phylogenetics, Bioinformatics Software, Science Software, Molecular Biology, Genetics
  • TCoffee by Cédric Notredame, Centro de Regulacio Genomica (CRG) - Barcelona

    T-Coffee (Tree-based Consistency Objective Function For alignment Evaluation) is a multiple sequence alignment software using a progressive approach. It generates a library of pairwise alignments to...

    Latest version of T-Coffee is 11.00.8cbe486 and it was released on 2014-08-13.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • SPAdes by St. Petersburg State University, Russia,St. Petersburg Academic University, Russia,University of California, San Diego, USA

    SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. However, it might not be suitable for large genomes...

    Latest version of SPAdes is 3.10.1 and it was released on March 1st, 2017.

    Tags: Bioinformatics Algorithms, Bioinformatics Software, Dna Sequencing, Metagenomics Software
  • SEQUEST

    SEQUEST is a tandem mass spectrometry data analysis program used for protein identification. Sequest identifies collections of tandem mass spectra to peptide sequences that have been generated from...

    Tags: Proteomics, Bioinformatics Software, Mass Spectrometry Software
  • by Bennett N.F., Ganesan N Georgetown University

    Sequerome is a web-based Sequence profiling tool for integrating the results of a BLAST sequence-alignment report with external research tools and servers that perform advanced sequence...

    Tags: Bioinformatics Software, Freeware
  • RasMol by Herbert J. Bernstein

    RasMol is a computer program written for molecular graphics visualization intended and used mainly to depict and explore biological macromolecule structures, such as those found in the Protein Data...

    Latest version of RasMol is 2.7.5.1 and it was released on 2009-07-17.

    Tags: Bioinformatics Software, Molecular Modelling Software, Free Science Software, Free Software Programmed In C, Free Educational Software
  • PICRUSt by Morgan Langille,Jesse Zaneveld,Daniel McDonald,Greg Caporaso,Gavin Douglas

    PICRUSt is a bioinformatics software package. The name is an abbreviation for Phylogenetic Investigation of Communities by Reconstruction of Unobserved States. The tool serves in the field of...

    Tags: Metagenomics, Bioinformatics Software, Environmental Microbiology
  • Phyre2 by {{Plainlist| * Lawrence Kelley * Bob Maccallum * Benjamin Jefferys * Alex Herbert * Riccardo Bennett-Lovsey *Michael Sternberg}}

    Phyre and Phyre2 (Protein Homology/AnalogY Recognition Engine; pronounced as 'fire') are web-based services for protein structure prediction that are free for non-commercial use. Phyre is among the...

    Latest version of Phyre2 is 2.0 and it was released on 2011-02-23.

    Tags: Bioinformatics Software, Computational Science
  • PHYLogeny Inference Package by University of Washington

    PHYLogeny Inference Package (PHYLIP) is a free computational phylogenetics package of programs for inferring evolutionary trees (phylogenies). It consists of 35 portable programs, i.e., the source...

    Latest version of PHYLogeny Inference Package is 3.696 and it was released on 2014-11-02.

    Tags: Computational Phylogenetics, Bioinformatics Software
  • OpenChrom by Philip Wenig, Alexander Kerner, Lorenz Gerber, Matthias Mailänder, ...

    OpenChrom is an open source software for the analysis and visualization of mass spectrometric and chromatographic data. Its focus is to handle native data files from several mass spectrometry...

    Latest version of OpenChrom is 1.2.0 and it was released on 2017-08-25.

    Tags: Bioinformatics Software, Mass Spectrometry Software, Chemistry Software For Linux, Science Software For Macos, Science Software For Windows, Chromatography Software, Eclipse Software
  • OLIGO Primer Analysis Software by Molecular Biology Insights, Inc.

    OLIGO Primer Analysis Software was the first publicly available software for DNA primer design. The first papers describing this software were published in 1989 and 1990, and consecutive upgrades in...

    Latest version of OLIGO Primer Analysis Software is 7.54 and it was released on March 23, 2011.

    Tags: Bioinformatics Software
  • MUltiple Sequence Comparison by LogExpectation by drive5

    MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is computer software for multiple sequence alignment of protein and nucleotide sequences. It is licensed as public domain. The method was...

    Latest version of MUltiple Sequence Comparison by Log-Expectation is 3.8.31 and it was released on 2016-08-18.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Modeller by University of California, San Francisco,Accelrys

    Modeller, often stylized as MODELLER, is a computer program used for homology modeling to produce models of protein tertiary structures and quaternary structures (rarer). It implements a method...

    Latest version of Modeller is 9.19 and it was released on 2017-07-25.

    Tags: Molecular Modelling Software, Bioinformatics Software, Computational Biology
  • MEGAN by Daniel Huson et al.

    MEGAN ("MEtaGenome ANalyzer") is a computer program that allows optimized analysis of large metagenomic datasets. Metagenomics is the analysis of the genomic sequences from a usually uncultured...

    Latest version of MEGAN is 6.4 and it was released on 2016.

    Tags: Metagenomics Software, Bioinformatics Software, Computational Phylogenetics, Genetics, Molecular Biology
  • Molecular Evolutionary Genetics Analysis by Pennsylvania State University

    Molecular Evolutionary Genetics Analysis (MEGA) is computer software for conducting statistical analysis of molecular evolution and for constructing phylogenetic trees. It includes many...

    Latest version of Molecular Evolutionary Genetics Analysis is 7.0.26 and it was released on {{Start date and age|2017|05}}.

    Tags: Data Visualization Software, Bioinformatics Software
  • Mascot

    Mascot is a software search engine that uses mass spectrometry data to identify proteins from peptide sequence databases. Mascot is widely used by research facilities around the world. Mascot uses a...

    Latest version of Mascot is 2.6.00 and it was released on {{Start date and age|2016|12|df=yes}}.

    Tags: Proteomics, Bioinformatics Software, Mass Spectrometry Software
  • Jmol by Jmol development team

    Jmol is computer software for molecular modelling chemical structures in 3-dimensions. Jmol returns a 3D representation of a molecule that may be used as a teaching tool, or for research e.g., in...

    Tags: Bioinformatics Software, Chemistry Software For Linux, Free Chemistry Software, Free Software Programmed In Java, Molecular Modelling Software
  • MacVector by MacVector, Inc.

    MacVector is a commercial sequence analysis application for Apple Macintosh computers running Mac OS X. It is intended to be used by molecular biologists to help analyze, design, research and...

    Latest version of MacVector is 15.5.3 and it was released on [wiki=ecb0313c48409e389f36a444b070e0da]10 July 2016[/wiki].

    Tags: Bioinformatics Software, Computational Science
  • Kepler Scientific Workflow System

    Kepler is a free software system for designing, executing, reusing, evolving, archiving, and sharing scientific workflows. Kepler's facilities provide process and data monitoring, provenance...

    Latest version of Kepler Scientific Workflow System is 2.5 and it was released on 2015-10-28.

    Tags: Workflow Technology, Bioinformatics Software
  • ITASSER by Yang Zhang Lab

    I-TASSER (Iterative Threading ASSEmbly Refinement) is a bioinformatics method for predicting three-dimensional structure model of protein molecules from amino acid sequences. It detects structure...

    Tags: Bioinformatics, Bioinformatics Software
  • HHsearch by Johannes Söding

    HHsearch is an open-source software program for protein sequence searching that is part of the free HH-suite software package. HHpred is a free protein function and protein structure prediction...

    Latest version of HHsearch is 2.0.16 and it was released on 2013-02-18.

    Tags: Bioinformatics Software, Computational Science
  • HHsuite by Johannes Söding, Michael Remmert, Andreas Biegert, Andreas Hauser, Markus Meier, Martin Steinegger

    The HH-suite is an open-source software package for sensitive protein sequence searching. It contains programs that can search for similar protein sequences in protein sequence databases. These...

    Latest version of HH-suite is 2.0.16 and it was released on 2013-02-18.

    Tags: Bioinformatics Software, Computational Science
  • geWorkbench by Columbia University,,First Genetic Trust,National Cancer Institute

    geWorkbench (genomics Workbench) is an open-source software platform for integrated genomic data analysis. It is a desktop application written in the programming language Java. geWorkbench uses a...

    Latest version of geWorkbench is 2.6.0.3 and it was released on 2016-12-21.

    Tags: Bioinformatics Software, Free Software, Cluster Analysis, Systems Biology, Protein Structure, Gene Expression
  • GenMAPP by Alexander Pico, Kristina Hanspers, Nathan Salomonis, Kam Dahlquist, Scott Doniger, Jeff Lawlor, Alex Zambon, Lynn Ferrante, Karen Vranizan, Steven C. Lawlor, Bruce Conklin

    GenMAPP (Gene Map Annotator and Pathway Profiler) is a free, open-source bioinformatics software tool designed to visualize and analyze genomic data in the context of pathways (metabolic,...

    Tags: Bioinformatics Software, Free Science Software, Systems Biology, Windowsonly Free Software
  • GENESIS

    GENESIS (The GEneral NEural SImulation System) is a simulation environment for constructing realistic models of neurobiological systems at many levels of scale including: sub-cellular processes,...

    Latest version of GENESIS is 2.4 and it was released on {{Start date and age|2014|11}}.

    Tags: 1988 Software, Bioinformatics Software, Artificial Intelligence, Software Using The Gpl License
  • GeneMark by Georgia Institute of Technology

    GeneMark is a generic name for a family of ab initio gene prediction programs developed at the Georgia Institute of Technology in Atlanta. Developed in 1993, original GeneMark was used in 1995 as a...

    Tags: Metagenomics Software, Mathematical And Theoretical Biology, Genomics, Bioinformatics Software
  • GeneNetwork by GeneNetwork Development Team, University of Tennessee

    GeneNetwork is a combined database and open source bioinformatics data analysis software resource for systems genetics. This resource is used to study gene regulatory networks that link DNA sequence...

    Latest version of GeneNetwork is 2.0 and it was released on 2017-06-02.

    Tags: Biological Databases, Systems Biology, Bioinformatics Software, Software Using The Gnu Agpl License
  • Galaxy

    Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not...

    Latest version of Galaxy is 17.01 and it was released on 2017-02-23.

    Tags: Bioinformatics Software, Free Software Projects, Workflow Software
  • FastPCR

    FastPCR is an integrated tool for PCR primers or probes design, in silico PCR, oligonucleotide assembly and analyses, alignment and repeat...

    Tags: Bioinformatics, Bioinformatics Software, Polymerase Chain Reaction
  • DAVID Bioinformatics Resources by Laboratory of Immunopathogenesis and Bioinformatics

    DAVID (the Database for Annotation, Visualization and Integrated Discovery) is a free online url=://david.abcc.ncifcrf.gov The DAVID Bioinformatics Resources consists of the DAVID Knowledgebase and...

    Latest version of DAVID Bioinformatics Resources is 6.7 and it was released on 2010-01-27.

    Tags: Biological Databases, Bioinformatics Software, Laboratory Software, Systems Biology
  • CSBLAST by Angermueller C, Biegert A, and Soeding J

    CS-BLAST (Context-Specific BLAST) is a tool that searches a protein sequence that extends BLAST (Basic Local Alignment Search Tool), (Basic Local Alignment Search Tool) using context-specific...

    Latest version of CS-BLAST is 2.2.3 and it was released on 2013-12-07.

    Tags: Bioinformatics Software, Computational Science
  • cTAKES by Apache Software Foundation

    Apache cTAKES: clinical Text Analysis and Knowledge Extraction System is an open-source natural language processing system for information extraction from electronic health record clinical...

    Tags: Apache Software Foundation Projects, Electronic Health Record Software, Natural Language Processing Software, Free Healthcare Software, Bioinformatics Software
  • Coot by Paul Emsley,Kevin D. Cowtan

    The program Coot (Crystallographic Object-Oriented Toolkit) is used to display and manipulate atomic models of macromolecules, typically of proteins or nucleic acids, using 3D computer graphics. It...

    Latest version of Coot is 0.8.7 and it was released on 2016-11-08.

    Tags: Crystallography Software, Molecular Modelling Software, Bioinformatics Software, Free Science Software, Free Chemistry Software, Science Software That Uses Gtk, Science Software For Linux
  • Chemistry Development Kit by The CDK Project

    The Chemistry Development Kit (CDK) is computer software, a library in the programming language Java, for chemoinformatics and bioinformatics. It is available for Windows, Linux, Unix, and macOS. It...

    Tags: Bioinformatics Software, Chemistry Software For Linux, Computational Chemistry Software, Free Chemistry Software, Free Software Programmed In Java
  • Biopython

    The Biopython Project is an open-source collection of non-commercial Python tools for computational biology and bioinformatics, created by an international association of developers. It contains...

    Latest version of Biopython is 1.70 and it was released on 2017-07-11.

    Tags: Articles With Example Python Code, Bioinformatics Software, Computational Science, Python Scientific Libraries
  • BioPerl

    BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral role in the Human Genome...

    Latest version of BioPerl is 1.6.924 and it was released on 2014-07-10.

    Tags: Bioinformatics Software, Perl Software, Free Bioinformatics Software
  • BioJava

    BioJava is an open-source software project dedicated to provide Java tools to process biological data. BioJava is a set of library functions written in the programming language Java for manipulating...

    Latest version of BioJava is 4.2.1 and it was released on 2016-01-15.

    Tags: Bioinformatics Software, Java Platform Software
  • Bioconductor

    Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. Bioconductor is...

    Latest version of Bioconductor is 3.5 and it was released on 2017-04-25.

    Tags: Bioinformatics Software, Free Bioinformatics Software, Free Science Software, Free R Software, Science Software For Macos, Science Software For Windows, Science Software For Linux
  • Bioclipse by The Bioclipse Project

    The Bioclipse project is a Java-based, open source, visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). It gained scripting functionality in 2009. Like...

    Tags: Bioinformatics Software, Cheminformatics, Java Platform Software, Free Chemistry Software
  • BioBIKE

    BioBike(nee. BioLingua ) is a cloud-based, through-the-web programmable (Paas) symbolic biocomputing and bioinformatics platform that aims to make computational biology, and especially intelligent...

    Tags: Bioinformatics Software, Free Software Projects, Cloud Computing, Cloud Platforms
  • BioloMICS by BioAware SA NV

    BioloMICS is a bioinformatics software application developed by the company BioAware SA NV. It is tool allowing specialized and scientific biological databases to be created to fit the specific...

    Tags: Bioinformatics Software, Biological Databases
  • BALL project by BALL project team

    BALL (pronounced "ball") is computer software consisting of the versatile C++ class framework Biochemical Algorithms Library (BALL), a set of algorithms and data structures for molecular modelling...

    Latest version of BALL project is 1.4.2 and it was released on 2013-01-28.

    Tags: C Libraries, Computational Chemistry Software, Molecular Modelling Software, Bioinformatics Software, Free Bioinformatics Software, Chemistry Software For Linux, Science Software That Uses Qt, Articles With Example C Code
  • ArrayTrack by U.S. Food and Drug Administration

    ArrayTrack is a multi-purpose bioinformatics tool primarily used for microarray data management, analysis, and interpretation. ArrayTrack was developed to support in-house filter array research for...

    Latest version of ArrayTrack is 3.5.0 and it was released on 2010-03-03.

    Tags: Bioinformatics Software, Microarrays
  • BAliPhy by Benjamin Redelings

    BAli-Phy is a free software program for simultaneously estimating a multiple sequence alignment and its phylogenetic tree. BAli-Phy achieves high accuracy in alignment estimation by using...

    Latest version of BAli-Phy is 2.3.8 and it was released on {{release date and age|16|1|30|df=yes}}.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Anduril by University of Helsinki

    Anduril is an open source component-based workflow framework for scientific data analysis developed at the Systems Biology Laboratory, University of Helsinki. Anduril is designed to enable...

    Latest version of Anduril is 1.2.23 and it was released on 2014-06-24.

    Tags: Workflow Technology, Bioinformatics Software
  • Pipeline Pilot by Accelrys

    Pipeline Pilot is the authoring tool for the Accelrys Enterprise Platform. It is a scientific visual and dataflow programming language, used in various scientific domains, such as cheminformatics...

    Latest version of Pipeline Pilot is 8.5 CU3 and it was released on {{Start date|2012|05||df=yes/no}}.

    Tags: Science Software, Enterprise Application Integration, Extract Transform Load Tools, Bioinformatics Software, Computational Chemistry Software, Computer Vision Software, Data Analysis Software, Data Mining And Machine Learning Software, Data Visualization Software, Laboratory Software, Mass Spectrometry Software, Natural Language Processing Software, Numerical Software, Plotting Software, Proprietary Software, Visual Programming Languages, Articles Created Via The Article Wizard
  • XRATE by Ian Holmes (UC Berkeley)

    XRATE is a program for prototyping phylogenetic hidden Markov models and stochastic context-free grammars. It is used to discover patterns of evolutionary conservation in sequence alignments. The...

    Tags: Bioinformatics Software
  • WHAT IF by University of Groningen;,EMBL,Heidelberg;,CMBI,Radboud University Nijmegen;,Radboud University Nijmegen Medical Centre (Radboudumc),WHAT IF Foundation

    WHAT IF is a computer program used in a wide variety of computational (in silico) macromolecular structure research fields. The software provides a flexible environment to display, manipulate, and...

    Latest version of WHAT IF is 6.0 and it was released on {{Start date and age|2016|df=yes}}.

    Tags: Molecular Modelling Software, Bioinformatics Software, Protein Structure
  • ViennaRNA Package by Institut für theoretische Chemie, Währingerstr

    The ViennaRNA Package is a set of standalone programs and libraries used for prediction and analysis of RNA secondary structures. The source code for the package is distributed freely and compiled...

    Latest version of ViennaRNA Package is v2.3.3 and it was released on 2017-01-24.

    Tags: Bioinformatics Software, Bioinformatics Algorithms, Computational Biology
  • Vector NTI by Life Technologies

    Vector NTI is a commercial bioinformatics software package used by many life scientists to work, among other things, with nucleic acids and proteins in silico .]It]allows researchers to, for...

    Latest version of Vector NTI is Vector NTI Express v1.1.1 (Mac & Windows); Vector NTI Advance v11.5.2 (Windows & Mac w/PC Emulation) and it was released on 2012-09-20.

    Tags: Bioinformatics Software
  • TPP by Institute for Systems Biology

    The Trans-Proteomic Pipeline (TPP) is an open-source data analysis software for proteomics developed at the Institute for Systems Biology (ISB) by the Ruedi Aebersold group under the Seattle...

    Latest version of TPP is 5.0.0 and it was released on 2016-10-11.

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Health Sciences
  • taveRNA by Simon Fraser University

    taveRNA is a software suite for RNA/DNA secondary structure. It is developed in the laboratories for computational biology of the School of Computing Science at the Simon Fraser University. The...

    Tags: Bioinformatics Software, Simon Fraser University
  • TimeTree

    TimeTree is a free public database developed by S. Blair Hedges and Sudhir Kumar, now at Temple University, for presenting times of divergence in the tree of life. The basic concept has been to...

    Tags: Bioinformatics Software
  • Staden Package by James Bonfield, et al.

    The Staden Package is computer software, a set of tools for DNA sequence assembly, editing, and sequence analysis. It is open-source software, released under a BSD 3-clause...

    Latest version of Staden Package is 2.0.0b9 and it was released on 2012-01-24.

    Tags: Bioinformatics Software, Computational Science
  • Sirius by San Diego Supercomputer Center

    Sirius is a molecular modelling and analysis system developed at San Diego Supercomputer Center. Sirius is designed to support advanced user requirements that go beyond simple display of small...

    Latest version of Sirius is 1.2 and it was released on 2008-11-18.

    Tags: Molecular Modelling Software, Bioinformatics Software
  • ShelXle by Christian B. Hübschle

    The program ShelXle is a graphical user interface for the structure refinement program SHELXL. ShelXle combines an editor with syntax highlighting for the SHELXL-associated .ins (input) and .res...

    Latest version of ShelXle is 1.0.825 and it was released on 2017-01-28.

    Tags: Crystallography Software, Molecular Modelling Software, Bioinformatics Software, Free Science Software
  • SeqCorator by NoeGen Inc.

    SeqCorator is a bioinformatics software which can run in multiple operating systems (Windows, Mac OS, Unix/Linux) with the same...

    Latest version of SeqCorator is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • QuteMol by ISTI,CNR

    QuteMol is an open source, interactive, molecular visualization system. QuteMol utilizes the current capabilities of modern GPUs through OpenGL shaders to offer an array of innovative visual...

    Latest version of QuteMol is 0.4.1 and it was released on 2007-06-06.

    Tags: Molecular Modelling Software, Free Science Software, Chemistry Software For Linux, Free 3d Graphics Software, Free Software Programmed In C, Bioinformatics Software, Software That Uses Wxwidgets
  • ProteoWizard

    ProteoWizard is a set of open-source, cross-platform tools and libraries for proteomics data analyses. It provides a framework for unified mass spectrometry data file access and performs standard...

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Software Using The Apache License
  • PrimerPlex by PREMIER Biosoft

    PrimerPlex designs oligos for standard multiplex PCR assays and for bead-based suspension array systems such as BioPlex-200 and Luminex 100/200 based on xMAP technology. The assays are used for...

    Tags: Bioinformatics Software
  • Primer Premier by Premier Biosoft

    Primer Premier software combines design of primers for various PCR applications under one common platform. The software supports design of degenerate primers on alignments for amplifying related set...

    Tags: Bioinformatics Software
  • Phyloscan by Wadsworth Center, New York State Department of Health

    Phyloscan is a web service for DNA sequence analysis that is free and open to all users (without login requirement). For locating matches to a user-specified sequence motif for a regulatory binding...

    Latest version of Phyloscan is 2.2 and it was released on 2010-01-28.

    Tags: Bioinformatics, Bioinformatics Software, Computational Science
  • Phylogenetic Analysis Using Parsimony and other methods

    PAUP* (Phylogenetic Analysis Using Parsimony *and other methods) is a computational phylogenetics program for inferring evolutionary trees (phylogenies), written by David L. Swofford. Originally, as...

    Tags: Computational Phylogenetics, Bioinformatics Software
  • NoePrimer by NoeGen Inc.

    NoePrimer is a bioinformatics software which can run in multiple operating systems (windows, Mac OS, Unix/Linux) with the same...

    Latest version of NoePrimer is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • Newbler by 454 Life Sciences

    Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life...

    Latest version of Newbler is v2.7 and it was released on 2012-02-28.

    Tags: Bioinformatics Software, Computational Science
  • Metascape Bioinformatics Resources by Sanford Burnham, UCSD, GNF

    Metascape is a free gene annotation and analysis resource that helps biologists make sense of one or multiple gene lists. Metascape provides automated meta-analysis tools to understand either common...

    Latest version of Metascape Bioinformatics Resources is 3.0 and it was released on 2016-11-02.

    Tags: Biological Databases, Bioinformatics Software, Laboratory Software, Systems Biology
  • Mesquite A modular system for evolutionary analysis

    Mesquite is a software package primarily designed for phylogenetic analyses. It was developed as a successor to MacClade, when the authors recognized that implementing a modular architecture in...

    Latest version of Mesquite: A modular system for evolutionary analysis is 3.2 and it was released on 2017-01-01.

    Tags: Computational Phylogenetics, Bioinformatics Software, Phylogenetics
  • Mega2 by Daniel E. Weeks, Robert V. Baron, Justin R. Stickel.

    Mega2 (short for manipulation environment for genetic analysis) allows the applied statistical geneticist to convert one's data from several input formats to a large number output formats suitable...

    Latest version of Mega2 is 4.9.2 and it was released on 2017-06-13.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • MAVID by Nicolas Bray (UC Berkeley), Lior Pachter (UC Berkeley)

    MAVID is a multiple sequence alignment program suitable for the alignment of large numbers of DNA sequences. The sequences can be small mitochondrial genomes or large genomic regions up to megabases...

    Tags: Bioinformatics Software, Computational Phylogenetics
  • LabKey Server by LabKey

    LabKey Server is free, open source software available for scientists to integrate, analyze, and share biomedical research data. The platform provides a secure data repository that allows web-based...

    Latest version of LabKey Server is 17.2 and it was released on 2017-07-14.

    Tags: Bioinformatics Software, Free Bioinformatics Software, Free Science Software, Mass Spectrometry Software, Proteomics, Science Software For Windows, Science Software For Linux, Science Software For Macos
  • Jalview by Andrew Waterhouse, James Procter, David Martin and Geoffrey Barton at the University of Dundee.,Original version by Michele Clamp, James Cuff, Stephen Searle, Geoffrey Barton.

    Jalview is a piece of bioinformatics software that is used to look at and edit multiple sequence alignments. It is written in the Java programming language. The programme was originally written by...

    Latest version of Jalview is 2.10.1 and it was released on 2016-11-29.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Integrated Genome Browser

    Integrated Genome Browser (IGB) (pronounced Ig-Bee) is an open source genome browser, a visualization tool used to observe biologically-interesting patterns in genomic data sets, including sequence...

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • IMOD by David Mastronarde et al. at the Boulder Laboratory for 3-D Electron Microscopy of Cells

    IMOD is an open-source, cross-platform suite of modeling, display and image processing programs used for 3D reconstruction and modeling of microscopy images with a special emphasis on electron...

    Latest version of IMOD is 4.3.7 and it was released on February 23, 2012.

    Tags: Bioinformatics Software, Science Software, Freeware
  • HyPhy by Sergei L Kosakovsky Pond, Art FY Poon, Steven Weaver, N. Lance Hepler, Martin Smith.

    HYPHY is a free multiplatform (Mac, Windows and UNIX) Computational phylogenetics software package intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to...

    Latest version of HyPhy is June, 2012 and it was released on 2012-06-21.

    Tags: Computational Phylogenetics, Bioinformatics Software
  • GESS by NCSS, LLC

    GESS is a computer program for analyzing gene expression data obtained from microarrays. NCSS LLC is the name of the company that produces GESS. NCSS LLC also produces PASS (Power Analysis and...

    Latest version of GESS is GESS 2006 and it was released on May, 2006.

    Tags: Bioinformatics Software, Microarrays
  • GENtle by Magnus Manske

    GENtle is a free software under GPL...

    Latest version of GENtle is 1.9.0 and it was released on 2006-04-07.

    Tags: Bioinformatics Software, Free Science Software, Science Software For Linux, Software That Uses Wxwidgets
  • GenomeSpace by Broad Institute

    GenomeSpace is an environment for genomics software tools and applications. It helps users manage their analysis workflows involving multiple diverse tools, including web applications and desktop...

    Latest version of GenomeSpace is beta 5.0 and it was released on {{Start date and age|2012|04}}.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • GenGIS by Donovan Parks, Mike Porter, Timothy Mankowski, Suwen Wang, Sylvia Churcher, Alex Keddy, Christian Blouin, Jacqueline Whalley, Stephen Brooks, Rob Beiko

    GenGIS merges geographic, ecological and phylogenetic biodiversity data in a single interactive visualization and analysis environment. A key feature of GenGIS is the testing of geographic axes that...

    Latest version of GenGIS is 2.4.1 and it was released on 2015.

    Tags: Bioinformatics Software, Biogeography, Genetics, Molecular Biology
  • GenePattern by Broad Institute

    GenePattern is a freely available computational biology open-source software package developed at the Broad Institute of MIT and Harvard for the analysis of genomic data. Designed to enable...

    Latest version of GenePattern is 3.9.8 and it was released on June 2016.

    Tags: Bioinformatics Software, Dna Sequencing, Gene Expression
  • Gene Designer by DNA2.0

    Gene Designer is a computer software package for bioinformatics. It is used by molecular biologists from academia, government, and the pharmaceutical, chemical, agricultural, and biotechnology...

    Latest version of Gene Designer is 2.01.191 and it was released on 2015-10-09.

    Tags: Bioinformatics, Bioinformatics Software
  • Foldit by University of Washington, Center for Game Science, Department of Biochemistry

    Foldit is an online puzzle video game about protein folding. It is part of an experimental research project developed by the University of Washington, Center for Game Science, in collaboration with...

    Tags: 2008 Video Games, Linux Games, Macos Games, Windows Games, Puzzle Video Games, Humanbased Computation Games, Luascripted Video Games, Bioinformatics Software, Computational Biology, Molecular Biology, Protein Folding, Protein Structure, Gamification
  • FlyExpress

    FlyExpress is a free database that collects the expression patterns of Drosophila melanogaster in embryogenesis via a series of images submitted from BDGP, Fly-FISH and publications from other...

    Tags: Insect Developmental Biology, Model Organism Databases, Bioinformatics Software
  • FASTA by Pearson W.R.

    FASTA is a DNA and protein sequence alignment software package first described (as FASTP) by David J. Lipman and William R. Pearson in 1985. Its legacy is the FASTA format which is now ubiquitous in...

    Tags: Computational Phylogenetics, Bioinformatics Software
  • esyN

    esyN (Easy Networks) is an open source bioinformatics web-tool for visualizing, building and analysing molecular interaction networks. esyN is based on cytoscape.js and its aim is to make it easy...

    Latest version of esyN (Easy Networks) is 2.1 and it was released on 2016-01-17.

    Tags: Bioinformatics Software, Proteomics, Metabolomic Databases, Free Software
  • eMovie by Israel Structural Proteomics Center

    eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of...

    Tags: Molecular Modelling Software, Data Visualization Software, Bioinformatics Software
  • DNADynamo by BlueTractorSoftware Ltd

    DNADynamo is a commercial DNA sequence analysis software package produced by Blue Tractor Software Ltd that runs on Microsoft Windows, Mac OS X and Linux It is used by molecular biologists to...

    Tags: Bioinformatics Software, Computational Science
  • DECIPHER by Erik Wright

    Decipher, stylized as DECIPHER, is a software toolset that can be used to decipher and manage biological sequences efficiently using the programming language R. Some functions of the program are...

    Latest version of DECIPHER is 2.2.0 and it was released on {{Start date and age|2016}}.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Cytoscape

    Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression profiles and other state data. Additional features...

    Latest version of Cytoscape is 3.5.1 and it was released on 2017-04-26.

    Tags: Bioinformatics Software, Systems Biology, Mathematical And Theoretical Biology, Graph Drawing Software, Crossplatform Software, Java Platform Software
  • CLUSTAL by {{Plainlist| * Des Higgins * Fabian Sievers * David Dineen * Andreas Wilm (all at the Conway Institute, UCD)}}

    Clustal is a series of widely used computer programs used in Bioinformatics for multiple sequence...

    Latest version of CLUSTAL is 1.2.2 and it was released on 2016-07-01.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • CheShift2

    CheShift-2 (pronounced /tʃeʃɪft/) is an application created to compute 13Cα and 13Cβ protein chemical shifts and to validate protein structures. It is based on quantum mechanics computations of 13Cα...

    Latest version of CheShift-2 is 3.0 and it was released on 2013-09-01.

    Tags: Bioinformatics Software
  • Budapest Reference Connectome by Balázs Szalkai, Csaba Kerepesi, Bálint Varga, Vince Grolmusz

    The Budapest Reference Connectome server computes the frequently appearing anatomical brain connections of 418 healthy subjects. It has been prepared from diffusion MRI datasets of the Human...

    Tags: Computational Neuroscience, Neuroscience, Neuroinformatics, Bioinformatics, Bioinformatics Software, Free Bioinformatics Software
  • BLAT by Jim Kent,UCSC

    BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the...

    Tags: Bioinformatics Software, Laboratory Software
  • Biskit by Raik Grünberg, Johan Leckner, and others

    Biskit is an open source software package written in Python. The package facilitates research in Structural bioinformatics and molecular modelling. Biskit falls into two parts: * an Object-oriented...

    Tags: Bioinformatics Software, Molecular Modelling, Physics Software, Computational Chemistry Software, Free Science Software, Free Software Programmed In Python, Molecular Dynamics
  • BioPHP

    BioPHP is a collection of open source PHP code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other bioinformatics tools. BioRuby is released under the GNU GPL...

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • BioRuby

    BioRuby is a collection of Open Source Ruby code, comprising classes for computation molecular biology and bioinformatics. It contains classes for DNA and protein sequence analysis, sequence...

    Latest version of BioRuby is 1.5.0 and it was released on 2015-07-01.

    Tags: Bioinformatics Software, Free Bioinformatics Software
  • BioMart

    BioMart is a community-driven project to provide a single point of access to distributed research data. The BioMart project contributes open source software and data services to the international...

    Tags: Bioinformatics Software, Free Software Projects, Biological Databases, Data Warehousing Products
  • BioNumerics by Applied Maths N.V.

    BioNumerics is a suite of bioinformatics software applications developed by the company Applied Maths...

    Tags: Bioinformatics Software
  • Bioinformatic Harvester by Urban Liebel, Björn Kindler

    The Bioinformatic Harvester was a bioinformatic meta search engine created by the European Molecular Biology Laboratory and subsequently hosted and further developed by KIT Karlsruhe Institute of...

    Latest version of Bioinformatic Harvester is 4 and it was released on 2011-05-24.

    Tags: Bioinformatics Software, Biological Databases, Internet Search Engines, Biology Websites
  • Beacon Designer by Premier Biosoft

    Beacon Designer designs highly specific and efficient primers and probes for real time PCR (polymerase chain reaction) assays. It is compatible to work on Windows as well as on Mac. The software...

    Latest version of Beacon Designer is 7.9 and it was released on [wiki=58c032d8e88b253d5577448141ed2384]17 June 2010[/wiki].

    Tags: Bioinformatics Software
  • Archaeopteryx by Christian M. Zmasek

    Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees. This type of program can be used for a variety of analyses of...

    Latest version of Archaeopteryx is 0.972+ beta 9M and it was released on 2012.08.08.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • AMPHORA by Martin Wu, Jonathan Eisen et al.

    AMPHORA ("AutoMated Phylogenomic infeRence Application") is an open-source bioinformatics workflow. AMPHORA2 uses 31 bacterial and 104 archaeal phylogenetic marker genes for inferring phylogenetic...

    Latest version of AMPHORA is 2.0 and it was released on 2013.

    Tags: Metagenomics Software, Bioinformatics Software, Free Bioinformatics Software, Computational Phylogenetics, Free Science Software
  • Abalone by Agile Molecule

    Abalone is a general purpose molecular dynamics and molecular graphics program for simulations of bio-molecules in a periodic boundary conditions in explicit (flexible SPC water model) or in...

    Latest version of Abalone is 1.9.0 and it was released on 2016-05-17.

    Tags: Science Software, Molecular Modelling Software, Molecular Dynamics Software, Monte Carlo Software, Bioinformatics Software, Computational Chemistry Software
  • AMAP by Ariel Schwartz (UC Berkeley), Lior Pachter (UC Berkeley)

    AMAP is a multiple sequence alignment program based on a new approach to multiple alignment called sequence annealing. This approach consists of building up the multiple alignment one match at a...

    Tags: Bioinformatics Software
  • AlleleID by PREMIER Biosoft

    AlleleID designs oligos for strain differentiation and taxa specific assays. This aids in bacterial identification, pathogen detection and species identification. The software is designed to run on...

    Latest version of AlleleID is 7.80 and it was released on 29 June 2013.

    Tags: Bioinformatics Software
  • Stemloc by Ian Holmes (UC Berkeley)

    Stemloc is a program for pairwise RNA structural alignment based on probabilistic models of RNA structure known as Pair stochastic context-free grammars. Stemloc implements constrained versions of...

    Tags: Bioinformatics Software
  • SplitsTree by Daniel Huson and David Bryant

    SplitsTree is a popular program for inferring phylogenetic trees or, more generally, phylogenetic networks from various types of data such as a sequence alignment, a distance matrix or a set of...

    Latest version of SplitsTree is 4.14.4 and it was released on 2008.

    Tags: Bioinformatics Software, Computational Phylogenetics, Genetics, Molecular Biology
  • RAPTOR by Bioinformatics Solutions Inc.

    RAPTOR is protein threading software used for protein structure prediction. It has been replaced by RaptorX, which is much more accurate than...

    Latest version of RAPTOR is 4.2 and it was released on {{Start date and age|2008|11}}.

    Tags: Bioinformatics Software, Molecular Modelling Software
  • NoeClone by NoeGen Inc.

    NoeClone is a bioinformatics software which can run in multiple operating systems (Windows, Mac OS, Unix/Linux) with the same...

    Latest version of NoeClone is 2.01 and it was released on 2009.

    Tags: Bioinformatics Software
  • MAFFT by Kazutaka Katoh

    In bioinformatics, MAFFT is a multiple sequence alignment program for amino acid or nucleotide sequences. The software is named after the acronym Multiple Alignment using Fast Fourier Transform...

    Latest version of MAFFT is 7.299 and it was released on 2016-06-28.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Handel by Ian Holmes (UC Berkeley)

    Handel is a suite of programs for multiple sequence alignment. Since it is based on a model of DNA sequence evolution that explicitly incorporates insertion and deletion events, it effectively...

    Tags: Bioinformatics Software
  • Giant Virus Finder by Csaba Kerepesi

    The Giant Virus Finder is a free bioinformatics software for finding giant viruses in...

    Tags: Metagenomics Software, Bioinformatics Software, Free Bioinformatics Software, Free Science Software
  • GENSCAN by Christopher Burge

    In bioinformatics GENSCAN is a program to identify complete gene structures in genomic DNA. It is a GHMM-based program that can be used to predict the location of genes and their exon-intron...

    Tags: Bioinformatics Software
  • Dendroscope by Daniel Huson et al.

    Dendroscope is an interactive computer software program written in Java for viewing Phylogenetic trees. This program is designed to view trees of all sizes and is very useful for creating figures....

    Latest version of Dendroscope is 3.2.10 and it was released on 2013.

    Tags: Bioinformatics Software, Computational Phylogenetics
  • Apache Taverna by Apache Software Foundation (myGrid for 2.x)

    Apache Taverna is an open source software tool for designing and executing workflows, initially created by the myGrid project under the name Taverna Workbench, now a project under the Apache...

    Latest version of Apache Taverna is 2.5 and it was released on 2014-04-16.

    Tags: Workflow Technology, Bioinformatics Software, School Of Computer Science University Of Manchester, Workflow Software, Apache Software Foundation, Apache Software Foundation Projects, Software Using The Apache License
  • BLAST by Altschul SF,Gish W,Miller W,Myers EW,Lipman DJ,NCBI

    In bioinformatics, BLAST for Basic Local Alignment Search Tool is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of proteins or the nucleotides...

    Latest version of BLAST is 2.6.0+ and it was released on 2016-12-07.

    Tags: Bioinformatics Algorithms, Computational Phylogenetics, Bioinformatics Software, Laboratory Software, Publicdomain Software
  • HMMER by Sean Eddy, Travis Wheeler, HMMER development team

    HMMER is a free and commonly used software package for sequence analysis written by Sean Eddy. Its general usage is to identify homologous protein or nucleotide sequences, and to perform sequence...

    Latest version of HMMER is 3.0 and it was released on 2010-03-28.

    Tags: Bioinformatics Software, Free Science Software, Free Software Programmed In C, Computational Science
  • MorphoBank by The MorphoBank Project

    MorphoBank is a web application for collaborative evolutionary research, specifically phylogenetic systematics or cladistics, on the phenotype. Historically, scientists conducting research on...

    Tags: Web Applications, Bioinformatics Software
  • OpenMS

    OpenMS is an open-source project for data analysis and processing in protein mass spectrometry and is released under the 3-clause BSD licence. It supports most common operating systems including...

    Latest version of OpenMS is 2.1.0 and it was released on 2016-11-22.

    Tags: Free Science Software, Bioinformatics Software, Mass Spectrometry Software, Proteomics, Software Using The Bsd License
  • UGENE by Unipro

    UGENE is computer software for bioinformatics. It works on desktop computer operating systems such as Windows, macOS, or Linux. It is released as free and open-source software, under a GNU General...

    Latest version of UGENE is 1.27 and it was released on 2017-08-23.

    Tags: Bioinformatics Software, Free Science Software, Free Software Programmed In C, Computational Science
  • The Unscrambler X

    The Unscrambler® X is a commercial software product for multivariate data analysis, used for calibration of multivariate data which is often in the application of analytical data such as near...

    Latest version of The Unscrambler® X is 10.1 and it was released on January 2011.

    Tags: Statistical Software, Computational Chemistry, Spectroscopy
  • Foldinghome by Pande Laboratory, Sony,Nvidia,ATI, Cauldron Development

    Folding@home (FAH or F@h) is a distributed computing project for disease research that simulates protein folding, computational drug design, and other types of molecular dynamics. The project uses...

    Latest version of Folding@home is 7.4.4 and it was released on 2014-03-19.

    Tags: Computerrelated Introductions In 2000, Bioinformatics, Computational Biology, Computational Chemistry, Crossplatform Software, Data Mining And Machine Learning Software, Distributed Computing Projects, Hidden Markov Models, Mathematical And Theoretical Biology, Molecular Dynamics Software, Molecular Modelling, Molecular Modelling Software, Playstation 3 Software, Proprietary Crossplatform Software, Protein Folds, Protein Structure, Simulation Software, Stanford University, Medical Technology, Medical Research Organizations, Science Software For Linux, Science Software For Macos, Science Software For Windows
  • TeraChem by PetaChem

    TeraChem is the first computational chemistry software program written completely from scratch to benefit from the new streaming processors such as graphics processing units (GPUs). The...

    Latest version of TeraChem is 1.9 and it was released on 2016-06-15.

    Tags: Molecular Modelling, Computational Chemistry, Computational Chemistry Software, Electronic Structure Methods
  • Yambo by Conor Hogan, Myrta Gruning, Daniele Varsano, Davide Sangalli, Andrea Ferretti, Pedro Melo, Ryan McMillan, Fabio Affinito, Alejandro Molina-Sanchez, Henrique Miranda

    Yambo is a computer software package for studying many-body theory aspects of solids and molecule systems. It calculates the excited state properties of physical systems from first principles, e.g.,...

    Latest version of Yambo is 4.1.2 and it was released on 2016-12-20.

    Tags: Physics Software, Computational Chemistry Software, Free Physics Software
  • PLATO

    PLATO (Package for Linear-combination of ATomic Orbitals) is a suite of programs for electronic structure calculations. It receives its name from the choice of basis set (numeric atomic orbitals)...

    Tags: Computational Chemistry Software
  • ORCA by Frank Neese

    ORCA (Quantum Chemistry Program) is an ab initio quantum chemistry program package that contains modern electronic structure methods including density functional theory, many-body perturbation,...

    Tags: Computational Chemistry Software
  • Open Babel by Open Babel development team

    Open Babel is computer software, a chemical expert system mainly used to interconvert chemical file formats. Due to the strong relationship to informatics this program belongs more to the category...

    Latest version of Open Babel is 2.4.0 and it was released on 2016-09-25.

    Tags: Computational Chemistry Software, Free Chemistry Software, Free Software Programmed In C, Chemistry Software For Linux, Software That Uses Wxwidgets
  • MOE by Chemical Computing Group

    Molecular Operating Environment (MOE) is a drug discovery software platform that integrates visualization, modeling and simulations, as well as methodology development, in one package. MOE...

    Tags: Molecular Modelling Software, Chemistry Software For Linux, Computational Chemistry Software
  • Molden

    Molden is a general molecular and electronic structure processing...

    Latest version of Molden is 5.0.6 and it was released on 2013-04-09.

    Tags: Molecular Modelling Software, Computational Chemistry Software, Chemistry Software For Linux
  • JOELib by JOELib development team

    JOELib is computer software, a chemical expert system used mainly to interconvert chemical file formats. Because of its strong relationship to informatics, this program belongs more to the category...

    Latest version of JOELib is 2007-03-03 and it was released on 2007-03-03.

    Tags: Free Science Software, Free Software Programmed In Java, Computational Chemistry Software, Science Software For Linux
  • Ghemical

    Ghemical is a computational chemistry software package written in C++ and released under the GNU General Public License. The program has graphical user interface based on GTK+2 and supports quantum...

    Tags: Computational Chemistry Software, Free Software Programmed In C, Free Chemistry Software, Free Educational Software, Science Software That Uses Gtk
  • GAMESSUK by Computing for Science Ltd.,CCLRC Daresbury Laboratory

    General Atomic and Molecular Electronic Structure System (GAMESS-UK) is a computer software program for computational chemistry. The original code split in 1981 into GAMESS-UK and GAMESS (US)...

    Latest version of GAMESS-UK is 7.0 and it was released on 2010-01-01.

    Tags: Computational Chemistry Software, Science And Technology Facilities Council, Science And Technology In Cheshire
  • FreeON

    FreeON is an experimental, open source (GPL) suite of programs for linear scaling quantum chemistry, formerly known as MondoSCF. It is highly modular, and has been written from scratch for N-scaling...

    Latest version of FreeON is 1.0.8 and it was released on 2013-11-08.

    Tags: Computational Chemistry Software
  • Gabedit by A.R. ALLOUCHE

    Gabedit is a Graphical User Interface to GAMESS (US), Gaussian, MOLCAS, MOLPRO, MPQC, OpenMopac, PC GAMESS, Orca and Q-Chem computational chemistry...

    Latest version of Gabedit is 2.4.8 and it was released on 2014-02-07.

    Tags: Computational Chemistry Software, Scientific Software That Uses Gtk, Free Chemistry Software, Chemistry Software For Linux
  • Firefly by Moscow State University, Chemistry Department

    Firefly, formerly named PC GAMESS, is an ab initio computational chemistry program for Intel-compatible x86, x86-64 processors based on GAMESS (US) sources. However, it has been mostly rewritten...

    Latest version of Firefly is 8.1.1 and it was released on 2015-09-03.

    Tags: Computational Chemistry Software
  • Extensible Computational Chemistry Environment by Pacific Northwest National Laboratory

    The Extensible Computational Chemistry Environment (ECCE, pronounced "etch-ā") provides a sophisticated graphical user interface, scientific visualization tools, and the underlying data management...

    Latest version of Extensible Computational Chemistry Environment (ECCE) is 7.0 and it was released on 2013-08-01.

    Tags: Molecular Modelling Software, Computational Chemistry Software
  • CP2K

    CP2K is a freely available (GPL) program, written in Fortran 2003, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general...

    Latest version of CP2K is 4.1 and it was released on 2016-10-05.

    Tags: Free Physics Software, Free Software Programmed In Fortran, Density Functional Theory Software, Computational Chemistry Software, Free Chemistry Software, Chemistry Software For Linux
  • Chemicalize by ChemAxon

    Chemicalize is an online platform for chemical calculations, search, and text processing. It is developed and owned by ChemAxon and offers various cheminformatics tools in freemium model: chemical...

    Tags: Computational Chemistry Software, Chemical Databases
  • Avogadro

    Avogadro is a molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It is extensible...

    Latest version of Avogadro is Avogadro 1.2 and it was released on 2016-06-15.

    Tags: Free Chemistry Software, Free Software Programmed In C, Molecular Modelling Software, Computational Chemistry Software, Science Software That Uses Qt, Chemistry Software For Linux
  • aqion

    Aqion is a hydrochemistry software tool. It bridges the gap between scientific software (such like PhreeqC) and the calculation/handling of "simple" water-related tasks in daily routine practice....

    Latest version of aqion is version 6.3 and it was released on May 2017.

    Tags: Computational Chemistry Software, Science Education Software
  • ICMBrowser by Molsoft LLC

    ICM-Browser is a free product of Molsoft, and provides access to structural biology data and protein families. It reads PDB or alignment files directly from online databases and provides a molecular...

    Latest version of ICM-Browser is 3.5-0 and it was released on February 21, 2007.

    Tags: Molecular Modelling Software, Computational Chemistry Software
  • MADNESS by Oak Ridge National Laboratory,Stony Brook University,Virginia Tech,Argonne National Laboratory

    MADNESS (Multiresolution Adaptive Numerical Environment for Scientific Simulation) is a high-level software environment for the solution of integral and differential equations in many dimensions...

    Tags: Numerical Software, Parallel Computing, Mathematical Software, Free Mathematics Software, Computational Chemistry Software
  • Advanced Simulation Library

    Advanced Simulation Library (ASL) is free and open-source hardware-accelerated multiphysics simulation platform. It enables users to write customized numerical solvers in C++ and deploy them on a...

    Latest version of Advanced Simulation Library is 0.1.7 and it was released on 2016-11-09.

    Tags: Computational Chemistry Software, Computeraided Engineering Software For Linux, Software Using The Gnu Agpl License, Computational Fluid Dynamics, Free Science Software, Open Source Computer Aided Engineering Applications, Articles Containing Video Clips, Gpgpu, Numerical Libraries, C Libraries
  • ADF Info by Scientific Computing & Modelling

    Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory (DFT). ADF was first developed in the early...

    Latest version of ADF Info is 2017.106 and it was released on June 2017.

    Tags: Computational Chemistry Software, Molecular Modelling Software, Molecular Dynamics Software, Density Functional Theory Software
  • BigDFT by Commissariat à l'énergie atomique,Basel University

    BigDFT is a free software package for physicists and chemists, distributed under the GNU General Public License, whose main program allows the total energy, charge density, and electronic structure...

    Tags: Computational Physics, Density Functional Theory Software, Free Physics Software, Computational Chemistry Software
  • CASTEP

    CASTEP (Cambridge Serial Total Energy Package) is a commercial software package which uses density functional theory with a plane wave basis set to calculate the electronic properties of crystalline...

    Latest version of CASTEP is 17.2 and it was released on 2017-02-28.

    Tags: Computational Chemistry Software, Physics Software, Density Functional Theory Software
  • HORTON

    HORTON, the Helpful Open-source Research TOol for N-fermion systems, is an open-source modular quantum chemistry program written primarily in Python. It is composed of several quantum mechanical...

    Latest version of HORTON is 2.0.0 and it was released on June 11, 2015.

    Tags: Computational Chemistry Software, Density Functional Theory Software
  • Jaguar by Schrödinger Inc.

    Jaguar is an ab initio quantum chemistry package for both gas and solution phase calculations, with strength in treating metal-containing systems. It is commercial software marketed by the company...

    Tags: Computational Chemistry Software, Proprietary Commercial Software For Linux
  • Materials Studio by Accelrys, now BIOVIA

    Materials Studio is software for simulating and modeling materials. It is developed and distributed by BIOVIA (formerly Accelrys), a firm specializing in research software for computational...

    Latest version of Materials Studio is 5.5.2 and it was released on {{Start date and age|2017}}.

    Tags: Simulation Software, Computational Chemistry Software
  • NWChem by Pacific Northwest National Laboratory

    NWChem is an ab initio computational chemistry software package which also includes quantum chemical and molecular dynamics functionality. It was designed to run on high-performance parallel...

    Latest version of NWChem is 6.6 and it was released on October 20, 2015.

    Tags: Computational Chemistry Software, Free Chemistry Software, Chemistry Software For Linux
  • PSI4 by The PSI4 Project

    PSI is an ab initio computational chemistry package originally written by the research group of Henry F. Schaefer, III (University of Georgia). Utilizing PSI, one can perform a calculation on a...

    Latest version of PSI4 is PSI4 1.1 and it was released on 2017-05-19.

    Tags: Computational Chemistry Software, Free Chemistry Software, Chemistry Software For Linux
  • Spartan by Wavefunction, Inc. & Q-Chem

    Spartan is a molecular modelling and computational chemistry application from Wavefunction. It contains code for molecular mechanics, semi-empirical methods, ab initio models, density functional...

    Latest version of Spartan is Spartan'16 and it was released on {{Start date and age|2016}}.

    Tags: Molecular Modelling Software, Computational Chemistry Software, Electronic Structure Methods, Monte Carlo Molecular Modelling Software
  • TURBOMOLE by Turbomole GmbH

    TURBOMOLE is an ab initio computational chemistry program that implements various quantum chemistry methods. It was initially developed by the group of Prof. Reinhart Ahlrichs at the University of...

    Tags: Computational Chemistry Software
  • Massively Parallel Monte Carlo by University of South Florida

    Massively Parallel Monte Carlo (MPMC) is an Monte Carlo method package primarily designed to simulate liquids, molecular interfaces, and functionalized nanoscale materials. It was developed...

    Tags: Monte Carlo Particle Physics Software, Science Software For Linux, Computational Physics, Monte Carlo Methods, Theoretical Chemistry, Stochastic Models, Molecular Modelling, Free Software Programmed In C
  • MesoBioNano Studio by MBN Research Center

    MBN Studio (MesoBioNano Studio) is a general-purpose computer program for molecular modeling and design, as well as for visualization and analysis of atomistic simulations data. It is written in the...

    Latest version of MesoBioNano Studio is 3.0 and it was released on 2017-03-31.

    Tags: Molecular Modelling Software, Molecular Modelling, Physics Software
  • LiSiCA by Insilab (National Institute of Chemistry Slovenia)

    LiSiCA (Ligand Similarity using Clique Algorithm) is a ligand-based virtual screening software that searches for 2D and 3D similarities between a reference compound and a database of target...

    Tags: Molecular Modelling, Chemistry Software
  • SWISSMODEL

    SWISS-MODEL is a structural bioinformatics web-server dedicated to homology modeling of protein 3D structures. Homology modeling is currently the most accurate method to generate reliable...

    Tags: Bioinformatics, Molecular Modelling Software
  • Molekel by Swiss National Supercomputing Centre

    Molekel is a free software multiplatform molecular visualization program. It was originally developed at the University of Geneva by Peter F. Flükiger in the 1990s for Silicon Graphics Computers. In...

    Latest version of Molekel is 5.4 and it was released on {{Start date and age|2009|08}}.

    Tags: Chemistry Software For Linux, Free Chemistry Software, Molecular Modelling Software, Science Software That Uses Qt
  • LigandScout by Inte:Ligand GmbH

    LigandScout is computer software that allows creating three-dimensional (3D) pharmacophore models from structural data of macromolecule-ligand complexes, or from training and test sets of organic...

    Latest version of LigandScout is 4.0 and it was released on {{Start date and age|2016}}.

    Tags: Medicinal Chemistry, Molecular Modelling Software
  • Biochemical and Organic Simulation System by Jorgensen Research Group, Yale University

    Biochemical and Organic Simulation System (BOSS) is a general-purpose molecular modeling program that performs molecular mechanics calculations, Metropolis Monte Carlo statistical mechanics...

    Latest version of Biochemical and Organic Simulation System is 4.9 and it was released on {{Start date and age|2013|01}}.

    Tags: Molecular Modelling Software, Monte Carlo Molecular Modelling Software
  • Yet Another Scientific Artificial Reality Application by YASARA Biosciences,WHAT IF Foundation,Spronk NMR Consultancy

    Yet Another Scientific Artificial Reality Application (YASARA) is a computer program for molecular visualising, modelling, and dynamics. It has many scientific uses, as expressed by the large number...

    Latest version of Yet Another Scientific Artificial Reality Application is 16.7.22 and it was released on 2016-07-22.

    Tags: Molecular Modelling Software, Molecular Dynamics Software
  • MacroModel by Schrödinger, LLC

    MacroModel is a computer program for molecular modelling of organic compounds and biopolymers. It features various chemistry force fields, plus energy minimizing algorithms, to predict geometry and...

    Latest version of MacroModel is 11.3 and it was released on {{Start date and age|2016|03}}.

    Tags: Molecular Modelling Software, Molecular Dynamics Software
  • MMTK

    The Molecular Modelling Toolkit (MMTK) is an open-source software package written in Python, which performs common tasks in molecular modelling. , MMTK consists of about 18,000 lines of Python...

    Latest version of MMTK is 2.7.4 and it was released on 2011-04-28.

    Tags: Molecular Modelling Software, Molecular Dynamics Software, Python Software
  • MesoBioNano Explorer by MBN Research Center

    MBN Explorer (MesoBioNano Explorer) is a software package for molecular dynamics simulations, structure optimization and kinetic Monte Carlo simulations. It is designed for computational analysis of...

    Latest version of MesoBioNano Explorer is 3.0 and it was released on 2017-03-31.

    Tags: Molecular Dynamics Software, Molecular Modelling Software, Physics Software
  • VMD by University of Illinois at Urbana-Champaign

    Visual molecular dynamics (VMD) is a molecular modelling and visualization computer program. VMD is developed as mainly a tool to view and analyze the results of molecular dynamics simulations. It...

    Latest version of VMD is 1.9.3 and it was released on {{Start date and age|2016|11}}.

    Tags: Molecular Modelling Software
  • PyMOL by Schrödinger, Inc.

    PyMOL is computer software, a molecular visualization system created by Warren Lyford DeLano. It is user-sponsored, open-source software, released under the Python License. It was commercialized...

    Latest version of PyMOL is 1.8.6.2 and it was released on 2017-06-26.

    Tags: Articles Containing Video Clips, Chemistry Software For Linux, Free Chemistry Software, Molecular Modelling Software, Software That Uses Tk
  • CoNTub

    CoNTub is a software project written in Java which runs on Windows, Mac OS X, Linux and Unix Operating systems through any Java-enabled web browser. It is the first implementation of an algorithm...

    Latest version of CoNTub is 2.0 and it was released on {{release date and age |2011|09}}.

    Tags: Molecular Modelling Software, Freeware, Science Software, Java Platform Software
  • Ascalaph Designer by Agile Molecule

    Ascalaph Designer is a computer program for general purpose molecular modelling for molecular design and simulations. It provides a graphical environment for the common programs of quantum and...

    Latest version of Ascalaph Designer is 1.8.94 and it was released on 2015-12-03.

    Tags: Molecular Modelling Software, Molecular Dynamics Software, Free Science Software
  • LIGPLOT by European Bioinformatics Institute

    In bioinformatics LIGPLOT is a computer program that generates schematic 2-D representations of protein-ligand complexes from standard Protein Data Bank file input. The LIGPLOT is used to generate...

    Tags: Molecular Modelling Software
  • Avizo

    Avizo (pronounce: ‘a-VEE-zo’) is a general-purpose commercial software application for scientific and industrial data visualization and analysis. Avizo is developed by FEI Visualization Sciences...

    Latest version of Avizo is 9.2 and it was released on {{Start date and age|2016|07}}.

    Tags: 3d Graphics Software, 3d Imaging, Computational Fluid Dynamics, Computer Vision Software, Data Visualization Software, Earth Sciences Graphics Software, Graphics Software, Image Processing Software, Image Segmentation, Mesh Generators, Molecular Dynamics Software, Molecular Modelling Software, Nondestructive Testing, Physics Software, Science Software, Simulation Software, Software That Uses Qt, Virtual Reality
  • MOOSE by Idaho National Laboratory and contributors

    MOOSE (Multiphysics Object Oriented Simulation Environment) is an object-oriented C++ finite element framework for the development of tightly coupled multiphysics solvers from Idaho National...

    Tags: C Software, Computational Fluid Dynamics, Computeraided Engineering Software For Linux, Finite Element Software, Free Software Programmed In C, Idaho National Laboratory, Industrial Software, Nuclear Reactors, Physics Software, Scientific Simulation Software
  • UrQMD HadronString Transport Model by Goethe University

    UrQMD (Ultra relativistic Quantum Molecular Dynamics) is a fully integrated Monte Carlo simulation package for Proton+Proton, Proton+nucleus and nucleus+nucleus interactions. UrQMD has many...

    Latest version of UrQMD Hadron-String Transport Model is UrQMD 3.4 and it was released on August 2014.

    Tags: Fortran Software, Physics Software, Monte Carlo Particle Physics Software, Science Software For Linux
  • Phyz by Firma Stache

    Phyz (Dax Phyz) is a public domain, 2.5D physics engine with built-in editor and DirectX graphics and sound. In contrast to most other real-time physics engines, it is vertex based and stochastic....

    Latest version of Phyz (Dax Phyz) is 3.34 and it was released on 2017-03-02.

    Tags: Articles Containing Video Clips, Computer Physics Engines, Physics Software, Publicdomain Software
  • NNPDF by The NNPDF Collaboration

    NNPDF is the acronym used to identify the parton distribution functions from the NNPDF Collaboration. NNPDF parton densities are extracted from global fits to data based on a combination of a Monte...

    Tags: Particle Physics, Physics Software
  • HRS Computing

    HRS Computing is an opensource scientific software which simulates the hyper Rayleigh scattering (HRS) in nonlinear optics. The software is designed for researchers, and it is used to verify the...

    Latest version of HRS Computing is 2.0.0 and it was released on December 2010.

    Tags: Physics Software
  • PSG2 Serpent by VTT

    Serpent is a continuous-energy Monte Carlo reactor physics code capable for highly detailed, three-dimensional burnup calculation. It is under current development at VTT Technical Research Centre of...

    Latest version of PSG2 Serpent is 1.1.19 and it was released on 2013-04-02.

    Tags: Nuclear Technology, Nuclear Safety And Security, Monte Carlo Software, Physics Software, Scientific Simulation Software, Monte Carlo Particle Physics Software
  • Surface Evolver

    Surface Evolver is an interactive program for the study of surfaces shaped by surface tension and other energies, and subject to various constraints. A surface is implemented as a simplicial...

    Latest version of Surface Evolver is 2.70 and it was released on August 25th 2013.

    Tags: Mathematical Software, Physics Software, Sciencesoftware
  • FORM by Jos Vermaseren, et al.

    FORM is a symbolic manipulation system. It reads text files containing definitions of mathematical expressions as well as statements that tell it how to manipulate these expressions. Its original...

    Tags: Computer Algebra Systems, Free Computer Algebra Systems, Free Software Programmed In C, Mathematical Software, Physics Software, Science Software
  • RELAP53D by Idaho National Laboratory

    RELAP5-3D is a simulation tool that allows users to model the coupled behavior of the reactor coolant system and the core for various operational transients and postulated accidents that might occur...

    Tags: Fortran Software, Physics Software, Industrial Software, Computational Fluid Dynamics, Nuclear Reactors, Idaho National Laboratory
  • Nogrid pointsBlow by Nogrid GmbH

    Nogrid pointsBlow is a simulation software especially developed and designed for container glass industry. It is a Computational Fluid Dynamics (CFD) software product and computes the glass...

    Latest version of Nogrid pointsBlow is 2.1.7 and it was released on 2016-11-01.

    Tags: Physics Software, Computational Fluid Dynamics, Computeraided Engineering, Scientific Simulation Software
  • LISE by LISE<sup>++</sup> group @ NSCL / MSU

    The program LISE++ "LISE++: Radioactive beam production with in-flight separators", O. B. Tarasov and D. Bazin, Nuclear Instruments and Methods in Physics Research B (2008) 4657-4664. is designed to...

    Latest version of LISE++ is 10.0.6 and it was released on 2016-12-19.

    Tags: Physics Software, Scientific Simulation Software
  • KIVA by Los Alamos National Laboratory

    KIVA is a family of Fortran-based Computational Fluid Dynamics software developed by Los Alamos National Laboratory (LANL). The software predicts complex fuel and air flows as well as ignition,...

    Latest version of KIVA is KIVA-4mpi and it was released on {{Start date and age|2009}}.

    Tags: Fortran Software, Physics Software, Industrial Software, Computational Fluid Dynamics, Finite Element Software For Linux
  • FLUKA Particle Transport Code by INFN,CERN

    FLUKA (FLUktuierende KAskade) is a fully integrated Monte Carlo simulation package for the interaction and transport of particles and nuclei in matter. FLUKA has many applications in particle...

    Latest version of FLUKA Particle Transport Code is FLUKA 2011.2c.0 and it was released on 15 Oct 2014.

    Tags: Fortran Software, Physics Software, Monte Carlo Molecular Modelling Software, Science Software For Linux, Linuxonly Software
  • FASTRAD by Fastrad collaboration

    FASTRAD is a tool dedicated to the calculation of radiation effects (Dose and Displacement Damage) on electronics. The interface includes a 3D modeler with all the capabilities required for the...

    Latest version of FASTRAD is 3.4 and it was released on June 2014.

    Tags: Physics Software, Nuclear Physics, Radiation Effects
  • EPICS by Free software community

    The Experimental Physics and Industrial Control System (EPICS) is a software environment used to develop and implement distributed control systems to operate devices such as particle accelerators,...

    Latest version of EPICS is 3.14.12.5 and it was released on March 24, 2015.

    Tags: Science Software, Physics Software, Experimental Particle Physics, Industrial Automation Software
  • PSF Lab by Michael J. Nasse, Jörg C. Woehl

    PSF Lab is a software program that allows the calculation of the illumination point spread function (PSF) of a confocal microscope under various imaging conditions. The calculation of the electric...

    Latest version of PSF Lab is 3.0 and it was released on 2010-09-24.

    Tags: Optical Software, Physics Software
  • MCNP by LANL

    Monte Carlo N-Particle Transport Code (MCNP) is a software package for simulating nuclear processes. It is developed by Los Alamos National Laboratory since at least 1957 with several further major...

    Latest version of MCNP is MCNP 6.1 and it was released on 2013-08-05.

    Tags: Nuclear Technology, Nuclear Safety And Security, Monte Carlo Software, Physics Software, Fortran Software, Scientific Simulation Software, Monte Carlo Particle Physics Software
  • Physics Analysis Workstation

    The Physics Analysis Workstation (PAW) is an interactive, scriptable computer software tool for data analysis and graphical presentation in High Energy Physics (HEP). The development of this...

    Latest version of Physics Analysis Workstation is 2.13/08 and it was released on 2002-09-16.

    Tags: Free Science Software, Free Software Programmed In Fortran, Physics Software
  • Geant4 by Geant4 Collaboration

    Geant4 (for GEometry ANd Tracking) is a platform for "the simulation of the passage of particles through matter," using Monte Carlo methods. It is the successor of the GEANT series of software...

    Latest version of Geant4 is 10.3 and it was released on 2016-12-09.

    Tags: Experimental Particle Physics, Free Science Software, Free Software Programmed In C, Monte Carlo Particle Physics Software, Physics Software
  • APFEL A PDF Evolution Library

    APFEL is an opensource software able to perform Dokshitzer-Gribov-Lipatov-Altarelli-Parisi (DGLAP) evolution up to next to next to leading order (NNLO) in quantum chromodynamics (QCD) and to leading...

    Latest version of APFEL: A PDF Evolution Library is 2.0.1 and it was released on January 2014.

    Tags: Physics Software
  • imc FAMOS by imc Meßsysteme GmbH (integrated measurement & control), Berlin

    FAMOS is a graphical data analysis program for evaluating and visually displaying measurement results. The program, whose name is an acronym for Fast Analysis And Monitoring Of Signals, was...

    Tags: Science Software, Physics Software, Science Software For Windows, Data Analysis Software
  • DelPhi by DelPhi Development Team

    DelPhi is a scientific application which calculates electrostatic potentials in and around macromolecules and the corresponding electrostatic energies. It incorporates the effects of ionic strength...

    Tags: Physics Software, Chemistry Software
  • HippoDraw by Paul F. Kunz

    HippoDraw is a powerful object oriented statistical data analysis package written in C++, with user interaction via a Qt-based GUI and a Python scriptable interface. It is being developed by Paul...

    Latest version of HippoDraw is 1.21.3 and it was released on {{Start date and age|2007|10}}.

    Tags: Data Analysis Software, Free Plotting Software, Free Science Software, Free Software Programmed In C, Free Software Projects, Free Statistical Software, Numerical Software, Physics Software, Science Software For Linux, Science Software For Macos, Science Software For Windows, Science Software That Uses Qt
  • OpenScientist by Guy Barrand

    OpenScientist is an integration of open source products working together to do scientific visualization and data analysis, in particular for high energy physics (HEP). Among other things, it...

    Latest version of OpenScientist is 16.8 and it was released on December 2008.

    Tags: Data Analysis Software, Experimental Particle Physics, Free Plotting Software, Physics Software, Plotting Software
  • STARMAD

    STARMAD (space tool for advanced and rapid mission analysis and design) deals with the latest trend in the space industry is towards space missions, spacecraft, systems and products, which require...

    Latest version of STARMAD is 3.2.0 and it was released on January 1, 2011.

    Tags: Aerospace Engineering Software, Systems Engineering, Project Management, Astronomy Software, Mathematical Software, Physics Software, Space Science, Spaceflight, Mathematical Optimization, Business Software For Windows
  • OrbitVis

    Orbit-Vis is an orbit simulation program which is designed to allow users to simulate a satellite in any orbit around the Earth, and to give the user data on the position and motion of the satellite...

    Tags: Science Software For Windows, Astronomy Software, Free Software, Computational Astronomy, Free Science Software, Free Astronomy Software, Science Education Software, Computational Physics, Space Science, Physics Software
  • ASTOS by Astos Solutions GmbH

    ASTOS is a tool dedicated to mission analysis, Trajectory optimization, vehicle design and simulation for space scenarios, i.e. launch, re-entry missions, orbit transfers, Earth observation,...

    Latest version of ASTOS is 8.0.6 and it was released on 2015-12-07.

    Tags: Astronomy Software, Mathematical Software, Physics Software, Mathematical Optimization Software
  • Java Analysis Studio by FreeHEP

    Java Analysis Studio (JAS) is an object oriented data analysis package developed for the analysis of particle physics data. The latest major version is JAS3. JAS3 is particularly notable for being...

    Latest version of Java Analysis Studio is JAS3, 3.0.3 and it was released on 2013-06-10.

    Tags: Data Analysis Software, Experimental Particle Physics, Free Software Programmed In Java, Free Statistical Software, Numerical Software, Physics Software
  • STK by Analytical Graphics, Inc.

    Systems Tool Kit (formerly Satellite Tool Kit), often referred to by its initials STK, is a physics-based software package from Analytical Graphics, Inc. that allows engineers and scientists to...

    Latest version of STK is 11.1 and it was released on {{Start date and age|2016|06}}.

    Tags: 1989 Software, 3d Graphics Software, Astronomy Software, Mathematical Software, Physics Software
  • tomvizcom

    tomviz is an open source software platform for reproducible volumetric visualization and data processing. The platform is designed for a wide range scientific applications but is especially tailored...

    Tags: 3d Graphics Software, 3d Imaging, Data Visualization Software, Image Processing Software, Graphics Software, Physics Software, Science Software
  • FreeFlyer by a.i. solutions, Inc.

    FreeFlyer is a software application for use in satellite mission analysis, design and operations. FreeFlyer's architecture centers on its native scripting language, known as FreeForm script. As a...

    Latest version of FreeFlyer is 7.3 and it was released on {{start date and age|2017|9}}.

    Tags: 3d Graphics Software, Aerospace Engineering Software, Astronomy Software, Mathematical Software, Physics Software, Science Software For Windows
  • ROOT by CERN

    ROOT is an object-oriented program and library developed by CERN. It was originally designed for particle physics data analysis and contains several features specific to this field, but it is also...

    Latest version of ROOT is 6.10/04 and it was released on 2017-07-28.

    Tags: C Libraries, Data Analysis Software, Data Management Software, Experimental Particle Physics, Free Physics Software, Free Plotting Software, Free Science Software, Free Software Programmed In C, Numerical Software, Physics Software, Plotting Software
  • Wolfram Mathematica by Wolfram Research

    Wolfram Mathematica (usually termed Mathematica, Mathematica software suite) is a mathematical symbolic computation program, sometimes termed a computer algebra system or program, used in many...

    Tags: 1988 Software, Astronomical Databases, Computational Notebook, Computer Algebra System Software For Linux, Computer Algebra System Software For Macos, Computer Algebra System Software For Windows, Computer Algebra Systems, Crossplatform Software, Data Mining And Machine Learning Software, Earth Sciences Graphics Software, Econometrics Software, Formula Editors, Interactive Geometry Software, Mathematical Optimization Software, Mathematical Software, Numerical Analysis Software For Linux, Numerical Analysis Software For Macos, Numerical Analysis Software For Windows, Numerical Programming Languages, Numerical Software, Physics Software, Pirelated Software, Plotting Software, Proprietary Commercial Software For Linux, Proprietary Crossplatform Software, Regression And Curve Fitting Software, Simulation Programming Languages, Software That Uses Qt, Statistical Programming Languages, Theorem Proving Software Systems, Time Series Software, Wolfram Research
  • Speakeasy by Speakeasy Computing Corporation

    Speakeasy is a numerical computing interactive environment also featuring an interpreted programming language. It was initially developed for internal use at the Physics Division of Argonne National...

    Latest version of Speakeasy is IV Iota and it was released on 2006.

    Tags: Data Analysis Software, Mathematical Software, Physics Software, Proprietary Crossplatform Software, Numerical Analysis Software For Linux, Numerical Analysis Software For Macos, Numerical Analysis Software For Windows, Computer Algebra System Software For Windows, Computer Algebra System Software For Macos, Computer Algebra System Software For Linux, Array Programming Languages, Numerical Programming Languages, Numerical Linear Algebra, Statistical Programming Languages, Simulation Programming Languages, Programming Languages Created In 1964